Wall clock time and date at job start Wed Apr 1 2020 03:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46928 * 2 1 4 4 N 1.46503 * 109.47129 * 300.00215 * 3 2 1 5 5 C 1.34951 * 126.03586 * 124.97705 * 4 3 2 6 6 C 1.35311 * 107.74113 * 179.97438 * 5 4 3 7 7 C 1.39864 * 107.92482 * 359.97438 * 6 5 4 8 8 N 1.30835 * 108.20149 * 359.97438 * 7 6 5 9 9 N 1.46896 * 109.47552 * 119.99729 * 2 1 3 10 10 C 1.46907 * 110.99767 * 60.00230 * 9 2 1 11 11 C 1.50695 * 109.47047 * 180.02562 * 10 9 2 12 12 C 1.38306 * 119.92617 * 269.72278 * 11 10 9 13 13 C 1.38105 * 120.06812 * 179.72913 * 12 11 10 14 14 C 1.38882 * 119.92782 * 0.56732 * 13 12 11 15 15 O 1.35745 * 120.06935 * 179.68597 * 14 13 12 16 16 C 1.34830 * 117.00427 * 174.48949 * 15 14 13 17 17 H 1.08001 * 119.99850 * 5.05713 * 16 15 14 18 18 C 1.38650 * 120.00411 * 185.05464 * 16 15 14 19 19 N 1.31551 * 119.99941 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00209 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46813 * 90.00053 * 20 18 16 22 22 H 1.48496 * 109.47357 * 210.00097 * 20 18 16 23 23 H 1.48496 * 109.46942 * 330.00376 * 20 18 16 24 24 C 1.38885 * 119.86340 * 359.70828 * 14 13 12 25 25 C 1.38097 * 119.92648 * 359.97438 * 24 14 13 26 26 C 1.50695 * 109.47319 * 240.00380 * 2 1 3 27 27 O 1.20829 * 119.99795 * 24.99262 * 26 2 1 28 28 O 1.34225 * 120.00234 * 204.99969 * 26 2 1 29 29 H 1.08997 * 109.47102 * 59.99495 * 1 2 3 30 30 H 1.09003 * 109.46625 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46778 * 300.00073 * 1 2 3 32 32 H 1.09004 * 109.47206 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47007 * 60.00044 * 3 2 1 34 34 H 1.07999 * 126.12950 * 359.97438 * 5 4 3 35 35 H 1.08004 * 126.03778 * 180.02562 * 6 5 4 36 36 H 1.08002 * 125.90111 * 180.26621 * 7 6 5 37 37 H 1.00903 * 111.00512 * 183.95242 * 9 2 1 38 38 H 1.08999 * 109.46706 * 300.00024 * 10 9 2 39 39 H 1.08997 * 109.47027 * 59.99994 * 10 9 2 40 40 H 1.08002 * 119.96497 * 359.97438 * 12 11 10 41 41 H 1.07997 * 120.03635 * 180.27962 * 13 12 11 42 42 H 0.97001 * 120.00385 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.03172 * 179.97438 * 24 14 13 44 44 H 1.08003 * 119.96551 * 180.02562 * 25 24 14 45 45 H 0.96697 * 117.00638 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1332 -1.1962 5 6 0.8517 3.2869 -1.2167 6 6 0.5933 3.5894 -2.5100 7 6 1.1549 2.5867 -3.3071 8 7 1.7304 1.7138 -2.5207 9 7 2.0198 -0.6924 1.1994 10 6 1.5488 -2.0835 1.2334 11 6 2.0695 -2.7599 2.4753 12 6 3.2841 -3.4206 2.4434 13 6 3.7667 -4.0367 3.5813 14 6 3.0254 -4.0024 4.7552 15 8 3.4940 -4.6125 5.8737 16 6 2.7821 -4.4449 7.0064 17 1 1.8410 -3.9159 6.9794 18 6 3.2583 -4.9517 8.2059 19 7 4.4049 -5.5957 8.2389 20 14 2.2724 -4.7188 9.7754 21 1 1.3403 -5.8619 9.9485 22 1 3.1968 -4.6538 10.9357 23 1 1.4962 -3.4558 9.6894 24 6 1.8033 -3.3431 4.7824 25 6 1.3294 -2.7233 3.6429 26 6 2.0324 -0.7103 -1.2305 27 8 1.3396 -0.7702 -2.2186 28 8 3.2494 -1.2765 -1.2287 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 0.8900 34 1 0.5517 3.8650 -0.3552 35 1 0.0501 4.4531 -2.8642 36 1 1.1234 2.5433 -4.3858 37 1 3.0263 -0.6500 1.2558 38 1 0.4589 -2.0979 1.2419 39 1 1.9123 -2.6117 0.3519 40 1 3.8577 -3.4513 1.5288 41 1 4.7173 -4.5486 3.5571 42 1 4.7379 -5.9506 9.0780 43 1 1.2244 -3.3151 5.6937 44 1 0.3793 -2.2100 3.6635 45 1 3.5279 -1.7211 -2.0410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592923163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:58 Heat of formation + Delta-G solvation = 3.824678 kcal Electronic energy + Delta-G solvation = -29604.283577 eV Core-core repulsion = 25397.081032 eV Total energy + Delta-G solvation = -4207.202546 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61275 -40.51391 -39.09504 -37.54904 -36.48600 -36.08757 -33.63160 -32.33060 -31.00960 -30.21459 -30.15213 -28.66134 -27.27454 -25.61181 -24.73262 -23.92610 -21.99831 -21.39092 -21.29154 -20.42276 -19.94897 -18.24651 -18.01911 -17.53980 -17.14797 -16.86789 -16.47959 -15.51832 -15.31572 -14.66513 -14.60642 -14.45205 -14.28013 -14.20319 -13.91080 -13.66241 -13.50322 -13.29666 -13.10440 -12.99141 -12.73219 -12.71551 -12.35334 -12.25723 -12.06570 -11.72124 -11.62211 -11.59199 -11.26275 -10.84543 -10.81806 -10.77766 -10.65482 -10.57322 -10.45722 -9.64179 -9.36629 -8.88529 -8.85690 -8.75118 -8.20920 -7.23818 -6.48382 -4.07193 1.65960 2.01870 2.19131 2.20538 2.28762 2.66294 2.80219 3.10486 3.11628 3.16464 3.78674 3.93956 4.13897 4.27613 4.54580 4.61038 4.61701 4.86226 4.96533 5.05883 5.13961 5.20289 5.26422 5.32659 5.34266 5.42604 5.46175 5.52650 5.68730 5.73050 5.77462 5.81603 5.91002 6.17900 6.38388 6.39058 6.44583 6.57919 6.67417 6.71601 6.87117 7.03112 7.05490 7.23514 7.36159 7.41257 7.48050 7.78676 7.81446 7.96631 8.97234 9.66832 10.69454 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.002032 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.332404 B =13777.079806 C =14386.968317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.120 3.880 3 C 0.146 3.854 4 N -0.376 5.376 5 C 0.055 3.945 6 C -0.274 4.274 7 C 0.043 3.957 8 N -0.277 5.277 9 N -0.658 5.658 10 C 0.115 3.885 11 C -0.188 4.188 12 C -0.064 4.064 13 C -0.194 4.194 14 C 0.157 3.843 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.236 4.236 25 C -0.047 4.047 26 C 0.454 3.546 27 O -0.487 6.487 28 O -0.520 6.520 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.174 0.826 35 H 0.146 0.854 36 H 0.179 0.821 37 H 0.356 0.644 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.109 0.891 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 16.123 -17.857 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.026 3.974 3 C 0.024 3.976 4 N -0.159 5.159 5 C -0.090 4.090 6 C -0.304 4.304 7 C -0.144 4.144 8 N -0.098 5.098 9 N -0.291 5.291 10 C -0.012 4.012 11 C -0.189 4.189 12 C -0.083 4.083 13 C -0.213 4.213 14 C 0.103 3.897 15 O -0.080 6.080 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.256 4.256 25 C -0.066 4.066 26 C 0.292 3.708 27 O -0.370 6.370 28 O -0.333 6.333 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.191 0.809 35 H 0.164 0.836 36 H 0.196 0.804 37 H 0.177 0.823 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.127 0.873 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -6.251 15.109 -16.956 23.556 hybrid contribution -0.218 0.199 -0.473 0.557 sum -6.469 15.308 -17.429 24.082 Atomic orbital electron populations 1.21810 0.90091 1.03835 1.03267 1.21260 0.97922 0.93122 0.85116 1.21682 1.00618 0.90507 0.84808 1.48640 1.43150 1.18540 1.05588 1.22567 0.97076 0.89611 0.99785 1.21497 1.12432 1.04419 0.92013 1.23858 0.97717 0.92686 1.00132 1.77513 1.23662 1.22177 0.86419 1.60737 1.17909 1.16732 1.33753 1.20759 0.99782 0.85350 0.95318 1.18958 0.97981 1.07098 0.94885 1.20505 0.94727 0.96413 0.96623 1.20177 1.01447 1.07966 0.91752 1.19417 0.91751 0.90218 0.88286 1.83975 1.48611 1.60892 1.14496 1.21333 1.04132 1.38040 0.83284 0.89004 1.25301 0.96482 0.96175 0.98587 1.70035 1.18359 1.33748 1.27493 0.85707 0.78807 0.79056 0.79840 1.19876 1.20244 1.19158 1.21158 0.98482 1.06353 0.99560 1.20558 0.98000 0.96241 0.91754 1.24380 0.79116 0.76711 0.90595 1.90684 1.56834 1.54719 1.34803 1.84503 1.35352 1.67665 1.45744 0.91082 0.91335 0.90105 0.88800 0.85894 0.80905 0.83635 0.80386 0.82336 0.90543 0.94785 0.87295 0.86579 0.91983 0.85561 0.87466 0.73399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 7.61 37.16 0.28 -1.05 16 2 C 0.12 1.21 0.76 -132.75 -0.10 1.11 16 3 C 0.15 1.22 5.72 -4.04 -0.02 1.19 16 4 N -0.38 -3.65 2.91 -61.36 -0.18 -3.83 16 5 C 0.06 0.43 11.45 -17.22 -0.20 0.23 16 6 C -0.27 -2.25 10.80 -40.02 -0.43 -2.68 16 7 C 0.04 0.43 12.03 -17.37 -0.21 0.22 16 8 N -0.28 -3.35 9.37 30.62 0.29 -3.06 16 9 N -0.66 -7.13 5.96 -102.39 -0.61 -7.74 16 10 C 0.12 1.46 5.08 -4.97 -0.03 1.44 16 11 C -0.19 -2.99 5.40 -104.58 -0.56 -3.55 16 12 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 13 C -0.19 -3.97 9.99 -39.39 -0.39 -4.36 16 14 C 0.16 3.70 6.65 -39.10 -0.26 3.44 16 15 O -0.18 -4.96 9.76 0.07 0.00 -4.96 16 16 C -0.39 -10.75 9.49 30.88 0.29 -10.46 16 17 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 20 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 C -0.24 -4.95 9.17 -39.39 -0.36 -5.31 16 25 C -0.05 -0.81 9.69 -39.61 -0.38 -1.20 16 26 C 0.45 5.40 4.73 36.00 0.17 5.57 16 27 O -0.49 -7.12 14.99 -18.75 -0.28 -7.41 16 28 O -0.52 -5.29 12.23 -39.24 -0.48 -5.76 16 29 H 0.07 0.81 7.33 -51.93 -0.38 0.43 16 30 H 0.07 0.74 6.40 -51.93 -0.33 0.40 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.12 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.36 3.88 8.37 -39.29 -0.33 3.55 16 38 H 0.08 0.94 6.24 -51.93 -0.32 0.62 16 39 H 0.03 0.44 6.58 -51.93 -0.34 0.10 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 44 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 45 H 0.41 2.81 9.10 45.56 0.41 3.23 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -34.16 379.39 -7.29 -41.46 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -4.80 Total: 10.52 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.68 Total: -15.92 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.26 Total: -38.82 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.76 Total: -18.13 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.16 -7.29 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592923163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.283 kcal (2) G-P(sol) polarization free energy of solvation -34.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds