Wall clock time and date at job start Wed Apr 1 2020 04:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47517 * 2 1 4 4 N 1.46498 * 109.47162 * 174.99083 * 3 2 1 5 5 C 1.34775 * 119.99668 * 84.20934 * 4 3 2 6 6 O 1.21283 * 120.00045 * 185.32662 * 5 4 3 7 7 C 1.50702 * 120.00470 * 5.32689 * 5 4 3 8 8 H 1.09006 * 109.34277 * 318.25815 * 7 5 4 9 9 C 1.54061 * 109.35681 * 77.90702 * 7 5 4 10 10 C 1.55609 * 104.29582 * 165.38339 * 9 7 5 11 11 S 1.83447 * 100.72203 * 322.08383 * 10 9 7 12 12 O 1.42108 * 111.24626 * 270.72480 * 11 10 9 13 13 O 1.42098 * 111.36175 * 131.51148 * 11 10 9 14 14 N 1.47059 * 109.35902 * 198.54680 * 7 5 4 15 15 C 1.46496 * 119.99859 * 264.20145 * 4 3 2 16 16 H 1.09006 * 110.88437 * 180.14913 * 15 4 3 17 17 C 1.55153 * 111.00336 * 56.27777 * 15 4 3 18 18 C 1.54327 * 102.93875 * 277.42295 * 17 15 4 19 19 N 1.47019 * 107.27431 * 337.80520 * 18 17 15 20 20 C 1.36928 * 125.65145 * 178.97518 * 19 18 17 21 21 H 1.08005 * 120.00202 * 179.97438 * 20 19 18 22 22 C 1.38817 * 120.00205 * 359.97438 * 20 19 18 23 23 N 1.31621 * 119.99431 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00233 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47115 * 89.99578 * 24 22 20 26 26 H 1.48498 * 109.47307 * 209.99591 * 24 22 20 27 27 H 1.48504 * 109.46917 * 330.00044 * 24 22 20 28 28 C 1.47528 * 108.71187 * 358.94536 * 19 18 17 29 29 H 1.09004 * 109.47055 * 300.00158 * 1 2 3 30 30 H 1.09004 * 109.47401 * 59.99885 * 1 2 3 31 31 H 1.08997 * 109.47387 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47282 * 240.00339 * 2 1 3 33 33 H 1.08996 * 109.47329 * 120.00393 * 2 1 3 34 34 H 1.09003 * 109.46968 * 294.99719 * 3 2 1 35 35 H 1.09003 * 109.46590 * 54.98716 * 3 2 1 36 36 H 1.09009 * 110.46937 * 284.08499 * 9 7 5 37 37 H 1.08998 * 110.47158 * 46.68165 * 9 7 5 38 38 H 1.08997 * 111.16615 * 204.21418 * 10 9 7 39 39 H 1.09002 * 111.19959 * 79.95842 * 10 9 7 40 40 H 0.97010 * 126.29626 * 30.82638 * 14 7 5 41 41 H 1.08997 * 110.72466 * 35.78387 * 17 15 4 42 42 H 1.08999 * 110.72254 * 159.06073 * 17 15 4 43 43 H 1.09004 * 109.88537 * 97.22378 * 18 17 15 44 44 H 1.09003 * 109.88059 * 218.23493 * 18 17 15 45 45 H 0.97005 * 119.99243 * 180.02562 * 23 22 20 46 46 H 1.08999 * 110.37194 * 265.30236 * 28 19 18 47 47 H 1.09005 * 110.41135 * 142.95133 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5001 1.4442 0.1206 5 6 4.2670 1.2934 -0.9773 6 8 5.4711 1.1978 -0.8675 7 6 3.6286 1.2437 -2.3415 8 1 2.7248 0.6360 -2.2953 9 6 3.2597 2.6722 -2.7851 10 6 2.9777 2.5403 -4.3098 11 16 4.2678 1.3285 -4.7919 12 8 5.4777 1.9807 -5.1531 13 8 3.7230 0.2777 -5.5781 14 7 4.5704 0.6443 -3.2989 15 6 4.1263 1.6099 1.4346 16 1 5.2131 1.5913 1.3522 17 6 3.6255 0.5297 2.4294 18 6 2.2875 1.1141 2.9293 19 7 2.3353 2.5666 2.7071 20 6 1.3320 3.4519 2.9980 21 1 1.4655 4.5046 2.7967 22 6 0.1433 2.9964 3.5518 23 7 -0.0195 1.7135 3.7966 24 14 -1.2251 4.2043 3.9493 25 1 -2.1175 4.3466 2.7709 26 1 -2.0089 3.7012 5.1059 27 1 -0.6366 5.5253 4.2870 28 6 3.6435 2.9127 2.1195 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.7518 1.9298 -0.9314 35 1 1.6052 1.9816 0.8417 36 1 2.3679 3.0158 -2.2609 37 1 4.0925 3.3530 -2.6091 38 1 3.1215 3.4925 -4.8204 39 1 1.9785 2.1451 -4.4930 40 1 5.2432 -0.0256 -3.0998 41 1 3.4649 -0.4199 1.9191 42 1 4.3270 0.4111 3.2552 43 1 1.4604 0.6801 2.3673 44 1 2.1647 0.9031 3.9916 45 1 -0.8503 1.3952 4.1832 46 1 4.3427 3.2125 2.9001 47 1 3.5310 3.7090 1.3836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664687066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:39 Heat of formation + Delta-G solvation = -83.505220 kcal Electronic energy + Delta-G solvation = -30861.604074 eV Core-core repulsion = 26786.058572 eV Total energy + Delta-G solvation = -4075.545503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.68223 -39.42456 -38.12467 -37.47343 -36.93495 -36.36684 -34.48838 -33.32257 -32.68223 -31.12026 -29.33968 -27.90320 -27.01154 -26.03274 -23.98764 -22.45387 -22.08701 -21.80396 -20.65168 -20.01514 -18.92418 -18.85893 -18.55689 -17.51951 -17.19401 -16.63552 -16.57656 -16.26923 -15.97487 -15.78675 -15.56415 -15.18521 -14.87977 -14.41574 -14.33015 -14.10918 -13.87135 -13.75423 -13.50064 -13.46697 -13.25556 -13.08240 -13.03945 -12.85702 -12.81481 -12.69367 -12.52864 -12.51071 -12.38372 -12.05302 -11.97303 -11.83023 -11.72113 -11.58911 -11.45608 -11.31431 -10.91914 -10.60469 -10.39993 -9.63496 -8.72121 -7.74640 -5.09001 -0.75239 1.38963 1.52671 1.55772 1.56960 1.61775 2.02350 2.56207 2.62240 2.87834 3.32154 3.42240 3.45306 3.56870 3.71689 3.83774 3.92716 4.04690 4.13814 4.19375 4.27360 4.31713 4.37346 4.52202 4.59676 4.66875 4.69219 4.76667 4.82544 4.88343 4.93456 4.98720 5.02978 5.05957 5.16981 5.39212 5.46555 5.50971 5.58374 5.75491 5.76940 5.94337 6.02411 6.28464 6.51063 7.09999 7.20126 7.85160 8.49859 9.33804 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.003443 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.390502 B = 8130.471576 C = 8536.623722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.076 3.924 4 N -0.578 5.578 5 C 0.514 3.486 6 O -0.570 6.570 7 C 0.091 3.909 8 H 0.132 0.868 9 C -0.127 4.127 10 C -0.553 4.553 11 S 2.574 3.426 12 O -1.002 7.002 13 O -0.991 6.991 14 N -1.088 6.088 15 C 0.133 3.867 16 H 0.103 0.897 17 C -0.146 4.146 18 C 0.179 3.821 19 N -0.611 5.611 20 C -0.236 4.236 21 H 0.079 0.921 22 C -0.046 4.046 23 N -0.937 5.937 24 Si 0.962 3.038 25 H -0.282 1.282 26 H -0.304 1.304 27 H -0.278 1.278 28 C 0.125 3.875 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.099 0.901 38 H 0.177 0.823 39 H 0.181 0.819 40 H 0.435 0.565 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.053 0.947 44 H -0.003 1.003 45 H 0.245 0.755 46 H 0.031 0.969 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -0.241 -14.458 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.046 4.046 4 N -0.308 5.308 5 C 0.301 3.699 6 O -0.449 6.449 7 C -0.021 4.021 8 H 0.150 0.850 9 C -0.167 4.167 10 C -0.688 4.688 11 S 2.673 3.327 12 O -0.991 6.991 13 O -0.981 6.981 14 N -0.853 5.853 15 C 0.028 3.972 16 H 0.120 0.880 17 C -0.185 4.185 18 C 0.055 3.945 19 N -0.338 5.338 20 C -0.365 4.365 21 H 0.097 0.903 22 C -0.241 4.241 23 N -0.585 5.585 24 Si 0.793 3.207 25 H -0.209 1.209 26 H -0.231 1.231 27 H -0.204 1.204 28 C -0.001 4.001 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.163 0.837 37 H 0.118 0.882 38 H 0.195 0.805 39 H 0.199 0.801 40 H 0.276 0.724 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.015 0.985 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.642 -0.490 -15.234 15.470 hybrid contribution -0.685 0.275 1.655 1.813 sum 1.957 -0.214 -13.579 13.721 Atomic orbital electron populations 1.21605 0.94759 1.01742 1.01915 1.21986 0.96744 0.96667 1.01946 1.22396 0.77960 0.98283 1.05923 1.47825 1.07552 1.69697 1.05758 1.20808 0.86797 0.75858 0.86469 1.90676 1.15841 1.51414 1.86948 1.21965 0.94160 0.97727 0.88248 0.85032 1.22835 1.06959 0.93197 0.93668 1.30703 1.17240 1.17329 1.03516 1.06094 0.77082 0.76861 0.72662 1.93580 1.45762 1.77161 1.82595 1.93589 1.80669 1.55264 1.68582 1.54984 1.48458 1.56418 1.25484 1.22056 0.97572 0.95511 0.82033 0.87950 1.23166 0.98649 0.98253 0.98415 1.21135 0.93408 0.83219 0.96772 1.44732 1.12440 1.03646 1.72994 1.19265 0.92663 0.89747 1.34824 0.90331 1.25332 0.99795 0.97315 1.01608 1.70137 1.25585 1.13015 1.49777 0.85328 0.79875 0.78528 0.77018 1.20915 1.23071 1.20389 1.22006 0.87616 0.95341 0.95141 0.94548 0.90974 0.92358 0.90873 0.92863 0.88392 0.87409 0.83663 0.88240 0.80507 0.80149 0.72446 0.90568 0.90822 0.92854 0.98501 0.94588 0.95172 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.88 71.98 0.71 -2.92 16 2 C -0.14 -3.41 5.14 30.59 0.16 -3.25 16 3 C 0.08 2.02 4.04 86.38 0.35 2.37 16 4 N -0.58 -16.01 2.53 -790.13 -2.00 -18.01 16 5 C 0.51 13.62 6.86 87.66 0.60 14.22 16 6 O -0.57 -19.09 15.77 -3.04 -0.05 -19.14 16 7 C 0.09 1.65 2.58 44.50 0.11 1.77 16 8 H 0.13 1.80 5.80 -2.38 -0.01 1.79 16 9 C -0.13 -1.56 5.84 31.85 0.19 -1.38 16 10 C -0.55 -4.23 7.51 72.88 0.55 -3.68 16 11 S 2.57 47.59 6.49 -56.49 -0.37 47.22 16 12 O -1.00 -27.11 18.14 -127.76 -2.32 -29.42 16 13 O -0.99 -24.45 18.13 -127.76 -2.32 -26.77 16 14 N -1.09 -21.87 6.31 -170.00 -1.07 -22.94 16 15 C 0.13 4.27 3.66 46.38 0.17 4.44 16 16 H 0.10 3.29 7.02 -2.38 -0.02 3.28 16 17 C -0.15 -4.95 6.00 31.78 0.19 -4.76 16 18 C 0.18 7.67 4.17 86.73 0.36 8.03 16 19 N -0.61 -26.80 1.92 -691.72 -1.32 -28.13 16 20 C -0.24 -11.50 9.92 84.04 0.83 -10.67 16 21 H 0.08 3.72 7.83 -2.91 -0.02 3.70 16 22 C -0.05 -2.31 5.49 84.86 0.47 -1.85 16 23 N -0.94 -49.60 10.31 21.65 0.22 -49.37 16 24 Si 0.96 41.41 29.55 68.60 2.03 43.44 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 28 C 0.13 4.54 6.56 86.83 0.57 5.11 16 29 H 0.04 1.23 7.97 -2.39 -0.02 1.21 16 30 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.47 6.85 -2.39 -0.02 1.46 16 33 H 0.05 1.59 4.87 -2.39 -0.01 1.58 16 34 H 0.10 1.84 4.98 -2.39 -0.01 1.82 16 35 H 0.11 3.84 4.28 -2.39 -0.01 3.83 16 36 H 0.15 1.25 6.43 -2.38 -0.02 1.24 16 37 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 38 H 0.18 0.48 8.14 -2.39 -0.02 0.47 16 39 H 0.18 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.44 9.22 8.72 -93.00 -0.81 8.41 16 41 H 0.08 2.42 6.59 -2.39 -0.02 2.41 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.05 2.39 4.41 -2.39 -0.01 2.38 16 44 H 0.00 -0.17 7.51 -2.39 -0.02 -0.19 16 45 H 0.24 12.91 8.31 -92.70 -0.77 12.14 16 46 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -73.69 364.76 -1.73 -75.43 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.20 Total: 20.26 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.26 Total: 7.42 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -4.17 Total: -118.45 kcal Atomic # 8 Polarization: -70.65 SS G_CDS: -4.68 Total: -75.33 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 47.59 SS G_CDS: -0.37 Total: 47.22 kcal Total: -73.69 -1.73 -75.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664687066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.077 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds