Wall clock time and date at job start Wed Apr 1 2020 03:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21723 * 120.00180 * 359.72124 * 14 13 3 16 16 C 1.46286 * 119.99619 * 179.72465 * 14 13 3 17 17 N 1.29436 * 125.28368 * 359.68948 * 16 14 13 18 18 N 1.39337 * 113.99236 * 179.85036 * 17 16 14 19 19 C 1.39604 * 125.53930 * 180.19439 * 18 17 16 20 20 C 1.38969 * 120.07841 * 179.97438 * 19 18 17 21 21 C 1.38092 * 119.91559 * 179.74040 * 20 19 18 22 22 C 1.38298 * 120.08046 * 0.53828 * 21 20 19 23 23 C 1.38302 * 120.16239 * 359.71371 * 22 21 20 24 24 C 1.38091 * 120.07738 * 0.02964 * 23 22 21 25 25 C 1.47129 * 108.91773 * 0.41778 * 18 17 16 26 26 H 1.09000 * 110.58103 * 118.32411 * 25 18 17 27 27 C 1.50706 * 110.58298 * 241.22713 * 25 18 17 28 28 O 1.20819 * 120.00263 * 14.25230 * 27 25 18 29 29 O 1.34230 * 119.99562 * 194.24777 * 27 25 18 30 30 C 1.51199 * 125.28097 * 179.97438 * 16 14 13 31 31 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 33 33 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 34 34 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 35 35 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 36 36 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 37 37 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 38 38 H 1.07997 * 120.04172 * 0.02562 * 20 19 18 39 39 H 1.07999 * 119.95525 * 180.25482 * 21 20 19 40 40 H 1.08001 * 119.92031 * 179.74262 * 22 21 20 41 41 H 1.07987 * 119.96145 * 180.02562 * 23 22 21 42 42 H 1.07993 * 120.04189 * 179.97438 * 24 23 22 43 43 H 0.96705 * 116.99661 * 180.02562 * 29 27 25 44 44 H 1.09005 * 110.52899 * 298.60359 * 30 16 14 45 45 H 1.08997 * 110.52691 * 61.21347 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3402 2.6371 -0.4288 16 6 0.0524 3.3286 -2.6128 17 7 0.7975 3.4279 -3.6665 18 7 0.1938 4.1022 -4.7259 19 6 0.7756 4.3422 -5.9720 20 6 0.0674 5.0291 -6.9507 21 6 0.6481 5.2694 -8.1803 22 6 1.9288 4.8177 -8.4421 23 6 2.6347 4.1292 -7.4723 24 6 2.0623 3.8899 -6.2386 25 6 -1.1545 4.5249 -4.3158 26 1 -1.2399 5.6112 -4.3414 27 6 -2.1996 3.8890 -5.1959 28 8 -1.9038 2.9617 -5.9118 29 8 -3.4592 4.3527 -5.1843 30 6 -1.2751 4.0053 -2.8698 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.8293 -0.0619 2.9495 37 1 2.2719 2.1232 -1.9977 38 1 -0.9343 5.3785 -6.7483 39 1 0.0998 5.8067 -8.9399 40 1 2.3789 5.0034 -9.4061 41 1 3.6346 3.7784 -7.6801 42 1 2.6139 3.3519 -5.4819 43 1 -4.0945 3.9125 -5.7656 44 1 -2.0918 3.2880 -2.7881 45 1 -1.4232 4.8324 -2.1755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610133484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:37 Heat of formation + Delta-G solvation = -37.079489 kcal Electronic energy + Delta-G solvation = -30224.849934 eV Core-core repulsion = 26015.873651 eV Total energy + Delta-G solvation = -4208.976283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46286 -39.79410 -39.21320 -38.28551 -36.46401 -35.16973 -33.51300 -32.51146 -31.83514 -31.04164 -30.69183 -29.07831 -27.10297 -25.29411 -24.27344 -23.01070 -22.84618 -21.86889 -20.92673 -19.82128 -19.25988 -18.63505 -18.08465 -17.48323 -17.20611 -16.38940 -16.06617 -15.78297 -15.38314 -15.13150 -14.98084 -14.53842 -14.31056 -14.18358 -13.79743 -13.54678 -13.49263 -13.32082 -12.93677 -12.82688 -12.68918 -12.21877 -11.96783 -11.88587 -11.69720 -11.56384 -11.31237 -11.27391 -11.02652 -10.98071 -10.86779 -10.71688 -10.36575 -10.23412 -9.82078 -9.68956 -9.44177 -9.10343 -9.09997 -8.53613 -7.98994 -7.63976 -6.15243 -4.24619 0.94616 1.25899 1.57165 1.68614 1.97212 2.63027 3.24458 3.31342 3.33442 3.59829 3.62332 3.73250 3.76889 4.08273 4.33045 4.50637 4.70227 4.76168 4.80107 4.95216 5.02213 5.16792 5.25406 5.26832 5.36739 5.41659 5.49000 5.76197 5.91604 6.05034 6.23271 6.29192 6.35671 6.41465 6.43517 6.58115 6.60547 6.99904 7.01060 7.12742 7.23834 7.32844 7.41967 7.46168 7.58580 7.68913 7.84141 8.12196 8.51786 8.68503 8.93324 9.42192 10.90164 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003089 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.660807 B = 9062.127308 C =10856.723788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.681 5.681 14 C 0.577 3.423 15 O -0.532 6.532 16 C 0.048 3.952 17 N -0.180 5.180 18 N -0.451 5.451 19 C 0.232 3.768 20 C -0.173 4.173 21 C -0.081 4.081 22 C -0.162 4.162 23 C -0.081 4.081 24 C -0.152 4.152 25 C 0.121 3.879 26 H 0.128 0.872 27 C 0.466 3.534 28 O -0.486 6.486 29 O -0.511 6.511 30 C -0.097 4.097 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.102 0.898 36 H 0.265 0.735 37 H 0.397 0.603 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.414 0.586 44 H 0.110 0.890 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 10.274 -17.834 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.328 5.328 14 C 0.358 3.642 15 O -0.408 6.408 16 C -0.147 4.147 17 N 0.011 4.989 18 N -0.253 5.253 19 C 0.136 3.864 20 C -0.195 4.195 21 C -0.100 4.100 22 C -0.181 4.181 23 C -0.100 4.100 24 C -0.173 4.173 25 C 0.013 3.987 26 H 0.146 0.854 27 C 0.304 3.696 28 O -0.372 6.372 29 O -0.323 6.323 30 C -0.137 4.137 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.231 0.769 38 H 0.129 0.871 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.273 0.727 44 H 0.129 0.871 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.652 9.849 -17.337 21.735 hybrid contribution -0.106 -0.126 -0.541 0.565 sum -8.757 9.723 -17.878 22.155 Atomic orbital electron populations 1.21853 0.98332 0.98303 1.01117 1.21952 0.92632 0.99539 1.02607 1.18943 0.94590 0.89334 0.80339 0.92793 1.21211 0.90455 1.39257 1.06449 0.91890 1.24866 0.98698 0.94668 0.95315 1.69885 1.35203 1.37481 1.09344 0.86435 0.84714 0.77649 0.78264 1.20535 1.21064 1.19776 1.46516 1.13760 1.53432 1.19100 1.16535 0.83772 0.79828 0.84097 1.90859 1.51477 1.60436 1.38025 1.25224 0.94085 1.00897 0.94520 1.74960 1.22770 1.05966 0.95177 1.48040 1.10137 1.56622 1.10462 1.17241 0.92522 0.95453 0.81147 1.20475 0.99961 1.05013 0.94067 1.20803 0.95210 0.98506 0.95447 1.21024 0.95370 1.01890 0.99813 1.21004 0.99647 0.96903 0.92416 1.20830 0.94037 1.03774 0.98634 1.21784 0.81944 1.01458 0.93467 0.85443 1.23610 0.82685 0.81765 0.81503 1.90801 1.80857 1.26885 1.38616 1.84510 1.20614 1.61911 1.65281 1.21877 0.97462 1.02558 0.91818 0.95634 0.92952 0.94503 0.94803 0.87984 0.92494 0.76912 0.87072 0.85837 0.86072 0.85508 0.84644 0.72661 0.87140 0.85556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.69 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.56 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.50 7.57 -51.93 -0.39 1.10 16 5 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.10 11.29 55.43 0.63 -23.48 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.68 -14.02 5.01 -56.37 -0.28 -14.30 16 14 C 0.58 11.09 6.35 -13.03 -0.08 11.00 16 15 O -0.53 -11.45 14.06 5.17 0.07 -11.38 16 16 C 0.05 0.76 7.27 -80.12 -0.58 0.17 16 17 N -0.18 -2.79 10.89 34.93 0.38 -2.41 16 18 N -0.45 -6.22 3.53 -52.29 -0.18 -6.40 16 19 C 0.23 3.11 6.22 -83.78 -0.52 2.59 16 20 C -0.17 -1.97 8.69 -39.36 -0.34 -2.32 16 21 C -0.08 -0.80 10.04 -39.61 -0.40 -1.19 16 22 C -0.16 -1.56 10.04 -39.54 -0.40 -1.96 16 23 C -0.08 -0.87 10.04 -39.61 -0.40 -1.27 16 24 C -0.15 -1.98 9.64 -39.36 -0.38 -2.35 16 25 C 0.12 1.33 3.33 -68.15 -0.23 1.11 16 26 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 27 C 0.47 5.13 5.83 36.01 0.21 5.34 16 28 O -0.49 -7.12 16.46 -18.74 -0.31 -7.43 16 29 O -0.51 -3.81 13.42 -39.26 -0.53 -4.33 16 30 C -0.10 -1.14 6.38 -27.05 -0.17 -1.31 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 33 H 0.04 0.77 5.66 -51.93 -0.29 0.48 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.40 7.60 8.16 -40.82 -0.33 7.27 16 38 H 0.11 1.13 6.37 -52.49 -0.33 0.79 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.14 1.83 7.66 -52.49 -0.40 1.43 16 43 H 0.41 1.42 9.10 45.56 0.41 1.84 16 44 H 0.11 1.26 7.73 -51.93 -0.40 0.86 16 45 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -32.17 378.41 -8.17 -40.34 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.96 Total: 10.49 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.67 Total: -2.13 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.54 Total: -46.59 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.76 Total: -23.14 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.17 -8.17 -40.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610133484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.259 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds