Wall clock time and date at job start Wed Apr 1 2020 03:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99789 * 2 1 4 4 N 1.46507 * 109.47200 * 125.00471 * 3 2 1 5 5 C 1.46502 * 120.00069 * 89.99620 * 4 3 2 6 6 C 1.50703 * 109.47074 * 270.00476 * 5 4 3 7 7 H 1.07993 * 120.00311 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99726 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00131 * 179.97438 * 8 6 5 10 10 Si 1.86809 * 120.00070 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47135 * 90.00050 * 10 8 6 12 12 H 1.48505 * 109.46721 * 209.99860 * 10 8 6 13 13 H 1.48503 * 109.46991 * 329.99795 * 10 8 6 14 14 C 1.34774 * 119.99829 * 270.00224 * 4 3 2 15 15 O 1.21583 * 120.00100 * 179.97438 * 14 4 3 16 16 N 1.34777 * 119.99753 * 359.97438 * 14 4 3 17 17 C 1.39947 * 119.99473 * 174.70148 * 16 14 4 18 18 C 1.38929 * 120.03875 * 146.80993 * 17 16 14 19 19 C 1.38128 * 120.03922 * 179.97438 * 18 17 16 20 20 C 1.38213 * 120.12240 * 0.02562 * 19 18 17 21 21 C 1.38766 * 120.08484 * 359.97438 * 20 19 18 22 22 O 1.35896 * 120.01902 * 180.02562 * 21 20 19 23 23 C 1.42902 * 116.99933 * 359.97438 * 22 21 20 24 24 H 1.08994 * 112.92230 * 38.51328 * 23 22 21 25 25 C 1.53731 * 113.70561 * 170.00352 * 23 22 21 26 26 C 1.51511 * 86.60900 * 114.39918 * 25 23 22 27 27 O 1.21284 * 134.17594 * 179.97438 * 26 25 23 28 28 N 1.35832 * 91.64714 * 359.97438 * 26 25 23 29 29 C 1.38629 * 119.95524 * 359.76225 * 21 20 19 30 30 H 1.07998 * 120.00328 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99796 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.00328 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47459 * 5.00054 * 3 2 1 34 34 H 1.08998 * 109.47102 * 244.99915 * 3 2 1 35 35 H 1.09000 * 109.46873 * 150.00048 * 5 4 3 36 36 H 1.09000 * 109.46963 * 30.00212 * 5 4 3 37 37 H 0.97003 * 120.00161 * 179.97438 * 9 8 6 38 38 H 0.96999 * 120.00637 * 354.70711 * 16 14 4 39 39 H 1.08002 * 119.98057 * 359.97335 * 18 17 16 40 40 H 1.07998 * 119.93509 * 179.97438 * 19 18 17 41 41 H 1.08004 * 119.95292 * 179.97438 * 20 19 18 42 42 H 1.09003 * 113.68961 * 228.82463 * 25 23 22 43 43 H 1.09001 * 113.69337 * 359.96302 * 25 23 22 44 44 H 0.97007 * 132.37555 * 180.02562 * 28 26 25 45 45 H 1.08005 * 120.05382 * 180.25517 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3590 0.8257 0.9693 6 6 4.3926 -0.6439 1.3016 7 1 3.4877 -1.1500 1.6038 8 6 5.5788 -1.3419 1.2210 9 7 5.6082 -2.6242 1.5114 10 14 7.1442 -0.4663 0.6990 11 1 7.8320 0.0751 1.8985 12 1 8.0404 -1.4260 0.0054 13 1 6.8045 0.6481 -0.2220 14 6 2.5937 1.8222 2.3214 15 8 3.3657 1.8441 3.2604 16 7 1.3379 2.2883 2.4703 17 6 0.8873 2.6942 3.7315 18 6 -0.0199 3.7406 3.8423 19 6 -0.4651 4.1408 5.0871 20 6 -0.0094 3.5024 6.2251 21 6 0.8967 2.4566 6.1203 22 8 1.3436 1.8294 7.2401 23 6 0.8390 2.2991 8.4918 24 1 -0.2157 2.5708 8.4493 25 6 1.1965 1.3933 9.6814 26 6 2.0299 2.5495 10.1954 27 8 2.7255 2.7206 11.1742 28 7 1.6912 3.3191 9.1286 29 6 1.3416 2.0485 4.8724 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3585 2.1317 0.0896 34 1 2.6212 1.4027 -0.9314 35 1 5.0285 1.3652 1.6393 36 1 4.6809 0.9725 -0.0617 37 1 6.4428 -3.1154 1.4543 38 1 0.7464 2.3424 1.7034 39 1 -0.3772 4.2414 2.9547 40 1 -1.1700 4.9547 5.1713 41 1 -0.3590 3.8178 7.1971 42 1 0.3457 1.1498 10.3177 43 1 1.7847 0.5184 9.4044 44 1 1.9279 4.2248 8.8744 45 1 2.0437 1.2321 4.7888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625587841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:22 Heat of formation + Delta-G solvation = -26.177731 kcal Electronic energy + Delta-G solvation = -29667.628520 eV Core-core repulsion = 25459.124972 eV Total energy + Delta-G solvation = -4208.503548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.13751 -41.67960 -40.31895 -38.71419 -37.39921 -37.01749 -35.65650 -34.79849 -33.83976 -31.43038 -30.81264 -29.67372 -29.43293 -27.02938 -25.81780 -24.82163 -23.73449 -22.72621 -21.42069 -20.85470 -20.53048 -19.99307 -19.13612 -18.91724 -18.74184 -17.84326 -17.61730 -17.19686 -16.87230 -16.43865 -16.40270 -15.91761 -15.84891 -15.57224 -15.42183 -15.07018 -14.62202 -14.52575 -14.42398 -14.16951 -14.03394 -13.80501 -13.44291 -13.35910 -13.09219 -12.85574 -12.66070 -12.61242 -12.39331 -12.35691 -12.17629 -11.94256 -11.65912 -11.34983 -11.26650 -11.09217 -10.81451 -10.60910 -10.33158 -9.64304 -9.40397 -8.96915 -8.32142 -6.36076 0.30115 0.46836 1.22861 1.26210 1.33122 1.36834 1.44095 1.70146 2.04051 2.10028 2.18251 2.31189 2.84115 2.91961 2.99757 3.04716 3.47221 3.75584 3.95848 3.98408 4.09419 4.15864 4.27788 4.31616 4.46850 4.55490 4.62334 4.65591 4.68396 4.70983 4.80352 4.91723 5.07946 5.11645 5.28979 5.33281 5.37542 5.45040 5.50723 5.55552 5.71253 5.73949 5.84053 5.90467 6.02793 6.27684 6.39880 6.65442 6.95680 7.11426 7.24661 7.55233 8.84697 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.003049 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.553536 B = 9180.706207 C =11108.229043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.187 4.187 3 C 0.138 3.862 4 N -0.605 5.605 5 C 0.239 3.761 6 C -0.527 4.527 7 H 0.030 0.970 8 C 0.010 3.990 9 N -0.947 5.947 10 Si 0.944 3.056 11 H -0.281 1.281 12 H -0.277 1.277 13 H -0.233 1.233 14 C 0.696 3.304 15 O -0.617 6.617 16 N -0.672 5.672 17 C 0.195 3.805 18 C -0.175 4.175 19 C -0.048 4.048 20 C -0.220 4.220 21 C 0.132 3.868 22 O -0.329 6.329 23 C 0.285 3.715 24 H 0.164 0.836 25 C -0.152 4.152 26 C 0.527 3.473 27 O -0.549 6.549 28 N -0.747 5.747 29 C -0.190 4.190 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.019 0.981 36 H 0.057 0.943 37 H 0.267 0.733 38 H 0.421 0.579 39 H 0.159 0.841 40 H 0.174 0.826 41 H 0.161 0.839 42 H 0.171 0.829 43 H 0.122 0.878 44 H 0.406 0.594 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.340 16.536 4.293 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.207 4.207 3 C 0.016 3.984 4 N -0.339 5.339 5 C 0.116 3.884 6 C -0.566 4.566 7 H 0.048 0.952 8 C -0.188 4.188 9 N -0.587 5.587 10 Si 0.767 3.233 11 H -0.207 1.207 12 H -0.202 1.202 13 H -0.156 1.156 14 C 0.398 3.602 15 O -0.496 6.496 16 N -0.323 5.323 17 C 0.099 3.901 18 C -0.196 4.196 19 C -0.066 4.066 20 C -0.239 4.239 21 C 0.087 3.913 22 O -0.239 6.239 23 C 0.144 3.856 24 H 0.181 0.819 25 C -0.192 4.192 26 C 0.314 3.686 27 O -0.425 6.425 28 N -0.415 5.415 29 C -0.212 4.212 30 H 0.148 0.852 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.261 0.739 39 H 0.177 0.823 40 H 0.192 0.808 41 H 0.178 0.822 42 H 0.188 0.812 43 H 0.140 0.860 44 H 0.247 0.753 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.107 16.258 5.342 26.403 hybrid contribution 1.452 -0.366 -0.563 1.600 sum -18.654 15.892 4.779 24.968 Atomic orbital electron populations 1.24007 0.94442 1.03394 0.98811 1.23356 0.97001 0.98942 1.01403 1.20886 0.92223 0.95469 0.89807 1.47198 1.14437 1.62549 1.09673 1.19328 0.79411 0.92400 0.97261 1.21559 0.95364 0.94209 1.45477 0.95152 1.25817 1.02587 0.95427 0.94931 1.70051 1.28260 1.09693 1.50716 0.85772 0.78820 0.79421 0.79250 1.20726 1.20187 1.15611 1.16120 0.82322 0.78376 0.83368 1.90900 1.54850 1.63255 1.40583 1.42602 1.12489 1.67154 1.10062 1.17476 0.95619 0.93796 0.83234 1.21145 1.01405 0.96384 1.00670 1.21183 0.97294 0.98213 0.89909 1.21461 1.01669 0.98793 1.01955 1.18749 0.94286 0.93210 0.85031 1.86250 1.67542 1.56390 1.13699 1.23994 0.95205 0.85695 0.80685 0.81888 1.24105 1.02724 0.98377 0.93953 1.22459 0.78604 0.86695 0.80871 1.90758 1.41064 1.80621 1.30056 1.49568 1.51169 1.17033 1.23702 1.20307 1.05662 1.03903 0.91309 0.85169 0.88293 0.90482 0.87287 0.87980 0.96324 0.92495 0.92455 0.73877 0.82295 0.80849 0.82162 0.81166 0.85989 0.75259 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 14.32 67.78 0.97 -2.78 16 2 C -0.19 -5.73 9.85 25.65 0.25 -5.48 16 3 C 0.14 3.86 5.70 85.63 0.49 4.35 16 4 N -0.61 -24.29 2.44 -848.55 -2.07 -26.36 16 5 C 0.24 11.56 4.27 85.63 0.37 11.93 16 6 C -0.53 -31.08 9.83 25.60 0.25 -30.82 16 7 H 0.03 2.01 7.70 -2.91 -0.02 1.99 16 8 C 0.01 0.60 5.47 84.65 0.46 1.06 16 9 N -0.95 -60.70 13.96 21.44 0.30 -60.40 16 10 Si 0.94 44.95 27.47 68.60 1.88 46.83 16 11 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.23 -9.77 6.54 99.48 0.65 -9.12 16 14 C 0.70 29.08 8.01 179.05 1.43 30.51 16 15 O -0.62 -32.41 13.62 -3.98 -0.05 -32.46 16 16 N -0.67 -20.09 5.22 -317.23 -1.66 -21.74 16 17 C 0.19 5.57 6.27 38.13 0.24 5.81 16 18 C -0.18 -3.15 9.96 22.41 0.22 -2.92 16 19 C -0.05 -0.64 10.03 22.24 0.22 -0.42 16 20 C -0.22 -3.57 9.05 22.39 0.20 -3.37 16 21 C 0.13 3.49 6.68 22.49 0.15 3.64 16 22 O -0.33 -8.51 10.30 -92.38 -0.95 -9.46 16 23 C 0.28 4.20 4.38 86.35 0.38 4.58 16 24 H 0.16 0.98 6.46 -2.39 -0.02 0.96 16 25 C -0.15 -2.03 8.12 30.37 0.25 -1.79 16 26 C 0.53 11.50 9.85 87.64 0.86 12.36 16 27 O -0.55 -17.08 18.03 -3.04 -0.05 -17.13 16 28 N -0.75 -13.02 7.42 -569.68 -4.23 -17.25 16 29 C -0.19 -6.64 8.59 22.48 0.19 -6.45 16 30 H 0.13 1.83 7.84 -2.91 -0.02 1.81 16 31 H 0.10 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.08 3.14 7.59 -2.91 -0.02 3.12 16 33 H 0.11 2.00 5.94 -2.39 -0.01 1.99 16 34 H 0.10 2.59 7.89 -2.39 -0.02 2.57 16 35 H 0.02 0.98 6.85 -2.39 -0.02 0.97 16 36 H 0.06 2.48 6.95 -2.39 -0.02 2.46 16 37 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 38 H 0.42 8.88 6.51 -92.71 -0.60 8.28 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.16 1.37 6.02 -2.91 -0.02 1.35 16 42 H 0.17 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.41 6.33 8.96 -92.70 -0.83 5.50 16 45 H 0.09 4.25 6.42 -2.91 -0.02 4.23 16 Total: -1.00 -93.76 383.51 -0.32 -94.07 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.43 Total: 23.68 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 6.95 Total: 20.21 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -7.65 Total: -125.75 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -1.06 Total: -59.05 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -93.76 -0.32 -94.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625587841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.897 kcal (2) G-P(sol) polarization free energy of solvation -93.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds