Wall clock time and date at job start Wed Apr 1 2020 03:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47224 * 2 1 4 4 H 1.09005 * 109.47450 * 305.76851 * 3 2 1 5 5 C 1.50699 * 109.47444 * 185.76161 * 3 2 1 6 6 H 1.07999 * 120.00298 * 245.39009 * 5 3 2 7 7 C 1.37880 * 119.99545 * 65.39607 * 5 3 2 8 8 N 1.31515 * 119.99857 * 186.22124 * 7 5 3 9 9 Si 1.86799 * 120.00268 * 6.21500 * 7 5 3 10 10 H 1.48504 * 109.47102 * 270.00573 * 9 7 5 11 11 H 1.48500 * 109.46982 * 30.00737 * 9 7 5 12 12 H 1.48498 * 109.47348 * 150.00364 * 9 7 5 13 13 N 1.46508 * 109.46819 * 65.76501 * 3 2 1 14 14 C 1.34773 * 119.99813 * 275.00189 * 13 3 2 15 15 O 1.21587 * 120.00192 * 0.02562 * 14 13 3 16 16 N 1.34776 * 119.99772 * 180.02562 * 14 13 3 17 17 C 1.39953 * 120.00042 * 184.98755 * 16 14 13 18 18 C 1.38931 * 120.03205 * 323.78259 * 17 16 14 19 19 C 1.38142 * 120.05431 * 179.78954 * 18 17 16 20 20 C 1.38181 * 120.13553 * 0.46746 * 19 18 17 21 21 C 1.38858 * 120.07662 * 359.78730 * 20 19 18 22 22 N 1.40198 * 120.03050 * 180.02562 * 21 20 19 23 23 C 1.33881 * 122.76191 * 121.01396 * 22 21 20 24 24 O 1.21226 * 125.39485 * 359.97438 * 23 22 21 25 25 C 1.51317 * 109.20463 * 179.84226 * 23 22 21 26 26 C 1.54226 * 103.55630 * 0.38594 * 25 23 22 27 27 C 1.33880 * 122.76331 * 301.29908 * 22 21 20 28 28 O 1.21226 * 125.39394 * 0.03261 * 27 22 21 29 29 C 1.38716 * 119.93717 * 359.97438 * 21 20 19 30 30 H 1.09001 * 109.47448 * 59.99701 * 1 2 3 31 31 H 1.09001 * 109.46666 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47367 * 299.99492 * 1 2 3 33 33 H 1.09002 * 109.47211 * 240.00651 * 2 1 3 34 34 H 1.09001 * 109.47448 * 120.00299 * 2 1 3 35 35 H 0.97000 * 119.99617 * 354.96624 * 8 7 5 36 36 H 0.96992 * 120.00047 * 95.00425 * 13 3 2 37 37 H 0.96997 * 120.00368 * 4.97832 * 16 14 13 38 38 H 1.07996 * 119.97511 * 0.02562 * 18 17 16 39 39 H 1.08007 * 119.92812 * 180.20976 * 19 18 17 40 40 H 1.08005 * 119.96106 * 179.76550 * 20 19 18 41 41 H 1.09002 * 110.79636 * 241.77810 * 25 23 22 42 42 H 1.08992 * 110.55097 * 118.87720 * 25 23 22 43 43 H 1.09002 * 110.60388 * 241.26353 * 26 25 23 44 44 H 1.08994 * 110.73944 * 118.36326 * 26 25 23 45 45 H 1.08000 * 120.06829 * 179.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5948 1.9853 -0.8339 5 6 3.5402 1.4449 -0.1426 6 1 4.1589 1.8066 0.6653 7 6 4.1229 0.9855 -1.3047 8 7 5.4307 0.8724 -1.3844 9 14 3.0547 0.5235 -2.7659 10 1 2.6872 -0.9126 -2.6760 11 1 1.8219 1.3514 -2.7592 12 1 3.8059 0.7644 -4.0241 13 7 1.6682 2.0918 1.2596 14 6 0.4524 2.6581 1.3925 15 8 -0.3360 2.6297 0.4674 16 7 0.1106 3.2559 2.5511 17 6 -1.1864 3.7517 2.7267 18 6 -1.8615 4.3270 1.6574 19 6 -3.1434 4.8125 1.8292 20 6 -3.7541 4.7363 3.0663 21 6 -3.0824 4.1672 4.1402 22 7 -3.7031 4.0900 5.3948 23 6 -3.9126 2.9298 6.0293 24 8 -3.6021 1.8350 5.6116 25 6 -4.5955 3.2020 7.3519 26 6 -4.7549 4.7360 7.3675 27 6 -4.1402 5.1698 6.0546 28 8 -4.0572 6.3138 5.6621 29 6 -1.7970 3.6742 3.9700 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 5.9895 1.1803 -0.6538 36 1 2.2970 2.1142 1.9977 37 1 0.7634 3.3425 3.2633 38 1 -1.3854 4.3912 0.6902 39 1 -3.6677 5.2563 0.9957 40 1 -4.7550 5.1202 3.1984 41 1 -3.9731 2.8726 8.1839 42 1 -5.5698 2.7148 7.3869 43 1 -4.2117 5.1696 8.2072 44 1 -5.8080 5.0142 7.4086 45 1 -1.2724 3.2315 4.8038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675524837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:02 Heat of formation + Delta-G solvation = -54.494250 kcal Electronic energy + Delta-G solvation = -29914.433910 eV Core-core repulsion = 25704.702466 eV Total energy + Delta-G solvation = -4209.731444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.55742 -40.35008 -38.96964 -38.60252 -36.32240 -35.72417 -34.48340 -33.59665 -32.46012 -31.50255 -30.11553 -29.05390 -27.09518 -26.67422 -23.73595 -23.31644 -22.49231 -22.13645 -21.41133 -19.87226 -19.71590 -18.57478 -18.29145 -17.53835 -17.18632 -16.72045 -16.40376 -16.28225 -15.51964 -15.29554 -14.94609 -14.72402 -14.62961 -14.38474 -14.16560 -13.85235 -13.74624 -13.41716 -13.36208 -13.01522 -12.63051 -12.52034 -12.31454 -12.09557 -11.92202 -11.89695 -11.77305 -11.08582 -10.93675 -10.73928 -10.70628 -10.48171 -10.39329 -10.18227 -9.80697 -9.68763 -9.52526 -8.91545 -8.86071 -8.56434 -8.28591 -7.96824 -6.58424 -4.26464 1.06464 1.07699 1.23266 2.04544 2.27828 3.01235 3.35410 3.39039 3.44959 3.58594 3.63880 3.69484 3.83974 3.90410 4.28980 4.39258 4.66453 4.79158 4.84900 4.88928 4.95543 5.01496 5.06131 5.17569 5.19544 5.36755 5.50171 5.82856 6.01800 6.04333 6.08410 6.21771 6.27758 6.31473 6.44821 6.51728 6.65511 6.75864 6.86192 6.88124 6.96147 7.02481 7.12752 7.34846 7.40763 7.44355 7.70646 8.20630 8.54699 8.69439 9.05149 9.44235 10.82324 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.002357 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.029298 B =11875.999758 C =12122.188162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.258 3.742 4 H 0.051 0.949 5 C -0.610 4.610 6 H 0.062 0.938 7 C 0.036 3.964 8 N -0.904 5.904 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.710 5.710 14 C 0.695 3.305 15 O -0.576 6.576 16 N -0.695 5.695 17 C 0.192 3.808 18 C -0.107 4.107 19 C -0.089 4.089 20 C -0.124 4.124 21 C 0.120 3.880 22 N -0.526 5.526 23 C 0.521 3.479 24 O -0.464 6.464 25 C -0.154 4.154 26 C -0.154 4.154 27 C 0.524 3.476 28 O -0.469 6.469 29 C -0.136 4.136 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.268 0.732 36 H 0.390 0.610 37 H 0.404 0.596 38 H 0.150 0.850 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.083 7.630 19.436 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.154 3.846 4 H 0.068 0.932 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.170 4.170 8 N -0.537 5.537 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.361 5.361 14 C 0.396 3.604 15 O -0.454 6.454 16 N -0.343 5.343 17 C 0.095 3.905 18 C -0.128 4.128 19 C -0.109 4.109 20 C -0.144 4.144 21 C 0.031 3.969 22 N -0.266 5.266 23 C 0.310 3.690 24 O -0.333 6.333 25 C -0.194 4.194 26 C -0.194 4.194 27 C 0.313 3.687 28 O -0.339 6.339 29 C -0.159 4.159 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.223 0.777 37 H 0.239 0.761 38 H 0.168 0.832 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.402 6.909 16.545 27.920 hybrid contribution 0.726 0.550 2.429 2.594 sum -20.676 7.459 18.974 29.037 Atomic orbital electron populations 1.21873 0.97000 0.98946 1.02246 1.22272 0.94153 0.99917 1.01317 1.19202 0.95789 0.88318 0.81273 0.93162 1.22161 0.89648 1.48805 1.04181 0.92015 1.25705 0.97563 0.93608 1.00085 1.70838 1.04088 1.42576 1.36239 0.83953 0.75337 0.77254 0.75770 1.20669 1.19751 1.21389 1.45551 1.13141 1.58477 1.18942 1.16074 0.83641 0.78598 0.82123 1.90884 1.50967 1.64722 1.38803 1.42787 1.11361 1.61748 1.18433 1.17215 0.85211 0.94727 0.93329 1.21566 0.95262 0.95865 1.00087 1.20924 0.94727 0.98814 0.96397 1.20908 1.00013 1.01618 0.91888 1.17209 0.92129 1.03802 0.83787 1.44376 1.53537 1.10342 1.18318 1.20992 0.77905 0.83128 0.86981 1.90843 1.48214 1.23985 1.70285 1.22469 1.04384 0.96422 0.96104 1.22471 1.04971 0.95617 0.96312 1.20963 0.76887 0.84135 0.86713 1.90809 1.52757 1.18770 1.71585 1.20617 0.93518 1.03897 0.97820 0.92866 0.95060 0.93099 0.92184 0.92783 0.92143 0.77710 0.76103 0.83211 0.84863 0.85911 0.85839 0.85895 0.85888 0.85876 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.53 37.16 0.32 -2.64 16 2 C -0.14 -3.07 5.20 -26.73 -0.14 -3.21 16 3 C 0.26 6.08 1.81 -69.08 -0.12 5.95 16 4 H 0.05 1.30 6.05 -51.93 -0.31 0.99 16 5 C -0.61 -16.29 9.09 -34.44 -0.31 -16.60 16 6 H 0.06 1.72 7.95 -52.49 -0.42 1.30 16 7 C 0.04 1.02 5.42 -17.82 -0.10 0.92 16 8 N -0.90 -26.93 13.70 55.43 0.76 -26.17 16 9 Si 1.05 25.35 25.37 -169.99 -4.31 21.03 16 10 H -0.28 -6.44 6.76 56.52 0.38 -6.05 16 11 H -0.27 -6.35 6.36 56.52 0.36 -5.99 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.71 -14.04 5.03 -59.81 -0.30 -14.34 16 14 C 0.70 13.15 7.01 -86.92 -0.61 12.54 16 15 O -0.58 -12.45 10.97 5.29 0.06 -12.39 16 16 N -0.70 -10.39 5.34 -14.24 -0.08 -10.46 16 17 C 0.19 2.86 6.28 -83.71 -0.53 2.33 16 18 C -0.11 -1.61 8.69 -39.36 -0.34 -1.95 16 19 C -0.09 -1.13 10.03 -39.64 -0.40 -1.53 16 20 C -0.12 -1.53 9.39 -39.37 -0.37 -1.90 16 21 C 0.12 1.52 5.23 -83.62 -0.44 1.09 16 22 N -0.53 -5.27 2.65 -59.43 -0.16 -5.43 16 23 C 0.52 4.73 7.89 -11.08 -0.09 4.64 16 24 O -0.46 -6.18 17.35 5.60 0.10 -6.09 16 25 C -0.15 -0.49 7.03 -26.94 -0.19 -0.68 16 26 C -0.15 -0.45 7.03 -26.94 -0.19 -0.64 16 27 C 0.52 4.44 7.89 -11.08 -0.09 4.35 16 28 O -0.47 -5.64 17.34 5.60 0.10 -5.54 16 29 C -0.14 -1.82 9.32 -39.22 -0.37 -2.19 16 30 H 0.05 1.14 7.89 -51.93 -0.41 0.73 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.07 5.63 -51.93 -0.29 0.77 16 33 H 0.06 1.38 4.45 -51.93 -0.23 1.15 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.27 7.90 8.72 -40.82 -0.36 7.55 16 36 H 0.39 6.81 8.54 -40.82 -0.35 6.46 16 37 H 0.40 4.75 8.84 -40.82 -0.36 4.39 16 38 H 0.15 2.51 6.29 -52.49 -0.33 2.18 16 39 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 41 H 0.12 0.17 8.14 -51.93 -0.42 -0.26 16 42 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.12 0.13 8.14 -51.93 -0.42 -0.29 16 44 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -35.74 371.21 -7.92 -43.66 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -5.72 Total: 9.64 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -3.96 Total: 0.49 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.22 Total: -56.40 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.25 Total: -24.02 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.31 Total: 21.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.74 -7.92 -43.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675524837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.834 kcal (2) G-P(sol) polarization free energy of solvation -35.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds