Wall clock time and date at job start Wed Apr 1 2020 04:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47517 * 2 1 4 4 N 1.46498 * 109.47162 * 174.99083 * 3 2 1 5 5 C 1.34775 * 119.99668 * 84.20934 * 4 3 2 6 6 O 1.21283 * 120.00045 * 185.32662 * 5 4 3 7 7 C 1.50702 * 120.00470 * 5.32689 * 5 4 3 8 8 H 1.09006 * 109.34277 * 318.25815 * 7 5 4 9 9 C 1.54061 * 109.35681 * 77.90702 * 7 5 4 10 10 C 1.55609 * 104.29582 * 165.38339 * 9 7 5 11 11 S 1.83447 * 100.72203 * 322.08383 * 10 9 7 12 12 O 1.42108 * 111.24626 * 270.72480 * 11 10 9 13 13 O 1.42098 * 111.36175 * 131.51148 * 11 10 9 14 14 N 1.47059 * 109.35902 * 198.54680 * 7 5 4 15 15 C 1.46496 * 119.99859 * 264.20145 * 4 3 2 16 16 H 1.09006 * 110.88437 * 180.14913 * 15 4 3 17 17 C 1.55153 * 111.00336 * 56.27777 * 15 4 3 18 18 C 1.54327 * 102.93875 * 277.42295 * 17 15 4 19 19 N 1.47019 * 107.27431 * 337.80520 * 18 17 15 20 20 C 1.36928 * 125.65145 * 178.97518 * 19 18 17 21 21 H 1.08005 * 120.00202 * 179.97438 * 20 19 18 22 22 C 1.38817 * 120.00205 * 359.97438 * 20 19 18 23 23 N 1.31621 * 119.99431 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00233 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47115 * 89.99578 * 24 22 20 26 26 H 1.48498 * 109.47307 * 209.99591 * 24 22 20 27 27 H 1.48504 * 109.46917 * 330.00044 * 24 22 20 28 28 C 1.47528 * 108.71187 * 358.94536 * 19 18 17 29 29 H 1.09004 * 109.47055 * 300.00158 * 1 2 3 30 30 H 1.09004 * 109.47401 * 59.99885 * 1 2 3 31 31 H 1.08997 * 109.47387 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47282 * 240.00339 * 2 1 3 33 33 H 1.08996 * 109.47329 * 120.00393 * 2 1 3 34 34 H 1.09003 * 109.46968 * 294.99719 * 3 2 1 35 35 H 1.09003 * 109.46590 * 54.98716 * 3 2 1 36 36 H 1.09009 * 110.46937 * 284.08499 * 9 7 5 37 37 H 1.08998 * 110.47158 * 46.68165 * 9 7 5 38 38 H 1.08997 * 111.16615 * 204.21418 * 10 9 7 39 39 H 1.09002 * 111.19959 * 79.95842 * 10 9 7 40 40 H 0.97010 * 126.29626 * 30.82638 * 14 7 5 41 41 H 1.08997 * 110.72466 * 35.78387 * 17 15 4 42 42 H 1.08999 * 110.72254 * 159.06073 * 17 15 4 43 43 H 1.09004 * 109.88537 * 97.22378 * 18 17 15 44 44 H 1.09003 * 109.88059 * 218.23493 * 18 17 15 45 45 H 0.97005 * 119.99243 * 180.02562 * 23 22 20 46 46 H 1.08999 * 110.37194 * 265.30236 * 28 19 18 47 47 H 1.09005 * 110.41135 * 142.95133 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5001 1.4442 0.1206 5 6 4.2670 1.2934 -0.9773 6 8 5.4711 1.1978 -0.8675 7 6 3.6286 1.2437 -2.3415 8 1 2.7248 0.6360 -2.2953 9 6 3.2597 2.6722 -2.7851 10 6 2.9777 2.5403 -4.3098 11 16 4.2678 1.3285 -4.7919 12 8 5.4777 1.9807 -5.1531 13 8 3.7230 0.2777 -5.5781 14 7 4.5704 0.6443 -3.2989 15 6 4.1263 1.6099 1.4346 16 1 5.2131 1.5913 1.3522 17 6 3.6255 0.5297 2.4294 18 6 2.2875 1.1141 2.9293 19 7 2.3353 2.5666 2.7071 20 6 1.3320 3.4519 2.9980 21 1 1.4655 4.5046 2.7967 22 6 0.1433 2.9964 3.5518 23 7 -0.0195 1.7135 3.7966 24 14 -1.2251 4.2043 3.9493 25 1 -2.1175 4.3466 2.7709 26 1 -2.0089 3.7012 5.1059 27 1 -0.6366 5.5253 4.2870 28 6 3.6435 2.9127 2.1195 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.7518 1.9298 -0.9314 35 1 1.6052 1.9816 0.8417 36 1 2.3679 3.0158 -2.2609 37 1 4.0925 3.3530 -2.6091 38 1 3.1215 3.4925 -4.8204 39 1 1.9785 2.1451 -4.4930 40 1 5.2432 -0.0256 -3.0998 41 1 3.4649 -0.4199 1.9191 42 1 4.3270 0.4111 3.2552 43 1 1.4604 0.6801 2.3673 44 1 2.1647 0.9031 3.9916 45 1 -0.8503 1.3952 4.1832 46 1 4.3427 3.2125 2.9001 47 1 3.5310 3.7090 1.3836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664687066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:40 Heat of formation + Delta-G solvation = -59.257708 kcal Electronic energy + Delta-G solvation = -30860.552623 eV Core-core repulsion = 26786.058572 eV Total energy + Delta-G solvation = -4074.494052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.51178 -38.10905 -37.23672 -36.50667 -36.04477 -35.01947 -33.00859 -32.08964 -31.76694 -29.47895 -27.97126 -26.88598 -25.70823 -24.43003 -23.16324 -21.34577 -20.86424 -20.15895 -19.82763 -18.86647 -17.90943 -17.71739 -17.06483 -16.54495 -16.13301 -15.66472 -15.20396 -14.95948 -14.81066 -14.59921 -14.29060 -13.90480 -13.79575 -13.59453 -13.24379 -12.98834 -12.65187 -12.42352 -12.33585 -12.22367 -12.16506 -12.10560 -11.94967 -11.77489 -11.58070 -11.35212 -11.16449 -11.05819 -10.98117 -10.85521 -10.68956 -10.43555 -10.24961 -10.21572 -10.01583 -9.88299 -9.76053 -9.34332 -8.77775 -8.34583 -6.94035 -5.85396 -3.20032 -0.01573 2.26876 2.58953 3.13191 3.29315 3.34860 3.37003 3.37926 3.65555 4.00706 4.17000 4.37198 4.42480 4.57922 4.86036 5.00848 5.11501 5.17131 5.23686 5.31208 5.35180 5.39231 5.45004 5.51075 5.60095 5.64045 5.79518 5.82436 6.03684 6.09907 6.21501 6.27478 6.37724 6.41521 6.49572 6.62475 6.65152 6.73650 6.88911 7.00422 7.44234 7.49503 7.66224 7.71621 8.10141 8.24946 9.07592 9.66666 10.31872 11.24836 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.003443 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.390502 B = 8130.471576 C = 8536.623722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.075 3.925 4 N -0.579 5.579 5 C 0.514 3.486 6 O -0.536 6.536 7 C 0.092 3.908 8 H 0.109 0.891 9 C -0.121 4.121 10 C -0.594 4.594 11 S 2.578 3.422 12 O -0.956 6.956 13 O -0.958 6.958 14 N -1.082 6.082 15 C 0.122 3.878 16 H 0.100 0.900 17 C -0.158 4.158 18 C 0.167 3.833 19 N -0.601 5.601 20 C -0.234 4.234 21 H 0.077 0.923 22 C -0.001 4.001 23 N -0.916 5.916 24 Si 0.908 3.092 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.124 3.876 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.438 0.562 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.253 0.747 46 H 0.032 0.968 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 -1.249 -12.499 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.048 4.048 4 N -0.309 5.309 5 C 0.298 3.702 6 O -0.414 6.414 7 C -0.020 4.020 8 H 0.127 0.873 9 C -0.161 4.161 10 C -0.725 4.725 11 S 2.672 3.328 12 O -0.945 6.945 13 O -0.947 6.947 14 N -0.849 5.849 15 C 0.018 3.982 16 H 0.118 0.882 17 C -0.197 4.197 18 C 0.042 3.958 19 N -0.329 5.329 20 C -0.362 4.362 21 H 0.095 0.905 22 C -0.198 4.198 23 N -0.563 5.563 24 Si 0.738 3.262 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 C -0.003 4.003 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.163 0.837 36 H 0.142 0.858 37 H 0.121 0.879 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.280 0.720 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.049 0.951 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.553 -1.485 -13.243 13.791 hybrid contribution -0.988 0.548 0.998 1.508 sum 2.564 -0.937 -12.244 12.545 Atomic orbital electron populations 1.21690 0.94829 1.01414 1.02783 1.22043 0.96804 0.97092 1.01830 1.22452 0.78669 0.97976 1.05677 1.47837 1.07270 1.69598 1.06245 1.20216 0.87246 0.77179 0.85522 1.90684 1.14247 1.50061 1.86361 1.21721 0.93950 0.95580 0.90710 0.87339 1.22685 1.06088 0.95036 0.92272 1.30843 1.18230 1.18026 1.05376 1.06133 0.76758 0.76675 0.73222 1.93635 1.42488 1.76582 1.81842 1.93633 1.80331 1.53165 1.67574 1.54940 1.48335 1.56459 1.25202 1.22291 0.97470 0.97190 0.81214 0.88219 1.23303 1.00692 0.97782 0.97920 1.21395 0.91551 0.83217 0.99595 1.44623 1.11737 1.03548 1.72959 1.19020 0.92101 0.89264 1.35820 0.90483 1.24750 0.97969 0.96171 1.00915 1.69957 1.25756 1.11772 1.48812 0.86192 0.82103 0.80136 0.77736 1.21570 1.21712 1.20795 1.21936 0.89143 0.94096 0.95077 0.90434 0.93520 0.93207 0.93491 0.90559 0.92016 0.83749 0.85844 0.87891 0.83550 0.83567 0.72047 0.91656 0.91445 0.91927 0.94097 0.93664 0.95068 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.88 37.15 0.37 -1.67 16 2 C -0.14 -1.91 5.14 -26.73 -0.14 -2.05 16 3 C 0.07 1.07 4.04 -4.04 -0.02 1.06 16 4 N -0.58 -8.60 2.53 -163.67 -0.41 -9.01 16 5 C 0.51 7.39 6.86 -10.99 -0.08 7.32 16 6 O -0.54 -9.33 15.77 5.55 0.09 -9.24 16 7 C 0.09 1.00 2.58 -68.22 -0.18 0.82 16 8 H 0.11 1.00 5.80 -51.93 -0.30 0.70 16 9 C -0.12 -1.02 5.84 -24.79 -0.14 -1.17 16 10 C -0.59 -3.80 7.51 38.55 0.29 -3.51 16 11 S 2.58 26.41 6.49 -107.50 -0.70 25.72 16 12 O -0.96 -13.27 18.14 -57.43 -1.04 -14.31 16 13 O -0.96 -12.52 18.13 -57.43 -1.04 -13.57 16 14 N -1.08 -11.88 6.31 -5.09 -0.03 -11.91 16 15 C 0.12 2.02 3.66 -65.79 -0.24 1.78 16 16 H 0.10 1.66 7.02 -51.93 -0.36 1.29 16 17 C -0.16 -2.69 6.00 -24.90 -0.15 -2.84 16 18 C 0.17 3.48 4.17 -3.06 -0.01 3.47 16 19 N -0.60 -13.12 1.92 -169.99 -0.33 -13.44 16 20 C -0.23 -5.69 9.92 -15.06 -0.15 -5.84 16 21 H 0.08 1.85 7.83 -52.48 -0.41 1.44 16 22 C 0.00 -0.03 5.49 -17.43 -0.10 -0.12 16 23 N -0.92 -23.59 10.31 55.49 0.57 -23.02 16 24 Si 0.91 20.09 29.55 -169.99 -5.02 15.07 16 25 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 C 0.12 2.30 6.56 -2.47 -0.02 2.28 16 29 H 0.08 1.32 7.97 -51.93 -0.41 0.91 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.56 6.85 -51.93 -0.36 0.20 16 33 H 0.08 1.17 4.87 -51.93 -0.25 0.92 16 34 H 0.06 0.71 4.98 -51.93 -0.26 0.46 16 35 H 0.14 2.66 4.28 -51.93 -0.22 2.43 16 36 H 0.12 0.90 6.43 -51.92 -0.33 0.56 16 37 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.15 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.15 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.44 4.80 8.72 -40.34 -0.35 4.44 16 41 H 0.06 1.06 6.59 -51.93 -0.34 0.71 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.36 4.41 -51.93 -0.23 1.13 16 44 H 0.04 1.00 7.51 -51.93 -0.39 0.61 16 45 H 0.25 6.47 8.31 -40.82 -0.34 6.13 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -32.57 364.76 -9.72 -42.28 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.74 Total: 6.41 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.56 Total: -0.47 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.20 Total: -57.39 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -2.00 Total: -37.12 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 26.41 SS G_CDS: -0.70 Total: 25.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.57 -9.72 -42.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664687066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.974 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds