Wall clock time and date at job start Wed Apr 1 2020 03:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 6 6 H 1.07995 * 120.00006 * 240.00415 * 5 3 2 7 7 C 1.37875 * 120.00190 * 59.99565 * 5 3 2 8 8 N 1.31520 * 119.99966 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00189 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47255 * 90.00191 * 9 7 5 11 11 H 1.48503 * 109.46900 * 210.00227 * 9 7 5 12 12 H 1.48494 * 109.46968 * 329.99883 * 9 7 5 13 13 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 14 14 C 1.34777 * 119.99828 * 274.72131 * 13 3 2 15 15 O 1.21723 * 120.00033 * 0.28033 * 14 13 3 16 16 C 1.46293 * 120.00176 * 180.27650 * 14 13 3 17 17 N 1.29433 * 125.27687 * 359.69910 * 16 14 13 18 18 N 1.39342 * 113.99037 * 179.87325 * 17 16 14 19 19 C 1.39601 * 125.53906 * 180.14564 * 18 17 16 20 20 C 1.38970 * 120.07458 * 180.02562 * 19 18 17 21 21 C 1.38093 * 119.91356 * 179.78695 * 20 19 18 22 22 C 1.38297 * 120.08232 * 0.46794 * 21 20 19 23 23 C 1.38298 * 120.15852 * 359.78518 * 22 21 20 24 24 C 1.38091 * 120.08328 * 359.97438 * 23 22 21 25 25 C 1.47128 * 108.91853 * 0.39307 * 18 17 16 26 26 H 1.09001 * 110.58713 * 241.24523 * 25 18 17 27 27 C 1.50696 * 110.71888 * 118.39650 * 25 18 17 28 28 O 1.20830 * 119.99670 * 345.67690 * 27 25 18 29 29 O 1.34231 * 120.00244 * 165.67605 * 27 25 18 30 30 C 1.51192 * 125.28127 * 179.97438 * 16 14 13 31 31 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 33 33 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 34 34 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 35 35 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 36 36 H 0.96995 * 120.00431 * 179.97438 * 8 7 5 37 37 H 0.97001 * 120.00384 * 95.00578 * 13 3 2 38 38 H 1.07995 * 120.04225 * 0.02562 * 20 19 18 39 39 H 1.07999 * 119.95474 * 180.20593 * 21 20 19 40 40 H 1.08000 * 119.92383 * 179.76903 * 22 21 20 41 41 H 1.08006 * 119.95944 * 180.02562 * 23 22 21 42 42 H 1.07992 * 120.04099 * 179.97438 * 24 23 22 43 43 H 0.96707 * 116.99579 * 180.02562 * 29 27 25 44 44 H 1.08997 * 110.53164 * 298.58989 * 30 16 14 45 45 H 1.09004 * 110.52804 * 61.20584 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3373 -2.1733 9 14 6.0051 0.8799 -1.3811 10 1 6.5540 -0.3521 -0.7597 11 1 6.3836 0.9212 -2.8165 12 1 6.5577 2.0718 -0.6889 13 7 1.6525 2.0974 1.2518 14 6 0.4374 2.6692 1.3650 15 8 -0.3400 2.6370 0.4289 16 6 0.0526 3.3286 2.6129 17 7 0.7935 3.4180 3.6704 18 7 0.1932 4.1002 4.7268 19 6 0.7742 4.3383 5.9736 20 6 0.0696 5.0336 6.9489 21 6 0.6459 5.2635 8.1826 22 6 1.9262 4.8112 8.4448 23 6 2.6324 4.1234 7.4747 24 6 2.0607 3.8855 6.2404 25 6 -1.1549 4.5235 4.3166 26 1 -1.2401 5.6098 4.3430 27 6 -2.2029 3.8898 5.1946 28 8 -1.9105 2.9612 5.9103 29 8 -3.4613 4.3569 5.1817 30 6 -1.2745 4.0061 2.8695 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.8293 -0.0606 -2.9502 37 1 2.2720 2.1232 1.9978 38 1 -0.9288 5.3904 6.7436 39 1 0.0976 5.8009 8.9422 40 1 2.3759 4.9956 9.4092 41 1 3.6319 3.7713 7.6830 42 1 2.6128 3.3488 5.4833 43 1 -4.0983 3.9184 5.7623 44 1 -1.4202 4.8357 2.1777 45 1 -2.0920 3.2903 2.7839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610133483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:32 Heat of formation + Delta-G solvation = -58.638117 kcal Electronic energy + Delta-G solvation = -30223.868433 eV Core-core repulsion = 26013.957298 eV Total energy + Delta-G solvation = -4209.911136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.41492 -40.94904 -40.32678 -39.38908 -37.25331 -36.98296 -34.66304 -34.18866 -33.02816 -32.52609 -31.67813 -30.09924 -28.94963 -26.20996 -25.75845 -24.53824 -23.81075 -22.94933 -21.82825 -21.57274 -20.77788 -19.45837 -19.05869 -18.80833 -18.18603 -17.70066 -17.33872 -17.01450 -16.74968 -16.49493 -16.19098 -15.93161 -15.49977 -15.22139 -14.93403 -14.71020 -14.56100 -14.39984 -14.33752 -14.08262 -13.81538 -13.52559 -13.38312 -13.17140 -13.01882 -12.92448 -12.70692 -12.67043 -12.49139 -12.21158 -12.15958 -12.07698 -11.93614 -11.73856 -11.60657 -11.10175 -11.05167 -10.75128 -10.53842 -9.93240 -9.74940 -8.60337 -8.16390 -6.33061 -0.18157 0.42658 0.62528 0.80810 1.03548 1.45570 1.46056 1.56346 1.79659 2.17861 2.26511 2.47942 2.75276 2.89587 3.12271 3.13808 3.55313 3.77405 3.92313 3.99017 4.03878 4.28181 4.34487 4.41329 4.50105 4.51859 4.53745 4.56844 4.62562 4.73578 4.78845 5.06253 5.08838 5.24491 5.33744 5.39614 5.41722 5.45950 5.47652 5.58855 5.62410 5.74756 5.77060 5.86072 6.13405 6.14825 6.36424 6.71601 6.78739 6.84013 7.23805 7.41175 8.88915 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003089 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.161804 B = 9063.461165 C =10858.094738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.013 0.987 5 C -0.551 4.551 6 H 0.067 0.933 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.685 5.685 14 C 0.581 3.419 15 O -0.558 6.558 16 C 0.029 3.971 17 N -0.188 5.188 18 N -0.452 5.452 19 C 0.203 3.797 20 C -0.176 4.176 21 C -0.081 4.081 22 C -0.157 4.157 23 C -0.087 4.087 24 C -0.177 4.177 25 C 0.119 3.881 26 H 0.162 0.838 27 C 0.477 3.523 28 O -0.528 6.528 29 O -0.495 6.495 30 C -0.091 4.091 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.404 0.596 38 H 0.124 0.876 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.118 0.882 43 H 0.434 0.566 44 H 0.149 0.851 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.804 11.819 20.499 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.031 0.969 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.192 1.192 13 N -0.333 5.333 14 C 0.364 3.636 15 O -0.435 6.435 16 C -0.166 4.166 17 N 0.001 4.999 18 N -0.254 5.254 19 C 0.108 3.892 20 C -0.198 4.198 21 C -0.099 4.099 22 C -0.176 4.176 23 C -0.105 4.105 24 C -0.199 4.199 25 C 0.012 3.988 26 H 0.179 0.821 27 C 0.317 3.683 28 O -0.417 6.417 29 O -0.309 6.309 30 C -0.131 4.131 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.238 0.762 38 H 0.142 0.858 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.162 0.838 42 H 0.136 0.864 43 H 0.297 0.703 44 H 0.167 0.833 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.116 11.421 20.036 24.799 hybrid contribution -0.021 -0.551 -0.118 0.564 sum -9.137 10.870 19.918 24.462 Atomic orbital electron populations 1.21696 0.96713 0.99420 1.00429 1.21811 0.94018 0.98931 1.01382 1.18526 0.93862 0.89340 0.80692 0.96867 1.21528 0.91367 1.39273 1.06745 0.91490 1.25683 1.03091 0.94274 0.94940 1.70018 1.36951 1.38123 1.09789 0.85415 0.79368 0.78748 0.77238 1.19860 1.20946 1.19163 1.46289 1.14826 1.54131 1.18103 1.16831 0.82703 0.78967 0.85071 1.90833 1.51996 1.61229 1.39483 1.24652 0.96364 1.02452 0.93101 1.74843 1.23804 1.05518 0.95700 1.48138 1.11305 1.55745 1.10246 1.17575 0.93148 0.96944 0.81533 1.20722 1.00559 1.04386 0.94133 1.21245 0.95428 0.97879 0.95350 1.21425 0.95225 1.00403 1.00574 1.21287 1.00601 0.96809 0.91813 1.20911 0.94495 1.04952 0.99492 1.22048 0.80785 1.03278 0.92663 0.82063 1.23505 0.83504 0.80792 0.80529 1.90799 1.81776 1.28630 1.40478 1.84465 1.19570 1.61400 1.65460 1.21947 0.95263 1.03070 0.92813 0.93518 0.94174 0.94546 0.90455 0.94541 0.92452 0.76165 0.85818 0.82713 0.83119 0.83780 0.86391 0.70344 0.83346 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.52 71.98 0.61 -4.93 16 2 C -0.12 -6.01 5.45 30.60 0.17 -5.85 16 3 C 0.28 14.15 2.24 44.24 0.10 14.25 16 4 H 0.01 0.79 7.57 -2.39 -0.02 0.77 16 5 C -0.55 -29.24 8.73 25.60 0.22 -29.02 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.11 5.29 84.65 0.45 1.56 16 8 N -0.91 -51.20 11.29 21.45 0.24 -50.96 16 9 Si 0.97 42.12 29.54 68.60 2.03 44.15 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 N -0.69 -29.30 5.01 -450.45 -2.26 -31.56 16 14 C 0.58 23.00 6.35 86.34 0.55 23.54 16 15 O -0.56 -24.76 14.06 -4.42 -0.06 -24.82 16 16 C 0.03 0.90 7.27 45.16 0.33 1.23 16 17 N -0.19 -5.90 10.89 -43.42 -0.47 -6.38 16 18 N -0.45 -12.13 3.53 -319.36 -1.13 -13.26 16 19 C 0.20 5.27 6.22 38.25 0.24 5.51 16 20 C -0.18 -3.63 8.71 22.41 0.20 -3.43 16 21 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 22 C -0.16 -2.57 10.04 22.30 0.22 -2.35 16 23 C -0.09 -1.74 10.04 22.25 0.22 -1.51 16 24 C -0.18 -4.61 9.64 22.41 0.22 -4.40 16 25 C 0.12 2.40 3.31 44.51 0.15 2.54 16 26 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 27 C 0.48 9.51 5.86 71.23 0.42 9.93 16 28 O -0.53 -14.85 16.49 21.95 0.36 -14.49 16 29 O -0.50 -5.88 13.42 -51.43 -0.69 -6.57 16 30 C -0.09 -2.03 6.38 30.39 0.19 -1.84 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.72 5.66 -2.39 -0.01 1.71 16 33 H 0.04 1.69 7.85 -2.39 -0.02 1.67 16 34 H 0.08 4.21 5.95 -2.39 -0.01 4.19 16 35 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.40 16.05 8.16 -92.71 -0.76 15.29 16 38 H 0.12 2.15 6.39 -2.91 -0.02 2.13 16 39 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.12 3.36 7.66 -2.91 -0.02 3.34 16 43 H 0.43 1.66 9.10 -74.05 -0.67 0.98 16 44 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.11 2.44 7.73 -2.39 -0.02 2.43 16 Total: -1.00 -72.12 378.51 2.15 -69.97 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.37 Total: 29.77 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.50 Total: 4.15 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -3.62 Total: -102.15 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -0.39 Total: -45.88 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -72.12 2.15 -69.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610133483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.330 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds