Wall clock time and date at job start Wed Apr 1 2020 03:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46448 * 2 1 4 4 H 1.08999 * 109.47340 * 55.00323 * 3 2 1 5 5 C 1.50703 * 109.46617 * 174.99849 * 3 2 1 6 6 H 1.08001 * 119.99675 * 120.00073 * 5 3 2 7 7 C 1.37874 * 120.00185 * 299.99976 * 5 3 2 8 8 N 1.31513 * 120.00078 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00077 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46851 * 59.99978 * 9 7 5 11 11 H 1.48497 * 109.46875 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47071 * 300.00136 * 9 7 5 13 13 N 1.46494 * 109.47355 * 294.99825 * 3 2 1 14 14 C 1.34778 * 120.00111 * 85.00360 * 13 3 2 15 15 O 1.21580 * 119.99681 * 359.97438 * 14 13 3 16 16 N 1.34780 * 119.99959 * 180.02562 * 14 13 3 17 17 C 1.39945 * 119.99882 * 174.77596 * 16 14 13 18 18 C 1.38925 * 120.03690 * 326.67611 * 17 16 14 19 19 C 1.38133 * 120.06217 * 179.72272 * 18 17 16 20 20 C 1.38193 * 120.13076 * 0.54744 * 19 18 17 21 21 C 1.38849 * 120.07643 * 359.72830 * 20 19 18 22 22 N 1.40194 * 120.03108 * 180.02562 * 21 20 19 23 23 C 1.33881 * 122.76264 * 111.98987 * 22 21 20 24 24 O 1.21228 * 125.39385 * 359.97344 * 23 22 21 25 25 C 1.51321 * 109.20685 * 179.84255 * 23 22 21 26 26 C 1.54227 * 103.55247 * 0.38179 * 25 23 22 27 27 C 1.33877 * 122.76370 * 292.27436 * 22 21 20 28 28 O 1.21232 * 125.39685 * 0.02562 * 27 22 21 29 29 C 1.38724 * 119.93794 * 359.97438 * 21 20 19 30 30 H 1.08997 * 109.46988 * 60.00138 * 1 2 3 31 31 H 1.09003 * 109.46368 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47346 * 299.99586 * 1 2 3 33 33 H 1.08994 * 109.47346 * 240.00414 * 2 1 3 34 34 H 1.08998 * 109.46996 * 119.99308 * 2 1 3 35 35 H 0.96999 * 120.00106 * 180.02562 * 8 7 5 36 36 H 0.97010 * 119.99979 * 265.00604 * 13 3 2 37 37 H 0.96996 * 119.99698 * 354.49180 * 16 14 13 38 38 H 1.08005 * 119.97141 * 359.97438 * 18 17 16 39 39 H 1.07996 * 119.93727 * 180.27526 * 19 18 17 40 40 H 1.08000 * 119.95991 * 179.69941 * 20 19 18 41 41 H 1.08995 * 110.79488 * 241.77516 * 25 23 22 42 42 H 1.08995 * 110.54949 * 118.87008 * 25 23 22 43 43 H 1.09001 * 110.60672 * 241.26073 * 26 25 23 44 44 H 1.08999 * 110.74157 * 118.36171 * 26 25 23 45 45 H 1.07997 * 120.06726 * 179.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8815 1.3818 10 1 6.4993 2.2818 1.3822 11 1 6.3977 0.2181 2.6510 12 1 6.5975 0.1476 0.2350 13 7 1.6524 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3416 2.6318 -0.4321 16 7 0.0783 3.2665 -2.5188 17 6 -1.2222 3.7585 -2.6776 18 6 -2.2909 3.1055 -2.0764 19 6 -3.5741 3.5940 -2.2281 20 6 -3.8001 4.7264 -2.9871 21 6 -2.7368 5.3802 -3.5952 22 7 -2.9670 6.5293 -4.3646 23 6 -2.5519 7.7462 -3.9916 24 8 -1.9442 7.9993 -2.9736 25 6 -2.9584 8.7550 -5.0436 26 6 -3.6968 7.9026 -6.0956 27 6 -3.6251 6.5009 -5.5302 28 8 -4.0901 5.5094 -6.0500 29 6 -1.4461 4.8958 -3.4398 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 3.8293 -0.0610 2.9498 36 1 2.2719 2.1232 -1.9978 37 1 0.7241 3.3625 -3.2361 38 1 -2.1179 2.2175 -1.4865 39 1 -4.4029 3.0873 -1.7561 40 1 -4.8051 5.1031 -3.1079 41 1 -2.0816 9.2311 -5.4824 42 1 -3.6271 9.5032 -4.6180 43 1 -3.1874 7.9547 -7.0578 44 1 -4.7337 8.2239 -6.1940 45 1 -0.6176 5.4024 -3.9122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675524838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:05 Heat of formation + Delta-G solvation = -79.255748 kcal Electronic energy + Delta-G solvation = -29761.235765 eV Core-core repulsion = 25550.430582 eV Total energy + Delta-G solvation = -4210.805183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.21367 -41.65979 -39.74702 -39.70222 -37.35826 -36.91127 -35.78292 -34.48012 -34.09851 -32.78510 -31.12938 -30.10080 -28.75540 -27.13885 -25.24372 -24.56098 -23.96216 -23.12953 -22.57563 -21.43508 -20.73253 -19.81854 -19.20029 -18.30989 -17.94729 -17.49357 -17.41170 -17.35957 -16.77741 -16.61830 -16.14647 -15.81619 -15.67451 -15.33107 -15.22414 -14.95462 -14.80013 -14.55670 -14.47437 -14.14922 -13.85562 -13.69691 -13.51317 -13.18332 -13.07102 -12.92646 -12.79489 -12.66370 -12.21275 -12.08333 -12.07771 -11.83614 -11.62055 -11.53386 -11.27263 -11.13146 -11.07777 -10.99436 -10.53843 -9.93883 -9.76272 -9.14712 -8.16806 -6.34020 0.04157 0.18000 0.46034 1.35452 1.44607 1.46325 1.53870 1.61779 1.79054 2.11843 2.41444 2.65140 3.12665 3.23430 3.32211 3.38770 3.63165 3.76148 3.95451 3.98760 4.14001 4.20408 4.33645 4.42183 4.50162 4.57782 4.74874 4.78759 4.84403 4.92516 4.96230 5.05373 5.07001 5.13966 5.27442 5.29108 5.39644 5.44749 5.53117 5.59473 5.72655 5.74316 5.83263 5.88407 6.15619 6.21896 6.29148 6.72855 6.73216 7.18457 7.33844 7.65311 8.88494 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019977 B = 0.002299 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.245980 B =12177.850645 C =12986.329831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.296 3.704 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.713 5.713 14 C 0.694 3.306 15 O -0.608 6.608 16 N -0.679 5.679 17 C 0.177 3.823 18 C -0.131 4.131 19 C -0.085 4.085 20 C -0.127 4.127 21 C 0.112 3.888 22 N -0.535 5.535 23 C 0.514 3.486 24 O -0.519 6.519 25 C -0.135 4.135 26 C -0.134 4.134 27 C 0.518 3.482 28 O -0.514 6.514 29 C -0.141 4.141 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.026 0.974 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.420 0.580 38 H 0.124 0.876 39 H 0.156 0.844 40 H 0.142 0.858 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 16.430 -20.759 30.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.365 5.365 14 C 0.395 3.605 15 O -0.488 6.488 16 N -0.328 5.328 17 C 0.080 3.920 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.147 4.147 21 C 0.023 3.977 22 N -0.275 5.275 23 C 0.307 3.693 24 O -0.392 6.392 25 C -0.174 4.174 26 C -0.173 4.173 27 C 0.311 3.689 28 O -0.386 6.386 29 C -0.163 4.163 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.237 0.763 37 H 0.257 0.743 38 H 0.142 0.858 39 H 0.174 0.826 40 H 0.160 0.840 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.171 0.829 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.848 15.847 -19.437 29.144 hybrid contribution 1.687 -0.568 0.299 1.805 sum -13.161 15.279 -19.138 27.801 Atomic orbital electron populations 1.21653 0.96951 0.99008 1.00220 1.21803 0.93813 0.99079 1.01329 1.18300 0.93503 0.88894 0.80044 0.98250 1.21527 0.91298 1.39131 1.06814 0.91041 1.25750 1.03287 0.94356 0.94988 1.70036 1.37131 1.38182 1.09821 0.85426 0.79101 0.78371 0.77592 1.19818 1.21175 1.18866 1.45464 1.14085 1.58336 1.18651 1.16132 0.83194 0.78692 0.82519 1.90891 1.52900 1.65396 1.39579 1.42542 1.11960 1.61138 1.17195 1.17388 0.84008 0.92782 0.97788 1.21398 0.92240 1.00944 1.00563 1.21154 0.96653 0.95495 0.97113 1.21210 0.98784 0.96889 0.97866 1.17475 0.93488 0.89606 0.97145 1.44766 1.52338 1.08230 1.22173 1.22148 0.76077 0.83707 0.87388 1.90823 1.38460 1.81999 1.27920 1.22627 1.05453 0.96735 0.92601 1.22627 1.07253 0.86100 1.01295 1.22043 0.74294 0.93995 0.78553 1.90790 1.45442 1.39961 1.62432 1.20741 0.96953 0.94962 1.03662 0.93928 0.93697 0.95453 0.94072 0.90839 0.92540 0.76331 0.74254 0.85818 0.82599 0.83993 0.83143 0.83132 0.83061 0.82870 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.51 71.98 0.61 -4.87 16 2 C -0.12 -5.98 5.45 30.60 0.17 -5.81 16 3 C 0.30 15.21 2.24 44.25 0.10 15.31 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 5 C -0.55 -28.99 8.73 25.60 0.22 -28.76 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -52.26 11.29 21.45 0.24 -52.02 16 9 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 13 N -0.71 -29.57 5.03 -461.42 -2.32 -31.89 16 14 C 0.69 28.36 6.87 179.05 1.23 29.59 16 15 O -0.61 -29.46 11.15 -3.97 -0.04 -29.51 16 16 N -0.68 -21.52 5.35 -317.23 -1.70 -23.22 16 17 C 0.18 5.65 6.28 38.13 0.24 5.89 16 18 C -0.13 -4.30 8.65 22.41 0.19 -4.10 16 19 C -0.09 -2.28 10.03 22.23 0.22 -2.06 16 20 C -0.13 -3.22 9.81 22.41 0.22 -3.00 16 21 C 0.11 2.95 4.92 38.07 0.19 3.13 16 22 N -0.53 -10.40 2.61 -579.76 -1.51 -11.91 16 23 C 0.51 8.86 7.96 87.99 0.70 9.56 16 24 O -0.52 -14.31 17.61 -2.87 -0.05 -14.36 16 25 C -0.14 -0.34 7.03 30.46 0.21 -0.13 16 26 C -0.13 -0.21 7.03 30.46 0.21 0.00 16 27 C 0.52 7.95 7.96 87.99 0.70 8.65 16 28 O -0.51 -12.12 17.61 -2.88 -0.05 -12.17 16 29 C -0.14 -3.95 9.74 22.50 0.22 -3.73 16 30 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 4.05 5.95 -2.39 -0.01 4.04 16 35 H 0.27 14.44 8.31 -92.71 -0.77 13.66 16 36 H 0.40 13.93 8.56 -92.70 -0.79 13.14 16 37 H 0.42 10.09 8.83 -92.71 -0.82 9.27 16 38 H 0.12 4.63 6.41 -2.91 -0.02 4.61 16 39 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 41 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.15 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.15 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.15 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -81.77 377.89 1.93 -79.83 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.55 Total: 30.12 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 5.89 Total: 21.01 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -5.29 Total: -119.03 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -0.15 Total: -56.04 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -81.77 1.93 -79.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675524838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.578 kcal (2) G-P(sol) polarization free energy of solvation -81.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds