Wall clock time and date at job start Wed Apr 1 2020 03:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46448 * 2 1 4 4 H 1.08999 * 109.47340 * 55.00323 * 3 2 1 5 5 C 1.50703 * 109.46617 * 174.99849 * 3 2 1 6 6 H 1.08001 * 119.99675 * 120.00073 * 5 3 2 7 7 C 1.37874 * 120.00185 * 299.99976 * 5 3 2 8 8 N 1.31513 * 120.00078 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00077 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46851 * 59.99978 * 9 7 5 11 11 H 1.48497 * 109.46875 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47071 * 300.00136 * 9 7 5 13 13 N 1.46494 * 109.47355 * 294.99825 * 3 2 1 14 14 C 1.34778 * 120.00111 * 85.00360 * 13 3 2 15 15 O 1.21580 * 119.99681 * 359.97438 * 14 13 3 16 16 N 1.34780 * 119.99959 * 180.02562 * 14 13 3 17 17 C 1.39945 * 119.99882 * 174.77596 * 16 14 13 18 18 C 1.38925 * 120.03690 * 326.67611 * 17 16 14 19 19 C 1.38133 * 120.06217 * 179.72272 * 18 17 16 20 20 C 1.38193 * 120.13076 * 0.54744 * 19 18 17 21 21 C 1.38849 * 120.07643 * 359.72830 * 20 19 18 22 22 N 1.40194 * 120.03108 * 180.02562 * 21 20 19 23 23 C 1.33881 * 122.76264 * 111.98987 * 22 21 20 24 24 O 1.21228 * 125.39385 * 359.97344 * 23 22 21 25 25 C 1.51321 * 109.20685 * 179.84255 * 23 22 21 26 26 C 1.54227 * 103.55247 * 0.38179 * 25 23 22 27 27 C 1.33877 * 122.76370 * 292.27436 * 22 21 20 28 28 O 1.21232 * 125.39685 * 0.02562 * 27 22 21 29 29 C 1.38724 * 119.93794 * 359.97438 * 21 20 19 30 30 H 1.08997 * 109.46988 * 60.00138 * 1 2 3 31 31 H 1.09003 * 109.46368 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47346 * 299.99586 * 1 2 3 33 33 H 1.08994 * 109.47346 * 240.00414 * 2 1 3 34 34 H 1.08998 * 109.46996 * 119.99308 * 2 1 3 35 35 H 0.96999 * 120.00106 * 180.02562 * 8 7 5 36 36 H 0.97010 * 119.99979 * 265.00604 * 13 3 2 37 37 H 0.96996 * 119.99698 * 354.49180 * 16 14 13 38 38 H 1.08005 * 119.97141 * 359.97438 * 18 17 16 39 39 H 1.07996 * 119.93727 * 180.27526 * 19 18 17 40 40 H 1.08000 * 119.95991 * 179.69941 * 20 19 18 41 41 H 1.08995 * 110.79488 * 241.77516 * 25 23 22 42 42 H 1.08995 * 110.54949 * 118.87008 * 25 23 22 43 43 H 1.09001 * 110.60672 * 241.26073 * 26 25 23 44 44 H 1.08999 * 110.74157 * 118.36171 * 26 25 23 45 45 H 1.07997 * 120.06726 * 179.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8815 1.3818 10 1 6.4993 2.2818 1.3822 11 1 6.3977 0.2181 2.6510 12 1 6.5975 0.1476 0.2350 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4321 16 7 0.0783 3.2665 -2.5188 17 6 -1.2222 3.7585 -2.6776 18 6 -2.2909 3.1055 -2.0764 19 6 -3.5741 3.5940 -2.2281 20 6 -3.8001 4.7264 -2.9871 21 6 -2.7368 5.3802 -3.5952 22 7 -2.9670 6.5293 -4.3646 23 6 -2.5519 7.7462 -3.9916 24 8 -1.9442 7.9993 -2.9736 25 6 -2.9584 8.7550 -5.0436 26 6 -3.6968 7.9026 -6.0956 27 6 -3.6251 6.5009 -5.5302 28 8 -4.0901 5.5094 -6.0500 29 6 -1.4461 4.8958 -3.4398 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.8293 -0.0610 2.9498 36 1 2.2719 2.1232 -1.9978 37 1 0.7241 3.3625 -3.2361 38 1 -2.1179 2.2175 -1.4865 39 1 -4.4029 3.0873 -1.7561 40 1 -4.8051 5.1031 -3.1079 41 1 -2.0816 9.2311 -5.4824 42 1 -3.6271 9.5032 -4.6180 43 1 -3.1874 7.9547 -7.0578 44 1 -4.7337 8.2239 -6.1940 45 1 -0.6176 5.4024 -3.9122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675524838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:06 Heat of formation + Delta-G solvation = -54.763517 kcal Electronic energy + Delta-G solvation = -29760.173702 eV Core-core repulsion = 25550.430582 eV Total energy + Delta-G solvation = -4209.743120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.47851 -40.23321 -38.89738 -38.47808 -36.24226 -35.51392 -34.35856 -33.52199 -32.39808 -31.01591 -30.03584 -28.93237 -26.86374 -26.61724 -23.73369 -23.29244 -22.85887 -22.25123 -21.21844 -19.73021 -19.50521 -18.29832 -18.21649 -17.40578 -16.69509 -16.61911 -16.25814 -15.88529 -15.35845 -15.22362 -14.81716 -14.64942 -14.57060 -14.32543 -14.21853 -13.88461 -13.72246 -13.50745 -13.31600 -12.82380 -12.67985 -12.21794 -11.99821 -11.87409 -11.76489 -11.56190 -11.26991 -11.03172 -10.99733 -10.85138 -10.60276 -10.37080 -10.31761 -10.22357 -10.04195 -9.64027 -9.40429 -9.07715 -8.84885 -8.52341 -8.11270 -7.76559 -6.14196 -4.23724 1.13450 1.14136 1.31228 2.11286 2.31723 3.12680 3.24510 3.30158 3.32059 3.46045 3.72888 3.75319 3.93146 4.00452 4.30616 4.33507 4.76960 4.90375 4.93121 4.93850 5.01284 5.06116 5.10801 5.17538 5.25884 5.43541 5.58874 5.89298 6.12132 6.31237 6.37870 6.38728 6.45276 6.48824 6.57130 6.65033 6.94710 6.97657 7.04364 7.11457 7.31533 7.34863 7.41645 7.47731 7.62181 7.83949 7.94941 8.16399 8.69772 8.80770 9.20057 9.44246 10.91154 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019977 B = 0.002299 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.245980 B =12177.850645 C =12986.329831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.717 5.717 14 C 0.693 3.307 15 O -0.573 6.573 16 N -0.696 5.696 17 C 0.198 3.802 18 C -0.108 4.108 19 C -0.088 4.088 20 C -0.126 4.126 21 C 0.121 3.879 22 N -0.527 5.527 23 C 0.521 3.479 24 O -0.464 6.464 25 C -0.154 4.154 26 C -0.154 4.154 27 C 0.524 3.476 28 O -0.470 6.470 29 C -0.139 4.139 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.100 0.900 35 H 0.266 0.734 36 H 0.386 0.614 37 H 0.403 0.597 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 14.175 -17.785 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.368 5.368 14 C 0.393 3.607 15 O -0.450 6.450 16 N -0.344 5.344 17 C 0.100 3.900 18 C -0.129 4.129 19 C -0.107 4.107 20 C -0.147 4.147 21 C 0.032 3.968 22 N -0.268 5.268 23 C 0.310 3.690 24 O -0.333 6.333 25 C -0.194 4.194 26 C -0.194 4.194 27 C 0.313 3.687 28 O -0.340 6.340 29 C -0.161 4.161 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.218 0.782 37 H 0.238 0.762 38 H 0.165 0.835 39 H 0.151 0.849 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.492 13.550 -16.368 25.720 hybrid contribution 1.705 0.068 -0.585 1.804 sum -12.786 13.618 -16.953 25.226 Atomic orbital electron populations 1.21829 0.98336 0.97978 1.01193 1.21958 0.92690 0.99802 1.02293 1.18741 0.94053 0.88901 0.79874 0.93145 1.21175 0.90616 1.39246 1.06378 0.92159 1.24871 0.98632 0.94766 0.95341 1.69879 1.35249 1.37413 1.09315 0.86502 0.84782 0.78311 0.77463 1.20200 1.21099 1.20172 1.45853 1.13350 1.58151 1.19405 1.16091 0.83861 0.78798 0.81908 1.90910 1.51997 1.64193 1.37890 1.42902 1.11305 1.62097 1.18100 1.17223 0.84424 0.91749 0.96564 1.21453 0.90823 1.00918 0.99671 1.20899 0.96953 0.95392 0.97472 1.20920 0.97790 0.97317 0.98623 1.17166 0.93702 0.88568 0.97337 1.44357 1.51932 1.08726 1.21737 1.20991 0.77677 0.83193 0.87133 1.90846 1.35876 1.81312 1.25261 1.22468 1.03910 0.98128 0.94868 1.22469 1.05055 0.90987 1.00861 1.20960 0.76004 0.92112 0.79584 1.90807 1.43738 1.37858 1.61626 1.20626 0.95972 0.95520 1.04029 0.94394 0.95893 0.93059 0.95051 0.88196 0.92444 0.78186 0.76244 0.83519 0.84892 0.86011 0.85878 0.85937 0.85935 0.85928 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.29 7.09 2.24 -69.08 -0.15 6.93 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.95 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.48 11.29 55.43 0.63 -23.85 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.72 -14.53 5.03 -59.81 -0.30 -14.84 16 14 C 0.69 13.69 6.87 -86.91 -0.60 13.09 16 15 O -0.57 -13.16 11.15 5.29 0.06 -13.11 16 16 N -0.70 -10.81 5.35 -14.24 -0.08 -10.88 16 17 C 0.20 3.07 6.28 -83.72 -0.53 2.55 16 18 C -0.11 -1.70 8.65 -39.37 -0.34 -2.04 16 19 C -0.09 -1.16 10.03 -39.64 -0.40 -1.56 16 20 C -0.13 -1.62 9.81 -39.37 -0.39 -2.01 16 21 C 0.12 1.61 4.92 -83.63 -0.41 1.19 16 22 N -0.53 -5.53 2.61 -59.43 -0.16 -5.69 16 23 C 0.52 5.00 7.96 -11.08 -0.09 4.91 16 24 O -0.46 -6.50 17.61 5.60 0.10 -6.40 16 25 C -0.15 -0.55 7.03 -26.94 -0.19 -0.74 16 26 C -0.15 -0.50 7.03 -26.94 -0.19 -0.69 16 27 C 0.52 4.66 7.96 -11.09 -0.09 4.57 16 28 O -0.47 -5.88 17.61 5.60 0.10 -5.78 16 29 C -0.14 -1.94 9.74 -39.22 -0.38 -2.32 16 30 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.39 6.72 8.56 -40.82 -0.35 6.37 16 37 H 0.40 4.88 8.83 -40.82 -0.36 4.52 16 38 H 0.15 2.57 6.41 -52.48 -0.34 2.23 16 39 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.12 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.12 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 377.89 15.07 5.69 5.69 Total: -1.00 -34.86 377.89 -8.75 -43.61 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.80 Total: 10.35 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -3.97 Total: 5.44 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.09 Total: -55.26 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: 0.26 Total: -25.28 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.86 -8.75 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675524838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.156 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds