Wall clock time and date at job start Wed Apr 1 2020 03:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99789 * 2 1 4 4 N 1.46507 * 109.47200 * 125.00471 * 3 2 1 5 5 C 1.46502 * 120.00069 * 89.99620 * 4 3 2 6 6 C 1.50703 * 109.47074 * 270.00476 * 5 4 3 7 7 H 1.07993 * 120.00311 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99726 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00131 * 179.97438 * 8 6 5 10 10 Si 1.86809 * 120.00070 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47135 * 90.00050 * 10 8 6 12 12 H 1.48505 * 109.46721 * 209.99860 * 10 8 6 13 13 H 1.48503 * 109.46991 * 329.99795 * 10 8 6 14 14 C 1.34774 * 119.99829 * 270.00224 * 4 3 2 15 15 O 1.21583 * 120.00100 * 179.97438 * 14 4 3 16 16 N 1.34777 * 119.99753 * 359.97438 * 14 4 3 17 17 C 1.39947 * 119.99473 * 174.70148 * 16 14 4 18 18 C 1.38929 * 120.03875 * 146.80993 * 17 16 14 19 19 C 1.38128 * 120.03922 * 179.97438 * 18 17 16 20 20 C 1.38213 * 120.12240 * 0.02562 * 19 18 17 21 21 C 1.38766 * 120.08484 * 359.97438 * 20 19 18 22 22 O 1.35896 * 120.01902 * 180.02562 * 21 20 19 23 23 C 1.42902 * 116.99933 * 359.97438 * 22 21 20 24 24 H 1.08994 * 112.92230 * 38.51328 * 23 22 21 25 25 C 1.53731 * 113.70561 * 170.00352 * 23 22 21 26 26 C 1.51511 * 86.60900 * 114.39918 * 25 23 22 27 27 O 1.21284 * 134.17594 * 179.97438 * 26 25 23 28 28 N 1.35832 * 91.64714 * 359.97438 * 26 25 23 29 29 C 1.38629 * 119.95524 * 359.76225 * 21 20 19 30 30 H 1.07998 * 120.00328 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99796 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00328 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47459 * 5.00054 * 3 2 1 34 34 H 1.08998 * 109.47102 * 244.99915 * 3 2 1 35 35 H 1.09000 * 109.46873 * 150.00048 * 5 4 3 36 36 H 1.09000 * 109.46963 * 30.00212 * 5 4 3 37 37 H 0.97003 * 120.00161 * 179.97438 * 9 8 6 38 38 H 0.96999 * 120.00637 * 354.70711 * 16 14 4 39 39 H 1.08002 * 119.98057 * 359.97335 * 18 17 16 40 40 H 1.07998 * 119.93509 * 179.97438 * 19 18 17 41 41 H 1.08004 * 119.95292 * 179.97438 * 20 19 18 42 42 H 1.09003 * 113.68961 * 228.82463 * 25 23 22 43 43 H 1.09001 * 113.69337 * 359.96302 * 25 23 22 44 44 H 0.97007 * 132.37555 * 180.02562 * 28 26 25 45 45 H 1.08005 * 120.05382 * 180.25517 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3590 0.8257 0.9693 6 6 4.3926 -0.6439 1.3016 7 1 3.4877 -1.1500 1.6038 8 6 5.5788 -1.3419 1.2210 9 7 5.6082 -2.6242 1.5114 10 14 7.1442 -0.4663 0.6990 11 1 7.8320 0.0751 1.8985 12 1 8.0404 -1.4260 0.0054 13 1 6.8045 0.6481 -0.2220 14 6 2.5937 1.8222 2.3214 15 8 3.3657 1.8441 3.2604 16 7 1.3379 2.2883 2.4703 17 6 0.8873 2.6942 3.7315 18 6 -0.0199 3.7406 3.8423 19 6 -0.4651 4.1408 5.0871 20 6 -0.0094 3.5024 6.2251 21 6 0.8967 2.4566 6.1203 22 8 1.3436 1.8294 7.2401 23 6 0.8390 2.2991 8.4918 24 1 -0.2157 2.5708 8.4493 25 6 1.1965 1.3933 9.6814 26 6 2.0299 2.5495 10.1954 27 8 2.7255 2.7206 11.1742 28 7 1.6912 3.3191 9.1286 29 6 1.3416 2.0485 4.8724 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4027 -0.9314 35 1 5.0285 1.3652 1.6393 36 1 4.6809 0.9725 -0.0617 37 1 6.4428 -3.1154 1.4543 38 1 0.7464 2.3424 1.7034 39 1 -0.3772 4.2414 2.9547 40 1 -1.1700 4.9547 5.1713 41 1 -0.3590 3.8178 7.1971 42 1 0.3457 1.1498 10.3177 43 1 1.7847 0.5184 9.4044 44 1 1.9279 4.2248 8.8744 45 1 2.0437 1.2321 4.7888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625587841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:23 Heat of formation + Delta-G solvation = 4.034172 kcal Electronic energy + Delta-G solvation = -29666.318434 eV Core-core repulsion = 25459.124972 eV Total energy + Delta-G solvation = -4207.193461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27406 -40.42755 -39.26321 -37.67957 -36.20121 -35.82761 -34.35019 -33.05829 -32.19039 -30.42864 -29.58332 -28.84652 -27.92845 -25.76438 -24.93890 -23.29187 -22.57877 -21.56402 -20.13988 -20.03546 -19.32455 -18.92491 -17.94484 -17.72675 -17.00698 -16.88164 -16.49625 -16.17619 -15.73075 -15.21115 -14.92841 -14.78565 -14.61704 -14.47479 -13.95462 -13.65872 -13.49145 -13.43975 -13.13929 -13.02538 -12.73768 -12.47766 -12.31825 -12.24653 -11.89514 -11.85739 -11.48950 -11.29258 -11.10998 -10.86843 -10.55890 -10.39793 -10.23938 -10.07804 -9.82084 -9.70024 -9.41586 -9.18206 -8.60463 -8.42939 -8.14197 -7.77287 -6.10307 -4.09221 1.26287 1.39879 2.10375 2.42611 2.69963 2.85511 3.09616 3.28257 3.33772 3.36934 3.51923 3.61256 3.93070 4.13252 4.31716 4.34982 4.37953 4.73110 4.91217 5.02658 5.08253 5.15027 5.19145 5.20730 5.21840 5.37367 5.50455 5.59003 5.74742 5.81571 5.85196 6.16920 6.20588 6.21247 6.31372 6.39652 6.51696 6.55351 6.80212 6.90863 6.94438 6.96130 7.15434 7.29235 7.38252 7.58428 7.92206 8.32186 8.44709 8.92433 9.03141 9.49638 11.02746 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.003049 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.553536 B = 9180.706207 C =11108.229043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.139 3.861 4 N -0.599 5.599 5 C 0.229 3.771 6 C -0.528 4.528 7 H 0.077 0.923 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.702 3.298 15 O -0.561 6.561 16 N -0.692 5.692 17 C 0.222 3.778 18 C -0.188 4.188 19 C -0.061 4.061 20 C -0.236 4.236 21 C 0.142 3.858 22 O -0.298 6.298 23 C 0.289 3.711 24 H 0.120 0.880 25 C -0.166 4.166 26 C 0.539 3.461 27 O -0.499 6.499 28 N -0.751 5.751 29 C -0.147 4.147 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.404 0.596 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.403 0.597 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 12.698 5.209 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.168 4.168 3 C 0.016 3.984 4 N -0.333 5.333 5 C 0.109 3.891 6 C -0.567 4.567 7 H 0.095 0.905 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.404 3.596 15 O -0.436 6.436 16 N -0.341 5.341 17 C 0.125 3.875 18 C -0.209 4.209 19 C -0.080 4.080 20 C -0.255 4.255 21 C 0.097 3.903 22 O -0.207 6.207 23 C 0.147 3.853 24 H 0.137 0.863 25 C -0.206 4.206 26 C 0.324 3.676 27 O -0.371 6.371 28 N -0.420 5.420 29 C -0.169 4.169 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.146 0.854 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.241 0.759 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.244 0.756 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.408 12.388 6.323 21.510 hybrid contribution 0.547 0.859 -0.949 1.391 sum -15.861 13.247 5.375 21.353 Atomic orbital electron populations 1.23704 0.95710 1.01309 1.03706 1.23667 0.95885 1.00460 0.96803 1.20573 0.92211 0.94403 0.91250 1.47255 1.14869 1.62998 1.08154 1.19679 0.76912 0.95673 0.96856 1.21333 0.96992 0.91906 1.46456 0.90494 1.24836 0.98592 0.94729 0.94733 1.69887 1.27159 1.07712 1.48659 0.86890 0.83900 0.79720 0.79381 1.19908 1.21102 1.19103 1.15867 0.81167 0.78515 0.84079 1.90940 1.52799 1.61101 1.38737 1.42985 1.14250 1.67996 1.08884 1.17169 0.93833 0.92030 0.84445 1.20768 1.03451 0.98322 0.98384 1.20580 0.98009 0.98189 0.91174 1.21054 1.03861 1.00963 0.99655 1.18667 0.93480 0.92147 0.85983 1.86278 1.66525 1.55495 1.12430 1.23433 0.93735 0.85857 0.82251 0.86288 1.24012 1.02243 1.00059 0.94303 1.21799 0.79085 0.85351 0.81369 1.90795 1.38895 1.79431 1.27936 1.49476 1.51492 1.16780 1.24261 1.20505 1.04482 1.03540 0.88361 0.89351 0.88525 0.85410 0.91898 0.89134 0.94310 0.94957 0.92551 0.75887 0.85724 0.85560 0.85875 0.85346 0.85234 0.75590 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.51 14.32 29.02 0.42 -2.09 16 2 C -0.15 -2.24 9.85 -36.02 -0.35 -2.60 16 3 C 0.14 2.03 5.70 -5.19 -0.03 2.00 16 4 N -0.60 -11.71 2.44 -182.18 -0.44 -12.16 16 5 C 0.23 5.38 4.27 -5.19 -0.02 5.36 16 6 C -0.53 -14.59 9.83 -34.44 -0.34 -14.93 16 7 H 0.08 2.33 7.70 -52.49 -0.40 1.92 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 10 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 14 C 0.70 14.08 8.01 -86.92 -0.70 13.38 16 15 O -0.56 -13.66 13.62 5.29 0.07 -13.59 16 16 N -0.69 -10.52 5.22 -14.24 -0.07 -10.59 16 17 C 0.22 3.27 6.27 -83.71 -0.53 2.74 16 18 C -0.19 -2.08 9.96 -39.37 -0.39 -2.48 16 19 C -0.06 -0.58 10.03 -39.63 -0.40 -0.98 16 20 C -0.24 -2.40 9.05 -39.40 -0.36 -2.75 16 21 C 0.14 1.91 6.68 -39.24 -0.26 1.65 16 22 O -0.30 -3.83 10.30 -19.41 -0.20 -4.03 16 23 C 0.29 2.44 4.38 -3.34 -0.01 2.43 16 24 H 0.12 0.64 6.46 -51.93 -0.34 0.30 16 25 C -0.17 -1.23 8.12 -27.14 -0.22 -1.45 16 26 C 0.54 5.95 9.85 -10.27 -0.10 5.85 16 27 O -0.50 -7.52 18.03 5.55 0.10 -7.42 16 28 N -0.75 -7.02 7.42 -62.62 -0.46 -7.48 16 29 C -0.15 -2.44 8.59 -39.25 -0.34 -2.78 16 30 H 0.09 0.85 7.84 -52.49 -0.41 0.44 16 31 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 2.36 7.59 -52.49 -0.40 1.96 16 33 H 0.06 0.69 5.94 -51.93 -0.31 0.38 16 34 H 0.09 1.22 7.89 -51.93 -0.41 0.81 16 35 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 36 H 0.03 0.71 6.95 -51.93 -0.36 0.35 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.40 4.81 6.51 -40.82 -0.27 4.54 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.89 6.02 -52.48 -0.32 0.58 16 42 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.13 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.40 3.40 8.96 -40.82 -0.37 3.03 16 45 H 0.15 3.07 6.42 -52.48 -0.34 2.74 16 LS Contribution 383.51 15.07 5.78 5.78 Total: -1.00 -36.65 383.51 -8.41 -45.05 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.55 Total: 8.90 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.73 Total: 5.35 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.21 Total: -56.57 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.03 Total: -25.03 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.65 -8.41 -45.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625587841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.089 kcal (2) G-P(sol) polarization free energy of solvation -36.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds