Wall clock time and date at job start Wed Apr 1 2020 03:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46928 * 2 1 4 4 N 1.46503 * 109.47129 * 300.00215 * 3 2 1 5 5 C 1.34951 * 126.03586 * 124.97705 * 4 3 2 6 6 C 1.35311 * 107.74113 * 179.97438 * 5 4 3 7 7 C 1.39864 * 107.92482 * 359.97438 * 6 5 4 8 8 N 1.30835 * 108.20149 * 359.97438 * 7 6 5 9 9 N 1.46896 * 109.47552 * 119.99729 * 2 1 3 10 10 C 1.46907 * 110.99767 * 60.00230 * 9 2 1 11 11 C 1.50695 * 109.47047 * 180.02562 * 10 9 2 12 12 C 1.38306 * 119.92617 * 269.72278 * 11 10 9 13 13 C 1.38105 * 120.06812 * 179.72913 * 12 11 10 14 14 C 1.38882 * 119.92782 * 0.56732 * 13 12 11 15 15 O 1.35745 * 120.06935 * 179.68597 * 14 13 12 16 16 C 1.34830 * 117.00427 * 174.48949 * 15 14 13 17 17 H 1.08001 * 119.99850 * 5.05713 * 16 15 14 18 18 C 1.38650 * 120.00411 * 185.05464 * 16 15 14 19 19 N 1.31551 * 119.99941 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00209 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46813 * 90.00053 * 20 18 16 22 22 H 1.48496 * 109.47357 * 210.00097 * 20 18 16 23 23 H 1.48496 * 109.46942 * 330.00376 * 20 18 16 24 24 C 1.38885 * 119.86340 * 359.70828 * 14 13 12 25 25 C 1.38097 * 119.92648 * 359.97438 * 24 14 13 26 26 C 1.50695 * 109.47319 * 240.00380 * 2 1 3 27 27 O 1.20829 * 119.99795 * 24.99262 * 26 2 1 28 28 O 1.34225 * 120.00234 * 204.99969 * 26 2 1 29 29 H 1.08997 * 109.47102 * 59.99495 * 1 2 3 30 30 H 1.09003 * 109.46625 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46778 * 300.00073 * 1 2 3 32 32 H 1.09004 * 109.47206 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47007 * 60.00044 * 3 2 1 34 34 H 1.07999 * 126.12950 * 359.97438 * 5 4 3 35 35 H 1.08004 * 126.03778 * 180.02562 * 6 5 4 36 36 H 1.08002 * 125.90111 * 180.26621 * 7 6 5 37 37 H 1.00903 * 111.00512 * 183.95242 * 9 2 1 38 38 H 1.08999 * 109.46706 * 300.00024 * 10 9 2 39 39 H 1.08997 * 109.47027 * 59.99994 * 10 9 2 40 40 H 1.08002 * 119.96497 * 359.97438 * 12 11 10 41 41 H 1.07997 * 120.03635 * 180.27962 * 13 12 11 42 42 H 0.97001 * 120.00385 * 180.02562 * 19 18 16 43 43 H 1.07995 * 120.03172 * 179.97438 * 24 14 13 44 44 H 1.08003 * 119.96551 * 180.02562 * 25 24 14 45 45 H 0.96697 * 117.00638 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5516 2.1332 -1.1962 5 6 0.8517 3.2869 -1.2167 6 6 0.5933 3.5894 -2.5100 7 6 1.1549 2.5867 -3.3071 8 7 1.7304 1.7138 -2.5207 9 7 2.0198 -0.6924 1.1994 10 6 1.5488 -2.0835 1.2334 11 6 2.0695 -2.7599 2.4753 12 6 3.2841 -3.4206 2.4434 13 6 3.7667 -4.0367 3.5813 14 6 3.0254 -4.0024 4.7552 15 8 3.4940 -4.6125 5.8737 16 6 2.7821 -4.4449 7.0064 17 1 1.8410 -3.9159 6.9794 18 6 3.2583 -4.9517 8.2059 19 7 4.4049 -5.5957 8.2389 20 14 2.2724 -4.7188 9.7754 21 1 1.3403 -5.8619 9.9485 22 1 3.1968 -4.6538 10.9357 23 1 1.4962 -3.4558 9.6894 24 6 1.8033 -3.3431 4.7824 25 6 1.3294 -2.7233 3.6429 26 6 2.0324 -0.7103 -1.2305 27 8 1.3396 -0.7702 -2.2186 28 8 3.2494 -1.2765 -1.2287 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 0.8900 34 1 0.5517 3.8650 -0.3552 35 1 0.0501 4.4531 -2.8642 36 1 1.1234 2.5433 -4.3858 37 1 3.0263 -0.6500 1.2558 38 1 0.4589 -2.0979 1.2419 39 1 1.9123 -2.6117 0.3519 40 1 3.8577 -3.4513 1.5288 41 1 4.7173 -4.5486 3.5571 42 1 4.7379 -5.9506 9.0780 43 1 1.2244 -3.3151 5.6937 44 1 0.3793 -2.2100 3.6635 45 1 3.5279 -1.7211 -2.0410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592923163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:57 Heat of formation + Delta-G solvation = -20.174277 kcal Electronic energy + Delta-G solvation = -29605.324250 eV Core-core repulsion = 25397.081032 eV Total energy + Delta-G solvation = -4208.243218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31447 -41.34232 -40.73037 -38.80389 -37.70408 -37.05965 -34.64254 -34.11571 -32.05782 -31.75281 -30.85634 -29.78433 -28.12888 -27.37512 -25.71491 -25.05693 -23.58820 -22.31933 -21.91889 -21.69518 -20.72963 -19.81982 -19.07316 -18.82227 -18.33643 -17.82745 -17.31478 -16.52270 -16.36437 -16.21231 -16.00519 -15.76958 -15.49554 -15.08947 -15.00752 -14.91932 -14.60281 -14.45244 -14.29562 -14.19576 -13.66067 -13.58644 -13.44880 -13.26485 -13.15660 -13.01010 -12.90727 -12.57235 -12.48880 -12.36844 -12.27578 -12.11627 -11.99401 -11.65575 -11.43191 -11.14089 -10.78164 -10.32795 -9.76633 -9.69629 -9.46896 -8.91066 -8.45416 -6.13337 0.63339 0.66636 1.03345 1.26971 1.36838 1.45533 1.54146 1.55408 2.02743 2.03857 2.19289 2.75192 3.01384 3.26244 3.41896 3.53127 3.54692 3.93735 4.01005 4.05795 4.14397 4.20617 4.24291 4.35181 4.42736 4.48361 4.52472 4.63420 4.66050 4.74502 4.81836 4.84069 4.95838 5.06544 5.12345 5.18066 5.20633 5.32813 5.54874 5.62594 5.70073 5.74482 5.78533 5.82751 6.05120 6.14172 6.22331 6.24701 6.82101 6.99557 7.00207 7.80724 8.77719 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.002032 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.332404 B =13777.079806 C =14386.968317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.126 3.874 3 C 0.144 3.856 4 N -0.382 5.382 5 C 0.059 3.941 6 C -0.284 4.284 7 C 0.028 3.972 8 N -0.323 5.323 9 N -0.649 5.649 10 C 0.120 3.880 11 C -0.157 4.157 12 C -0.056 4.056 13 C -0.206 4.206 14 C 0.116 3.884 15 O -0.233 6.233 16 C -0.411 4.411 17 H 0.103 0.897 18 C -0.025 4.025 19 N -0.921 5.921 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.251 1.251 24 C -0.243 4.243 25 C -0.043 4.043 26 C 0.453 3.547 27 O -0.519 6.519 28 O -0.520 6.520 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.210 0.790 35 H 0.166 0.834 36 H 0.190 0.810 37 H 0.359 0.641 38 H 0.089 0.911 39 H 0.038 0.962 40 H 0.143 0.857 41 H 0.110 0.890 42 H 0.272 0.728 43 H 0.119 0.881 44 H 0.141 0.859 45 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 18.773 -18.758 27.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.032 3.968 3 C 0.022 3.978 4 N -0.165 5.165 5 C -0.086 4.086 6 C -0.313 4.313 7 C -0.158 4.158 8 N -0.144 5.144 9 N -0.283 5.283 10 C -0.008 4.008 11 C -0.158 4.158 12 C -0.074 4.074 13 C -0.225 4.225 14 C 0.065 3.935 15 O -0.140 6.140 16 C -0.487 4.487 17 H 0.120 0.880 18 C -0.222 4.222 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.175 1.175 24 C -0.263 4.263 25 C -0.062 4.062 26 C 0.293 3.707 27 O -0.405 6.405 28 O -0.334 6.334 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.171 0.829 34 H 0.227 0.773 35 H 0.183 0.817 36 H 0.207 0.793 37 H 0.180 0.820 38 H 0.108 0.892 39 H 0.056 0.944 40 H 0.160 0.840 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.136 0.864 44 H 0.159 0.841 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -8.258 17.786 -17.923 26.566 hybrid contribution 0.361 -0.473 -0.613 0.855 sum -7.896 17.313 -18.536 26.565 Atomic orbital electron populations 1.21769 0.89909 1.03362 1.03472 1.21289 0.97945 0.93912 0.83667 1.21836 1.00912 0.89528 0.85510 1.48730 1.43532 1.19162 1.05115 1.23206 0.95615 0.88898 1.00906 1.21827 1.12574 1.04724 0.92165 1.24260 0.97594 0.92992 1.01002 1.77446 1.25438 1.23724 0.87812 1.60639 1.18137 1.15284 1.34201 1.20701 1.00526 0.86244 0.93323 1.19374 0.96525 1.04373 0.95561 1.20858 0.95233 0.94865 0.96447 1.20412 1.01421 1.08535 0.92127 1.19973 0.93488 0.91829 0.88162 1.83941 1.50365 1.63909 1.15756 1.21819 1.04687 1.38326 0.83886 0.87967 1.26592 0.97696 0.95699 1.02209 1.70184 1.20884 1.36378 1.28502 0.84589 0.77247 0.79710 0.74697 1.18931 1.19744 1.17479 1.21259 0.97651 1.06587 1.00766 1.20901 0.99252 0.95277 0.90736 1.24775 0.79050 0.76159 0.90749 1.90679 1.57782 1.55905 1.36111 1.84472 1.34708 1.67497 1.46701 0.92558 0.92148 0.88128 0.88608 0.82917 0.77312 0.81651 0.79295 0.82046 0.89246 0.94405 0.83975 0.87139 0.91912 0.86366 0.84096 0.71914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 7.61 71.98 0.55 -1.61 16 2 C 0.13 2.12 0.76 2.78 0.00 2.13 16 3 C 0.14 1.91 5.72 86.38 0.49 2.40 16 4 N -0.38 -6.44 2.91 -348.04 -1.01 -7.45 16 5 C 0.06 0.73 11.45 83.54 0.96 1.69 16 6 C -0.28 -4.02 10.80 21.99 0.24 -3.78 16 7 C 0.03 0.52 12.03 85.23 1.02 1.55 16 8 N -0.32 -7.41 9.37 -57.03 -0.53 -7.95 16 9 N -0.65 -11.44 5.96 -477.87 -2.85 -14.28 16 10 C 0.12 2.55 5.08 85.55 0.43 2.98 16 11 C -0.16 -4.46 5.40 -19.84 -0.11 -4.57 16 12 C -0.06 -1.74 9.69 22.25 0.22 -1.53 16 13 C -0.21 -8.46 9.99 22.39 0.22 -8.24 16 14 C 0.12 5.62 6.65 22.58 0.15 5.77 16 15 O -0.23 -13.86 9.76 -22.68 -0.22 -14.08 16 16 C -0.41 -23.60 9.49 67.92 0.64 -22.95 16 17 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 18 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 19 N -0.92 -56.22 13.67 21.61 0.30 -55.93 16 20 Si 1.02 42.28 29.55 68.60 2.03 44.31 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 24 C -0.24 -10.14 9.17 22.39 0.21 -9.94 16 25 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 26 C 0.45 9.78 4.73 71.23 0.34 10.12 16 27 O -0.52 -14.57 14.99 21.95 0.33 -14.24 16 28 O -0.52 -9.33 12.23 -51.37 -0.63 -9.95 16 29 H 0.06 1.15 7.33 -2.39 -0.02 1.14 16 30 H 0.06 1.11 6.40 -2.39 -0.02 1.10 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.15 1.08 8.07 -2.39 -0.02 1.06 16 34 H 0.21 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 36 H 0.19 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.36 6.37 8.37 -89.69 -0.75 5.62 16 38 H 0.09 1.78 6.24 -2.39 -0.01 1.77 16 39 H 0.04 0.82 6.58 -2.39 -0.02 0.81 16 40 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 41 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 42 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.12 5.04 5.64 -2.91 -0.02 5.02 16 44 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.42 5.02 9.10 -74.06 -0.67 4.35 16 Total: -1.00 -79.85 379.39 3.09 -76.77 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.37 Total: 30.87 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 6.05 Total: -28.07 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -4.10 Total: -85.61 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.52 Total: -38.27 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -79.85 3.09 -76.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592923163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.593 kcal (2) G-P(sol) polarization free energy of solvation -79.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds