Wall clock time and date at job start Wed Apr 1 2020 03:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47247 * 2 1 4 4 H 1.08999 * 109.46842 * 302.82918 * 3 2 1 5 5 C 1.50696 * 109.47094 * 182.83328 * 3 2 1 6 6 N 1.34769 * 120.00641 * 87.90113 * 5 3 2 7 7 O 1.21289 * 119.99706 * 267.90123 * 5 3 2 8 8 N 1.46895 * 109.47000 * 62.82976 * 3 2 1 9 9 C 1.47019 * 110.99953 * 173.05818 * 8 3 2 10 10 C 1.53093 * 109.25671 * 177.60807 * 9 8 3 11 11 O 1.43010 * 109.26379 * 56.84426 * 10 9 8 12 12 C 1.43008 * 113.73910 * 301.33330 * 11 10 9 13 13 H 1.09003 * 109.50785 * 298.68473 * 12 11 10 14 14 C 1.53001 * 109.50812 * 178.60000 * 12 11 10 15 15 N 1.46502 * 109.47098 * 64.99915 * 14 12 11 16 16 C 1.34777 * 120.00219 * 180.02562 * 15 14 12 17 17 O 1.21285 * 119.99733 * 359.97438 * 16 15 14 18 18 C 1.50691 * 120.00087 * 179.97438 * 16 15 14 19 19 S 1.81001 * 109.47211 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00286 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99752 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00189 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99841 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99919 * 179.72602 * 22 20 19 25 25 H 1.48500 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47217 * 119.99705 * 24 22 20 27 27 H 1.48503 * 109.47185 * 239.99615 * 24 22 20 28 28 C 1.47009 * 111.00255 * 49.41904 * 8 3 2 29 29 H 1.09009 * 109.46840 * 296.57342 * 1 2 3 30 30 H 1.08992 * 109.47500 * 56.56924 * 1 2 3 31 31 H 1.08999 * 109.47194 * 176.58089 * 1 2 3 32 32 H 1.09006 * 109.46881 * 240.00109 * 2 1 3 33 33 H 1.09001 * 109.47846 * 120.00294 * 2 1 3 34 34 H 0.97001 * 119.99978 * 359.97438 * 6 5 3 35 35 H 0.97001 * 120.00564 * 180.02562 * 6 5 3 36 36 H 1.09005 * 109.50280 * 57.67036 * 9 8 3 37 37 H 1.08994 * 109.53755 * 297.56199 * 9 8 3 38 38 H 1.09007 * 109.50597 * 296.90893 * 10 9 8 39 39 H 1.09002 * 109.54298 * 176.80873 * 10 9 8 40 40 H 1.09001 * 109.47008 * 304.99949 * 14 12 11 41 41 H 1.09008 * 109.47306 * 184.99891 * 14 12 11 42 42 H 0.96997 * 119.99876 * 0.02562 * 15 14 12 43 43 H 1.09001 * 109.47074 * 60.00221 * 18 16 15 44 44 H 1.08995 * 109.47578 * 300.00055 * 18 16 15 45 45 H 0.97004 * 119.99922 * 180.02562 * 23 22 20 46 46 H 1.09006 * 109.50259 * 62.46031 * 28 8 3 47 47 H 1.09002 * 109.50664 * 302.33135 * 28 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6359 1.9708 -0.8635 5 6 3.5454 1.4431 -0.0702 6 7 4.1642 1.4198 -1.2672 7 8 4.2000 1.4645 0.9506 8 7 1.6070 2.1150 1.2321 9 6 2.2146 3.4489 1.3458 10 6 1.6913 4.1360 2.6098 11 8 1.9741 3.3138 3.7452 12 6 1.3970 2.0076 3.6681 13 1 0.3115 2.0917 3.6153 14 6 1.7872 1.2025 4.9094 15 7 1.1926 1.8189 6.0980 16 6 1.4027 1.2778 7.3143 17 8 2.0836 0.2802 7.4248 18 6 0.7916 1.9121 8.5370 19 16 1.2530 0.9597 10.0054 20 6 0.4276 1.8959 11.2492 21 1 -0.1451 2.7699 10.9762 22 6 0.5134 1.5100 12.5797 23 7 1.2109 0.4445 12.9123 24 14 -0.3554 2.5069 13.8991 25 1 -1.0610 3.6522 13.2700 26 1 -1.3389 1.6454 14.6033 27 1 0.6434 3.0159 14.8730 28 6 1.9173 1.2987 2.4148 29 1 -0.3633 0.4598 0.9192 30 1 -0.3634 0.5661 -0.8576 31 1 -0.3633 -1.0258 -0.0613 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 3.6407 1.4023 -2.0836 35 1 5.1332 1.4198 -1.3124 36 1 1.9508 4.0446 0.4718 37 1 3.2985 3.3518 1.4064 38 1 0.6144 4.2822 2.5254 39 1 2.1814 5.1023 2.7290 40 1 2.8725 1.1926 5.0096 41 1 1.4222 0.1803 4.8090 42 1 0.6477 2.6165 6.0096 43 1 -0.2938 1.9220 8.4371 44 1 1.1566 2.9343 8.6370 45 1 1.2706 0.1746 13.8421 46 1 2.9965 1.1667 2.4929 47 1 1.4366 0.3249 2.3212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698780711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:14 Heat of formation + Delta-G solvation = -112.466129 kcal Electronic energy + Delta-G solvation = -28293.594119 eV Core-core repulsion = 24216.792777 eV Total energy + Delta-G solvation = -4076.801342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21825 -39.40780 -38.65870 -36.52466 -34.66923 -34.36946 -33.08257 -32.37300 -31.78583 -29.37577 -28.78231 -26.63229 -25.44558 -25.12185 -22.88639 -22.45214 -21.17807 -20.47486 -19.98105 -18.08862 -17.78826 -17.47305 -16.82428 -16.71113 -16.12843 -16.04847 -15.49846 -15.34429 -14.94650 -14.86508 -14.75361 -14.71033 -14.41917 -13.92809 -13.75779 -13.44173 -13.02402 -12.94943 -12.77430 -12.56524 -12.44358 -12.31628 -11.93920 -11.66403 -11.60105 -11.41997 -11.14941 -11.02615 -10.95764 -10.79384 -10.76566 -10.68518 -10.19285 -9.90465 -9.74162 -9.28809 -9.02221 -8.76118 -8.62983 -8.15431 -6.42822 -6.16115 -3.85748 2.04603 2.96520 3.05012 3.22037 3.25235 3.25912 3.33588 3.41445 3.50359 3.83906 4.20239 4.26016 4.28888 4.44462 4.59185 4.67519 4.76330 4.82520 4.93697 4.98055 5.01970 5.08641 5.18947 5.20138 5.28081 5.32274 5.40867 5.52493 5.56417 5.62240 5.65073 5.70410 5.82085 5.91292 5.98630 6.01907 6.24074 6.24632 6.35823 6.44718 6.72230 6.76348 6.96800 7.65689 7.71816 7.84930 8.41366 8.73738 9.29262 10.91402 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.001863 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.541410 B =15024.424998 C =15206.050096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.067 3.933 4 H 0.106 0.894 5 C 0.487 3.513 6 N -0.855 5.855 7 O -0.531 6.531 8 N -0.503 5.503 9 C 0.002 3.998 10 C 0.069 3.931 11 O -0.373 6.373 12 C 0.087 3.913 13 H 0.071 0.929 14 C 0.132 3.868 15 N -0.732 5.732 16 C 0.532 3.468 17 O -0.520 6.520 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.533 4.533 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.002 3.998 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.401 0.599 35 H 0.400 0.600 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.400 0.600 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.267 0.733 46 H 0.086 0.914 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 4.871 -35.861 36.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C -0.045 4.045 4 H 0.123 0.877 5 C 0.270 3.730 6 N -0.419 5.419 7 O -0.407 6.407 8 N -0.226 5.226 9 C -0.126 4.126 10 C -0.008 4.008 11 O -0.291 6.291 12 C 0.029 3.971 13 H 0.089 0.911 14 C 0.007 3.993 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.395 6.395 18 C -0.303 4.303 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.126 4.126 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.229 0.771 35 H 0.230 0.770 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.234 0.766 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.104 0.896 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.153 3.226 -34.619 34.769 hybrid contribution -0.619 2.074 -0.218 2.175 sum -0.467 5.300 -34.837 35.241 Atomic orbital electron populations 1.21675 0.93671 1.01669 1.03077 1.21638 0.97972 0.92762 1.03246 1.22017 0.88783 0.98056 0.95662 0.87655 1.22110 0.92240 0.75035 0.83630 1.44092 1.11452 1.77723 1.08589 1.90754 1.67558 1.48676 1.33758 1.62667 1.56100 1.02701 1.01167 1.23007 0.99539 0.90306 0.99755 1.22571 1.00204 0.93722 0.84341 1.88086 1.75558 1.24344 1.41125 1.22366 0.97475 0.83482 0.93827 0.91119 1.21211 0.99761 0.95759 0.82575 1.45851 1.54830 1.31993 1.05985 1.20282 0.80210 0.84019 0.83687 1.90699 1.38030 1.24925 1.85828 1.23514 1.03556 1.04625 0.98558 1.85389 1.67984 1.36781 0.93324 1.22922 1.36629 1.15160 0.93458 0.90878 1.24997 0.95398 0.95382 0.97918 1.70034 1.38395 1.23533 1.18373 0.86114 0.79082 0.79623 0.80652 1.19622 1.20612 1.20609 1.23105 1.03362 0.97139 0.88977 0.91273 0.92595 0.92562 0.91055 0.90516 0.77087 0.76967 0.90090 0.91929 0.92348 0.88403 0.90732 0.90125 0.76564 0.89260 0.89190 0.92296 0.89585 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.60 37.16 0.36 -0.33 16 2 C -0.12 -0.60 4.88 -26.73 -0.13 -0.73 16 3 C 0.07 0.38 2.38 -68.87 -0.16 0.22 16 4 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 5 C 0.49 3.59 6.26 -10.99 -0.07 3.52 16 6 N -0.85 -3.06 8.87 31.22 0.28 -2.79 16 7 O -0.53 -6.44 13.21 5.55 0.07 -6.37 16 8 N -0.50 -3.88 4.23 -227.72 -0.96 -4.85 16 9 C 0.00 0.02 5.16 -3.71 -0.02 0.00 16 10 C 0.07 0.59 7.01 37.21 0.26 0.86 16 11 O -0.37 -4.43 10.42 -35.23 -0.37 -4.79 16 12 C 0.09 0.93 2.84 -26.68 -0.08 0.86 16 13 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 14 C 0.13 1.77 5.35 -4.04 -0.02 1.75 16 15 N -0.73 -11.02 5.50 -60.29 -0.33 -11.35 16 16 C 0.53 10.65 7.85 -10.99 -0.09 10.56 16 17 O -0.52 -12.49 15.86 5.55 0.09 -12.40 16 18 C -0.15 -3.23 6.16 36.00 0.22 -3.01 16 19 S -0.06 -1.72 20.57 -107.50 -2.21 -3.94 16 20 C -0.53 -15.58 9.50 30.94 0.29 -15.29 16 21 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.70 13.22 55.49 0.73 -25.97 16 24 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.00 0.02 3.89 -3.71 -0.01 0.01 16 29 H 0.07 0.43 7.33 -51.92 -0.38 0.05 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.52 6.08 -51.93 -0.32 0.20 16 34 H 0.40 0.16 8.83 -40.82 -0.36 -0.20 16 35 H 0.40 1.35 8.93 -40.82 -0.36 0.99 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.66 5.94 -51.93 -0.31 0.36 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 42 H 0.40 5.04 8.47 -40.82 -0.35 4.69 16 43 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 44 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.09 1.08 5.56 -51.93 -0.29 0.79 16 47 H 0.09 0.78 5.57 -51.93 -0.29 0.49 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -38.48 389.66 -8.67 -47.15 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.27 Total: 2.18 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 0.46 Total: 0.40 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.29 Total: -44.95 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.21 Total: -23.56 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.48 -8.67 -47.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698780711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.318 kcal (2) G-P(sol) polarization free energy of solvation -38.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds