Wall clock time and date at job start Wed Apr 1 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21723 * 120.00180 * 359.72124 * 14 13 3 16 16 C 1.46286 * 119.99619 * 179.72465 * 14 13 3 17 17 N 1.29436 * 125.28368 * 359.68948 * 16 14 13 18 18 N 1.39337 * 113.99236 * 179.85036 * 17 16 14 19 19 C 1.39604 * 125.53930 * 180.19439 * 18 17 16 20 20 C 1.38969 * 120.07841 * 179.97438 * 19 18 17 21 21 C 1.38092 * 119.91559 * 179.74040 * 20 19 18 22 22 C 1.38298 * 120.08046 * 0.53828 * 21 20 19 23 23 C 1.38302 * 120.16239 * 359.71371 * 22 21 20 24 24 C 1.38091 * 120.07738 * 0.02964 * 23 22 21 25 25 C 1.47129 * 108.91773 * 0.41778 * 18 17 16 26 26 H 1.09000 * 110.58103 * 118.32411 * 25 18 17 27 27 C 1.50706 * 110.58298 * 241.22713 * 25 18 17 28 28 O 1.20819 * 120.00263 * 14.25230 * 27 25 18 29 29 O 1.34230 * 119.99562 * 194.24777 * 27 25 18 30 30 C 1.51199 * 125.28097 * 179.97438 * 16 14 13 31 31 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 33 33 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 34 34 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 35 35 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 36 36 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 37 37 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 38 38 H 1.07997 * 120.04172 * 0.02562 * 20 19 18 39 39 H 1.07999 * 119.95525 * 180.25482 * 21 20 19 40 40 H 1.08001 * 119.92031 * 179.74262 * 22 21 20 41 41 H 1.07987 * 119.96145 * 180.02562 * 23 22 21 42 42 H 1.07993 * 120.04189 * 179.97438 * 24 23 22 43 43 H 0.96705 * 116.99661 * 180.02562 * 29 27 25 44 44 H 1.09005 * 110.52899 * 298.60359 * 30 16 14 45 45 H 1.08997 * 110.52691 * 61.21347 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3402 2.6371 -0.4288 16 6 0.0524 3.3286 -2.6128 17 7 0.7975 3.4279 -3.6665 18 7 0.1938 4.1022 -4.7259 19 6 0.7756 4.3422 -5.9720 20 6 0.0674 5.0291 -6.9507 21 6 0.6481 5.2694 -8.1803 22 6 1.9288 4.8177 -8.4421 23 6 2.6347 4.1292 -7.4723 24 6 2.0623 3.8899 -6.2386 25 6 -1.1545 4.5249 -4.3158 26 1 -1.2399 5.6112 -4.3414 27 6 -2.1996 3.8890 -5.1959 28 8 -1.9038 2.9617 -5.9118 29 8 -3.4592 4.3527 -5.1843 30 6 -1.2751 4.0053 -2.8698 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.8293 -0.0619 2.9495 37 1 2.2719 2.1232 -1.9977 38 1 -0.9343 5.3785 -6.7483 39 1 0.0998 5.8067 -8.9399 40 1 2.3789 5.0034 -9.4061 41 1 3.6346 3.7784 -7.6801 42 1 2.6139 3.3519 -5.4819 43 1 -4.0945 3.9125 -5.7656 44 1 -2.0918 3.2880 -2.7881 45 1 -1.4232 4.8324 -2.1755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610133484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:36 Heat of formation + Delta-G solvation = -58.503936 kcal Electronic energy + Delta-G solvation = -30225.778968 eV Core-core repulsion = 26015.873651 eV Total energy + Delta-G solvation = -4209.905317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.41791 -40.94923 -40.32541 -39.38960 -37.25306 -36.98292 -34.66287 -34.18873 -33.02837 -32.52596 -31.67868 -30.09928 -28.94933 -26.20711 -25.75878 -24.53812 -23.80935 -22.94925 -21.82927 -21.57246 -20.77816 -19.45795 -19.05583 -18.80864 -18.18751 -17.70254 -17.34031 -17.01766 -16.74613 -16.49269 -16.19191 -15.93124 -15.49705 -15.22284 -14.93276 -14.70931 -14.56017 -14.40102 -14.33736 -14.08229 -13.81734 -13.52589 -13.38305 -13.17325 -13.01920 -12.90923 -12.70686 -12.68717 -12.49068 -12.21109 -12.15746 -12.07655 -11.93557 -11.73811 -11.59697 -11.09900 -11.06138 -10.75080 -10.53556 -9.93234 -9.75011 -8.60263 -8.16405 -6.33050 -0.18216 0.42681 0.62668 0.80854 1.03526 1.45499 1.46110 1.56466 1.79749 2.17861 2.26481 2.47976 2.75234 2.89513 3.12281 3.13832 3.55275 3.77451 3.92254 3.99016 4.03861 4.28155 4.34452 4.41316 4.50166 4.51868 4.53729 4.56892 4.62556 4.73654 4.78864 5.06300 5.08836 5.24523 5.33762 5.39751 5.41793 5.45945 5.47672 5.58854 5.62398 5.74776 5.77119 5.86061 6.13409 6.14884 6.36449 6.71605 6.78893 6.84018 7.23791 7.41174 8.88908 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003089 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.660807 B = 9062.127308 C =10856.723788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.013 0.987 5 C -0.551 4.551 6 H 0.067 0.933 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.967 3.033 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.265 1.265 13 N -0.685 5.685 14 C 0.581 3.419 15 O -0.558 6.558 16 C 0.028 3.972 17 N -0.188 5.188 18 N -0.452 5.452 19 C 0.203 3.797 20 C -0.176 4.176 21 C -0.081 4.081 22 C -0.157 4.157 23 C -0.087 4.087 24 C -0.177 4.177 25 C 0.119 3.881 26 H 0.162 0.838 27 C 0.477 3.523 28 O -0.528 6.528 29 O -0.496 6.496 30 C -0.091 4.091 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.266 0.734 37 H 0.404 0.596 38 H 0.124 0.876 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.118 0.882 43 H 0.434 0.566 44 H 0.113 0.887 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.811 11.803 -20.513 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.031 0.969 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.792 3.208 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.189 1.189 13 N -0.333 5.333 14 C 0.364 3.636 15 O -0.435 6.435 16 C -0.166 4.166 17 N 0.002 4.998 18 N -0.255 5.255 19 C 0.108 3.892 20 C -0.198 4.198 21 C -0.099 4.099 22 C -0.176 4.176 23 C -0.105 4.105 24 C -0.198 4.198 25 C 0.012 3.988 26 H 0.179 0.821 27 C 0.317 3.683 28 O -0.416 6.416 29 O -0.309 6.309 30 C -0.131 4.131 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.238 0.762 38 H 0.142 0.858 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.162 0.838 42 H 0.136 0.864 43 H 0.297 0.703 44 H 0.131 0.869 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.119 11.406 -20.052 24.806 hybrid contribution -0.019 -0.529 0.133 0.546 sum -9.138 10.877 -19.919 24.466 Atomic orbital electron populations 1.21696 0.96714 0.99423 1.00426 1.21806 0.94015 0.98924 1.01390 1.18527 0.93864 0.89348 0.80687 0.96886 1.21530 0.91369 1.39264 1.06753 0.91486 1.25683 1.03095 0.94253 0.94962 1.70018 1.36962 1.38098 1.09798 0.85416 0.79362 0.77560 0.78447 1.20254 1.20788 1.18913 1.46289 1.14820 1.54134 1.18107 1.16829 0.82699 0.78977 0.85062 1.90833 1.51993 1.61243 1.39473 1.24652 0.96285 1.02452 0.93202 1.74842 1.23819 1.05512 0.95671 1.48127 1.11125 1.56126 1.10091 1.17575 0.93116 0.96969 0.81533 1.20720 1.00423 1.04488 0.94149 1.21244 0.95411 0.97847 0.95404 1.21427 0.95261 1.00374 1.00556 1.21284 1.00593 0.96822 0.91814 1.20912 0.94532 1.04901 0.99496 1.22052 0.80796 1.03250 0.92660 0.82076 1.23492 0.83472 0.80797 0.80552 1.90797 1.81684 1.28678 1.40480 1.84464 1.19557 1.61446 1.65441 1.21946 0.95279 1.03027 0.92842 0.93514 0.94554 0.94172 0.94525 0.90452 0.92452 0.76166 0.85842 0.82710 0.83118 0.83787 0.86399 0.70346 0.86901 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.52 71.98 0.61 -4.93 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.15 2.24 44.25 0.10 14.25 16 4 H 0.01 0.78 7.57 -2.39 -0.02 0.76 16 5 C -0.55 -29.25 8.73 25.60 0.22 -29.02 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.11 5.29 84.65 0.45 1.55 16 8 N -0.91 -51.20 11.29 21.45 0.24 -50.96 16 9 Si 0.97 42.12 29.54 68.60 2.03 44.14 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 13 N -0.69 -29.30 5.01 -450.45 -2.26 -31.56 16 14 C 0.58 23.00 6.35 86.33 0.55 23.55 16 15 O -0.56 -24.76 14.06 -4.42 -0.06 -24.83 16 16 C 0.03 0.90 7.27 45.16 0.33 1.22 16 17 N -0.19 -5.90 10.89 -43.42 -0.47 -6.37 16 18 N -0.45 -12.15 3.53 -319.36 -1.13 -13.27 16 19 C 0.20 5.27 6.22 38.25 0.24 5.51 16 20 C -0.18 -3.63 8.69 22.41 0.19 -3.43 16 21 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 22 C -0.16 -2.57 10.04 22.30 0.22 -2.34 16 23 C -0.09 -1.74 10.04 22.25 0.22 -1.52 16 24 C -0.18 -4.61 9.64 22.41 0.22 -4.39 16 25 C 0.12 2.40 3.33 44.51 0.15 2.55 16 26 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 27 C 0.48 9.51 5.83 71.24 0.42 9.93 16 28 O -0.53 -14.83 16.46 21.98 0.36 -14.46 16 29 O -0.50 -5.88 13.42 -51.42 -0.69 -6.57 16 30 C -0.09 -2.03 6.38 30.39 0.19 -1.84 16 31 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.04 1.69 7.85 -2.39 -0.02 1.67 16 33 H 0.04 1.72 5.66 -2.39 -0.01 1.71 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 4.21 5.95 -2.39 -0.01 4.19 16 36 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.40 16.06 8.16 -92.71 -0.76 15.30 16 38 H 0.12 2.15 6.37 -2.91 -0.02 2.13 16 39 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 41 H 0.14 2.25 8.06 -2.92 -0.02 2.22 16 42 H 0.12 3.36 7.66 -2.91 -0.02 3.34 16 43 H 0.43 1.65 9.10 -74.05 -0.67 0.98 16 44 H 0.11 2.44 7.73 -2.38 -0.02 2.42 16 45 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -72.09 378.41 2.15 -69.94 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.37 Total: 29.79 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.50 Total: 4.14 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -3.62 Total: -102.16 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -0.39 Total: -45.86 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -72.09 2.15 -69.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610133484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.434 kcal (2) G-P(sol) polarization free energy of solvation -72.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds