Wall clock time and date at job start Wed Apr 1 2020 03:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 6 6 H 1.07995 * 120.00006 * 240.00415 * 5 3 2 7 7 C 1.37875 * 120.00190 * 59.99565 * 5 3 2 8 8 N 1.31520 * 119.99966 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00189 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47255 * 90.00191 * 9 7 5 11 11 H 1.48503 * 109.46900 * 210.00227 * 9 7 5 12 12 H 1.48494 * 109.46968 * 329.99883 * 9 7 5 13 13 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 14 14 C 1.34777 * 119.99828 * 274.72131 * 13 3 2 15 15 O 1.21723 * 120.00033 * 0.28033 * 14 13 3 16 16 C 1.46293 * 120.00176 * 180.27650 * 14 13 3 17 17 N 1.29433 * 125.27687 * 359.69910 * 16 14 13 18 18 N 1.39342 * 113.99037 * 179.87325 * 17 16 14 19 19 C 1.39601 * 125.53906 * 180.14564 * 18 17 16 20 20 C 1.38970 * 120.07458 * 180.02562 * 19 18 17 21 21 C 1.38093 * 119.91356 * 179.78695 * 20 19 18 22 22 C 1.38297 * 120.08232 * 0.46794 * 21 20 19 23 23 C 1.38298 * 120.15852 * 359.78518 * 22 21 20 24 24 C 1.38091 * 120.08328 * 359.97438 * 23 22 21 25 25 C 1.47128 * 108.91853 * 0.39307 * 18 17 16 26 26 H 1.09001 * 110.58713 * 241.24523 * 25 18 17 27 27 C 1.50696 * 110.71888 * 118.39650 * 25 18 17 28 28 O 1.20830 * 119.99670 * 345.67690 * 27 25 18 29 29 O 1.34231 * 120.00244 * 165.67605 * 27 25 18 30 30 C 1.51192 * 125.28127 * 179.97438 * 16 14 13 31 31 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 33 33 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 34 34 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 35 35 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 36 36 H 0.96995 * 120.00431 * 179.97438 * 8 7 5 37 37 H 0.97001 * 120.00384 * 95.00578 * 13 3 2 38 38 H 1.07995 * 120.04225 * 0.02562 * 20 19 18 39 39 H 1.07999 * 119.95474 * 180.20593 * 21 20 19 40 40 H 1.08000 * 119.92383 * 179.76903 * 22 21 20 41 41 H 1.08006 * 119.95944 * 180.02562 * 23 22 21 42 42 H 1.07992 * 120.04099 * 179.97438 * 24 23 22 43 43 H 0.96707 * 116.99579 * 180.02562 * 29 27 25 44 44 H 1.08997 * 110.53164 * 298.58989 * 30 16 14 45 45 H 1.09004 * 110.52804 * 61.20584 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1733 9 14 6.0051 0.8799 -1.3811 10 1 6.5540 -0.3521 -0.7597 11 1 6.3836 0.9212 -2.8165 12 1 6.5577 2.0718 -0.6889 13 7 1.6525 2.0974 1.2518 14 6 0.4374 2.6692 1.3650 15 8 -0.3400 2.6370 0.4289 16 6 0.0526 3.3286 2.6129 17 7 0.7935 3.4180 3.6704 18 7 0.1932 4.1002 4.7268 19 6 0.7742 4.3383 5.9736 20 6 0.0696 5.0336 6.9489 21 6 0.6459 5.2635 8.1826 22 6 1.9262 4.8112 8.4448 23 6 2.6324 4.1234 7.4747 24 6 2.0607 3.8855 6.2404 25 6 -1.1549 4.5235 4.3166 26 1 -1.2401 5.6098 4.3430 27 6 -2.2029 3.8898 5.1946 28 8 -1.9105 2.9612 5.9103 29 8 -3.4613 4.3569 5.1817 30 6 -1.2745 4.0061 2.8695 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.8293 -0.0606 -2.9502 37 1 2.2720 2.1232 1.9978 38 1 -0.9288 5.3904 6.7436 39 1 0.0976 5.8009 8.9422 40 1 2.3759 4.9956 9.4092 41 1 3.6319 3.7713 7.6830 42 1 2.6128 3.3488 5.4833 43 1 -4.0983 3.9184 5.7623 44 1 -1.4202 4.8357 2.1777 45 1 -2.0920 3.2903 2.7839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610133483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:33 Heat of formation + Delta-G solvation = -37.198285 kcal Electronic energy + Delta-G solvation = -30222.938733 eV Core-core repulsion = 26013.957298 eV Total energy + Delta-G solvation = -4208.981435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45967 -39.79484 -39.21404 -38.28530 -36.46376 -35.16984 -33.51388 -32.51123 -31.83512 -31.04143 -30.69185 -29.07866 -27.10327 -25.29697 -24.27302 -23.01197 -22.84691 -21.86912 -20.92590 -19.82144 -19.25977 -18.63611 -18.08647 -17.48447 -17.20269 -16.38554 -16.06777 -15.78333 -15.38394 -15.13447 -14.97952 -14.53955 -14.31214 -14.18191 -13.79911 -13.54741 -13.49332 -13.32073 -12.93371 -12.82853 -12.68940 -12.21883 -11.96854 -11.88605 -11.69872 -11.56510 -11.31082 -11.27194 -11.03513 -10.99293 -10.84798 -10.71772 -10.36517 -10.23339 -9.82135 -9.69596 -9.44414 -9.10085 -9.09479 -8.54155 -7.98892 -7.64078 -6.15225 -4.24635 0.94631 1.25824 1.56987 1.68577 1.97223 2.62986 3.24344 3.31331 3.33503 3.59809 3.62319 3.73247 3.76961 4.08285 4.33044 4.50593 4.70183 4.76132 4.80094 4.95216 5.02168 5.16746 5.25442 5.26752 5.36728 5.41606 5.48965 5.76152 5.91557 6.04933 6.23231 6.29141 6.35671 6.41433 6.43472 6.58059 6.60459 6.99853 7.01010 7.12727 7.23812 7.32794 7.41909 7.46059 7.58570 7.68880 7.84132 8.12142 8.51746 8.68498 8.93320 9.42178 10.90175 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003089 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.161804 B = 9063.461165 C =10858.094738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.681 5.681 14 C 0.577 3.423 15 O -0.532 6.532 16 C 0.048 3.952 17 N -0.180 5.180 18 N -0.451 5.451 19 C 0.232 3.768 20 C -0.173 4.173 21 C -0.081 4.081 22 C -0.162 4.162 23 C -0.081 4.081 24 C -0.152 4.152 25 C 0.121 3.879 26 H 0.128 0.872 27 C 0.466 3.534 28 O -0.487 6.487 29 O -0.511 6.511 30 C -0.097 4.097 31 H 0.025 0.975 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.397 0.603 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.414 0.586 44 H 0.126 0.874 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 10.288 17.827 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.328 5.328 14 C 0.358 3.642 15 O -0.408 6.408 16 C -0.147 4.147 17 N 0.011 4.989 18 N -0.252 5.252 19 C 0.136 3.864 20 C -0.195 4.195 21 C -0.099 4.099 22 C -0.181 4.181 23 C -0.100 4.100 24 C -0.173 4.173 25 C 0.013 3.987 26 H 0.146 0.854 27 C 0.304 3.696 28 O -0.372 6.372 29 O -0.323 6.323 30 C -0.137 4.137 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.231 0.769 38 H 0.129 0.871 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.273 0.727 44 H 0.144 0.856 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.648 9.862 17.329 21.733 hybrid contribution -0.108 -0.146 0.553 0.582 sum -8.756 9.716 17.881 22.154 Atomic orbital electron populations 1.21853 0.98333 0.98302 1.01117 1.21957 0.92634 0.99542 1.02603 1.18944 0.94589 0.89328 0.80342 0.92780 1.21210 0.90452 1.39261 1.06444 0.91889 1.24867 0.98694 0.94691 0.95294 1.69885 1.35193 1.37505 1.09336 0.86437 0.84736 0.78532 0.77366 1.20509 1.21067 1.19795 1.46515 1.13765 1.53430 1.19094 1.16537 0.83775 0.79819 0.84104 1.90859 1.51479 1.60424 1.38034 1.25224 0.94167 1.00895 0.94425 1.74961 1.22765 1.05956 0.95202 1.48050 1.10312 1.56259 1.10608 1.17240 0.92550 0.95424 0.81145 1.20476 1.00102 1.04922 0.94045 1.20803 0.95227 0.98532 0.95387 1.21022 0.95332 1.01922 0.99827 1.21006 0.99652 0.96889 0.92416 1.20829 0.94004 1.03824 0.98629 1.21780 0.81929 1.01482 0.93473 0.85439 1.23621 0.82716 0.81760 0.81483 1.90804 1.80948 1.26832 1.38609 1.84510 1.20618 1.61873 1.65303 1.21878 0.97448 1.02594 0.91790 0.95634 0.94503 0.92949 0.87988 0.94810 0.92492 0.76915 0.87062 0.85837 0.86071 0.85506 0.84642 0.72659 0.85571 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.16 0.32 -2.69 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.50 7.57 -51.93 -0.39 1.11 16 5 C -0.54 -13.84 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.10 11.29 55.43 0.63 -23.48 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.68 -14.02 5.01 -56.37 -0.28 -14.30 16 14 C 0.58 11.09 6.35 -13.02 -0.08 11.00 16 15 O -0.53 -11.45 14.06 5.17 0.07 -11.38 16 16 C 0.05 0.76 7.27 -80.13 -0.58 0.18 16 17 N -0.18 -2.79 10.89 34.92 0.38 -2.41 16 18 N -0.45 -6.22 3.53 -52.29 -0.18 -6.40 16 19 C 0.23 3.11 6.22 -83.78 -0.52 2.59 16 20 C -0.17 -1.98 8.71 -39.36 -0.34 -2.32 16 21 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 22 C -0.16 -1.56 10.04 -39.54 -0.40 -1.96 16 23 C -0.08 -0.87 10.04 -39.61 -0.40 -1.27 16 24 C -0.15 -1.98 9.64 -39.37 -0.38 -2.35 16 25 C 0.12 1.33 3.31 -68.14 -0.23 1.11 16 26 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 27 C 0.47 5.13 5.86 36.00 0.21 5.34 16 28 O -0.49 -7.13 16.49 -18.75 -0.31 -7.44 16 29 O -0.51 -3.81 13.42 -39.26 -0.53 -4.33 16 30 C -0.10 -1.14 6.38 -27.04 -0.17 -1.31 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.77 5.66 -51.93 -0.29 0.48 16 33 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 34 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.40 7.60 8.16 -40.82 -0.33 7.27 16 38 H 0.11 1.12 6.39 -52.49 -0.34 0.79 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.14 1.83 7.66 -52.49 -0.40 1.43 16 43 H 0.41 1.42 9.10 45.56 0.41 1.84 16 44 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.11 1.26 7.73 -51.93 -0.40 0.86 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -32.18 378.51 -8.17 -40.35 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -4.96 Total: 10.48 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.67 Total: -2.12 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.54 Total: -46.59 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.76 Total: -23.15 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.18 -8.17 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610133483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.154 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds