Wall clock time and date at job start Wed Apr 1 2020 03:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47224 * 2 1 4 4 H 1.09005 * 109.47450 * 305.76851 * 3 2 1 5 5 C 1.50699 * 109.47444 * 185.76161 * 3 2 1 6 6 H 1.07999 * 120.00298 * 245.39009 * 5 3 2 7 7 C 1.37880 * 119.99545 * 65.39607 * 5 3 2 8 8 N 1.31515 * 119.99857 * 186.22124 * 7 5 3 9 9 Si 1.86799 * 120.00268 * 6.21500 * 7 5 3 10 10 H 1.48504 * 109.47102 * 270.00573 * 9 7 5 11 11 H 1.48500 * 109.46982 * 30.00737 * 9 7 5 12 12 H 1.48498 * 109.47348 * 150.00364 * 9 7 5 13 13 N 1.46508 * 109.46819 * 65.76501 * 3 2 1 14 14 C 1.34773 * 119.99813 * 275.00189 * 13 3 2 15 15 O 1.21587 * 120.00192 * 0.02562 * 14 13 3 16 16 N 1.34776 * 119.99772 * 180.02562 * 14 13 3 17 17 C 1.39953 * 120.00042 * 184.98755 * 16 14 13 18 18 C 1.38931 * 120.03205 * 323.78259 * 17 16 14 19 19 C 1.38142 * 120.05431 * 179.78954 * 18 17 16 20 20 C 1.38181 * 120.13553 * 0.46746 * 19 18 17 21 21 C 1.38858 * 120.07662 * 359.78730 * 20 19 18 22 22 N 1.40198 * 120.03050 * 180.02562 * 21 20 19 23 23 C 1.33881 * 122.76191 * 121.01396 * 22 21 20 24 24 O 1.21226 * 125.39485 * 359.97438 * 23 22 21 25 25 C 1.51317 * 109.20463 * 179.84226 * 23 22 21 26 26 C 1.54226 * 103.55630 * 0.38594 * 25 23 22 27 27 C 1.33880 * 122.76331 * 301.29908 * 22 21 20 28 28 O 1.21226 * 125.39394 * 0.03261 * 27 22 21 29 29 C 1.38716 * 119.93717 * 359.97438 * 21 20 19 30 30 H 1.09001 * 109.47448 * 59.99701 * 1 2 3 31 31 H 1.09001 * 109.46666 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47367 * 299.99492 * 1 2 3 33 33 H 1.09002 * 109.47211 * 240.00651 * 2 1 3 34 34 H 1.09001 * 109.47448 * 120.00299 * 2 1 3 35 35 H 0.97000 * 119.99617 * 354.96624 * 8 7 5 36 36 H 0.96992 * 120.00047 * 95.00425 * 13 3 2 37 37 H 0.96997 * 120.00368 * 4.97832 * 16 14 13 38 38 H 1.07996 * 119.97511 * 0.02562 * 18 17 16 39 39 H 1.08007 * 119.92812 * 180.20976 * 19 18 17 40 40 H 1.08005 * 119.96106 * 179.76550 * 20 19 18 41 41 H 1.09002 * 110.79636 * 241.77810 * 25 23 22 42 42 H 1.08992 * 110.55097 * 118.87720 * 25 23 22 43 43 H 1.09002 * 110.60388 * 241.26353 * 26 25 23 44 44 H 1.08994 * 110.73944 * 118.36326 * 26 25 23 45 45 H 1.08000 * 120.06829 * 179.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5948 1.9853 -0.8339 5 6 3.5402 1.4449 -0.1426 6 1 4.1589 1.8066 0.6653 7 6 4.1229 0.9855 -1.3047 8 7 5.4307 0.8724 -1.3844 9 14 3.0547 0.5235 -2.7659 10 1 2.6872 -0.9126 -2.6760 11 1 1.8219 1.3514 -2.7592 12 1 3.8059 0.7644 -4.0241 13 7 1.6682 2.0918 1.2596 14 6 0.4524 2.6581 1.3925 15 8 -0.3360 2.6297 0.4674 16 7 0.1106 3.2559 2.5511 17 6 -1.1864 3.7517 2.7267 18 6 -1.8615 4.3270 1.6574 19 6 -3.1434 4.8125 1.8292 20 6 -3.7541 4.7363 3.0663 21 6 -3.0824 4.1672 4.1402 22 7 -3.7031 4.0900 5.3948 23 6 -3.9126 2.9298 6.0293 24 8 -3.6021 1.8350 5.6116 25 6 -4.5955 3.2020 7.3519 26 6 -4.7549 4.7360 7.3675 27 6 -4.1402 5.1698 6.0546 28 8 -4.0572 6.3138 5.6621 29 6 -1.7970 3.6742 3.9700 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 5.9895 1.1803 -0.6538 36 1 2.2970 2.1142 1.9977 37 1 0.7634 3.3425 3.2633 38 1 -1.3854 4.3912 0.6902 39 1 -3.6677 5.2563 0.9957 40 1 -4.7550 5.1202 3.1984 41 1 -3.9731 2.8726 8.1839 42 1 -5.5698 2.7148 7.3869 43 1 -4.2117 5.1696 8.2072 44 1 -5.8080 5.0142 7.4086 45 1 -1.2724 3.2315 4.8038 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675524837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:01 Heat of formation + Delta-G solvation = -80.695714 kcal Electronic energy + Delta-G solvation = -29915.570090 eV Core-core repulsion = 25704.702466 eV Total energy + Delta-G solvation = -4210.867625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.25029 -41.72193 -39.80832 -39.72884 -37.49988 -36.96034 -35.82692 -34.58605 -34.21415 -33.14718 -31.14670 -30.16750 -28.93731 -27.15910 -24.81677 -24.43084 -24.00894 -23.11233 -22.63937 -21.55614 -20.85469 -20.17513 -19.27897 -18.97735 -18.08260 -17.55847 -17.47088 -17.39294 -16.88650 -16.57170 -16.08922 -15.83472 -15.54433 -15.34250 -15.14071 -14.97617 -14.81602 -14.59773 -14.50799 -14.39100 -14.33489 -13.84778 -13.74755 -13.66721 -13.13084 -12.83850 -12.75260 -12.51507 -12.33014 -12.09766 -11.86478 -11.73780 -11.65329 -11.53041 -11.31560 -11.13695 -11.02441 -10.92025 -10.69547 -9.95871 -9.86901 -9.22682 -8.80066 -6.48972 0.02663 0.15656 0.44007 1.32524 1.41335 1.50611 1.59326 1.68153 1.73606 2.05785 2.38926 2.61476 3.01563 3.20960 3.26292 3.29295 3.61372 3.74680 3.94241 3.97861 4.12640 4.19041 4.27029 4.32119 4.34849 4.37885 4.49507 4.77335 4.79989 4.84530 4.90969 4.95073 5.02680 5.05788 5.11587 5.16802 5.25776 5.27653 5.37918 5.51906 5.55639 5.60367 5.74313 5.85501 5.96221 6.05619 6.26540 6.49515 6.70465 7.04915 7.26396 7.53413 8.59416 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.023058 B = 0.002357 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.029298 B =11875.999758 C =12122.188162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.135 4.135 3 C 0.265 3.735 4 H 0.029 0.971 5 C -0.603 4.603 6 H 0.042 0.958 7 C -0.009 4.009 8 N -0.934 5.934 9 Si 1.078 2.922 10 H -0.258 1.258 11 H -0.263 1.263 12 H -0.287 1.287 13 N -0.712 5.712 14 C 0.697 3.303 15 O -0.603 6.603 16 N -0.680 5.680 17 C 0.173 3.827 18 C -0.128 4.128 19 C -0.085 4.085 20 C -0.125 4.125 21 C 0.112 3.888 22 N -0.534 5.534 23 C 0.514 3.486 24 O -0.516 6.516 25 C -0.136 4.136 26 C -0.135 4.135 27 C 0.518 3.482 28 O -0.512 6.512 29 C -0.138 4.138 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.258 0.742 36 H 0.401 0.599 37 H 0.419 0.581 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.140 0.860 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.161 7.589 22.035 33.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.160 3.840 4 H 0.047 0.953 5 C -0.642 4.642 6 H 0.060 0.940 7 C -0.209 4.209 8 N -0.570 5.570 9 Si 0.901 3.099 10 H -0.183 1.183 11 H -0.188 1.188 12 H -0.213 1.213 13 N -0.364 5.364 14 C 0.398 3.602 15 O -0.482 6.482 16 N -0.329 5.329 17 C 0.077 3.923 18 C -0.149 4.149 19 C -0.104 4.104 20 C -0.145 4.145 21 C 0.022 3.978 22 N -0.273 5.273 23 C 0.306 3.694 24 O -0.389 6.389 25 C -0.175 4.175 26 C -0.173 4.173 27 C 0.310 3.690 28 O -0.385 6.385 29 C -0.160 4.160 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.235 0.765 37 H 0.256 0.744 38 H 0.146 0.854 39 H 0.174 0.826 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.171 0.829 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.503 6.894 19.236 31.905 hybrid contribution 1.619 0.676 1.740 2.471 sum -22.885 7.570 20.976 31.953 Atomic orbital electron populations 1.21736 0.95478 1.00280 1.01396 1.22177 0.95397 0.98502 1.01280 1.18842 0.93456 0.89423 0.82275 0.95295 1.22341 0.91376 1.47212 1.03245 0.94020 1.26829 0.97779 0.93651 1.02605 1.70936 1.05022 1.44837 1.36205 0.83571 0.74415 0.78550 0.73326 1.18290 1.18837 1.21334 1.45248 1.14014 1.58893 1.18209 1.16063 0.82906 0.78449 0.82785 1.90867 1.51617 1.65636 1.40115 1.42484 1.12046 1.60827 1.17568 1.17367 0.85125 0.95742 0.94095 1.21497 0.96479 0.97611 0.99318 1.21169 0.93842 0.97935 0.97466 1.21167 1.00692 1.01056 0.91614 1.17504 0.92042 1.02636 0.85612 1.44783 1.53392 1.11724 1.17447 1.22123 0.76894 0.81878 0.88461 1.90819 1.50558 1.25711 1.71837 1.22627 1.05348 0.96746 0.92755 1.22629 1.06465 0.95026 0.93228 1.22037 0.75801 0.83052 0.88078 1.90791 1.54471 1.20314 1.72893 1.20691 0.94027 1.03927 0.97358 0.93924 0.92543 0.93744 0.92761 0.92242 0.93305 0.76466 0.74362 0.85373 0.82554 0.84186 0.83147 0.83136 0.83110 0.82869 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 8.53 71.98 0.61 -4.66 16 2 C -0.13 -5.90 5.20 30.59 0.16 -5.74 16 3 C 0.27 12.57 1.81 44.24 0.08 12.65 16 4 H 0.03 1.52 6.05 -2.38 -0.01 1.51 16 5 C -0.60 -32.80 9.09 25.60 0.23 -32.56 16 6 H 0.04 2.38 7.95 -2.91 -0.02 2.36 16 7 C -0.01 -0.50 5.42 84.66 0.46 -0.04 16 8 N -0.93 -56.85 13.70 21.45 0.29 -56.55 16 9 Si 1.08 51.07 25.37 68.60 1.74 52.81 16 10 H -0.26 -11.24 6.76 99.48 0.67 -10.56 16 11 H -0.26 -12.04 6.36 99.48 0.63 -11.40 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 N -0.71 -28.36 5.03 -461.40 -2.32 -30.68 16 14 C 0.70 26.70 7.01 179.06 1.25 27.95 16 15 O -0.60 -26.53 10.97 -3.99 -0.04 -26.57 16 16 N -0.68 -20.53 5.34 -317.23 -1.69 -22.22 16 17 C 0.17 5.21 6.28 38.13 0.24 5.45 16 18 C -0.13 -3.96 8.69 22.41 0.19 -3.76 16 19 C -0.09 -2.13 10.03 22.23 0.22 -1.91 16 20 C -0.13 -2.99 9.39 22.40 0.21 -2.78 16 21 C 0.11 2.78 5.23 38.07 0.20 2.98 16 22 N -0.53 -9.80 2.65 -579.77 -1.54 -11.34 16 23 C 0.51 8.23 7.89 87.99 0.69 8.92 16 24 O -0.52 -13.33 17.35 -2.86 -0.05 -13.38 16 25 C -0.14 -0.23 7.03 30.46 0.21 -0.02 16 26 C -0.13 -0.12 7.03 30.46 0.21 0.09 16 27 C 0.52 7.49 7.89 87.99 0.69 8.18 16 28 O -0.51 -11.56 17.34 -2.86 -0.05 -11.61 16 29 C -0.14 -3.68 9.32 22.50 0.21 -3.47 16 30 H 0.04 1.78 7.89 -2.39 -0.02 1.76 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.82 5.63 -2.39 -0.01 1.81 16 33 H 0.05 2.43 4.45 -2.39 -0.01 2.42 16 34 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.26 15.69 8.72 -92.71 -0.81 14.88 16 36 H 0.40 14.08 8.54 -92.71 -0.79 13.29 16 37 H 0.42 9.83 8.84 -92.71 -0.82 9.01 16 38 H 0.13 4.51 6.29 -2.91 -0.02 4.49 16 39 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 41 H 0.15 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.15 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H 0.15 -0.63 8.14 -2.39 -0.02 -0.65 16 45 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -81.69 371.21 1.54 -80.16 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: -0.69 Total: 28.10 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 5.89 Total: 11.29 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -5.26 Total: -120.80 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.14 Total: -51.57 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 1.74 Total: 52.81 kcal Total: -81.69 1.54 -80.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675524837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.540 kcal (2) G-P(sol) polarization free energy of solvation -81.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds