Wall clock time and date at job start Wed Apr 1 2020 03:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47247 * 2 1 4 4 H 1.08999 * 109.46842 * 302.82918 * 3 2 1 5 5 C 1.50696 * 109.47094 * 182.83328 * 3 2 1 6 6 N 1.34769 * 120.00641 * 87.90113 * 5 3 2 7 7 O 1.21289 * 119.99706 * 267.90123 * 5 3 2 8 8 N 1.46895 * 109.47000 * 62.82976 * 3 2 1 9 9 C 1.47019 * 110.99953 * 173.05818 * 8 3 2 10 10 C 1.53093 * 109.25671 * 177.60807 * 9 8 3 11 11 O 1.43010 * 109.26379 * 56.84426 * 10 9 8 12 12 C 1.43008 * 113.73910 * 301.33330 * 11 10 9 13 13 H 1.09003 * 109.50785 * 298.68473 * 12 11 10 14 14 C 1.53001 * 109.50812 * 178.60000 * 12 11 10 15 15 N 1.46502 * 109.47098 * 64.99915 * 14 12 11 16 16 C 1.34777 * 120.00219 * 180.02562 * 15 14 12 17 17 O 1.21285 * 119.99733 * 359.97438 * 16 15 14 18 18 C 1.50691 * 120.00087 * 179.97438 * 16 15 14 19 19 S 1.81001 * 109.47211 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00286 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99752 * 0.02562 * 20 19 18 22 22 C 1.38800 * 120.00189 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99841 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99919 * 179.72602 * 22 20 19 25 25 H 1.48500 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47217 * 119.99705 * 24 22 20 27 27 H 1.48503 * 109.47185 * 239.99615 * 24 22 20 28 28 C 1.47009 * 111.00255 * 49.41904 * 8 3 2 29 29 H 1.09009 * 109.46840 * 296.57342 * 1 2 3 30 30 H 1.08992 * 109.47500 * 56.56924 * 1 2 3 31 31 H 1.08999 * 109.47194 * 176.58089 * 1 2 3 32 32 H 1.09006 * 109.46881 * 240.00109 * 2 1 3 33 33 H 1.09001 * 109.47846 * 120.00294 * 2 1 3 34 34 H 0.97001 * 119.99978 * 359.97438 * 6 5 3 35 35 H 0.97001 * 120.00564 * 180.02562 * 6 5 3 36 36 H 1.09005 * 109.50280 * 57.67036 * 9 8 3 37 37 H 1.08994 * 109.53755 * 297.56199 * 9 8 3 38 38 H 1.09007 * 109.50597 * 296.90893 * 10 9 8 39 39 H 1.09002 * 109.54298 * 176.80873 * 10 9 8 40 40 H 1.09001 * 109.47008 * 304.99949 * 14 12 11 41 41 H 1.09008 * 109.47306 * 184.99891 * 14 12 11 42 42 H 0.96997 * 119.99876 * 0.02562 * 15 14 12 43 43 H 1.09001 * 109.47074 * 60.00221 * 18 16 15 44 44 H 1.08995 * 109.47578 * 300.00055 * 18 16 15 45 45 H 0.97004 * 119.99922 * 180.02562 * 23 22 20 46 46 H 1.09006 * 109.50259 * 62.46031 * 28 8 3 47 47 H 1.09002 * 109.50664 * 302.33135 * 28 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6359 1.9708 -0.8635 5 6 3.5454 1.4431 -0.0702 6 7 4.1642 1.4198 -1.2672 7 8 4.2000 1.4645 0.9506 8 7 1.6070 2.1150 1.2321 9 6 2.2146 3.4489 1.3458 10 6 1.6913 4.1360 2.6098 11 8 1.9741 3.3138 3.7452 12 6 1.3970 2.0076 3.6681 13 1 0.3115 2.0917 3.6153 14 6 1.7872 1.2025 4.9094 15 7 1.1926 1.8189 6.0980 16 6 1.4027 1.2778 7.3143 17 8 2.0836 0.2802 7.4248 18 6 0.7916 1.9121 8.5370 19 16 1.2530 0.9597 10.0054 20 6 0.4276 1.8959 11.2492 21 1 -0.1451 2.7699 10.9762 22 6 0.5134 1.5100 12.5797 23 7 1.2109 0.4445 12.9123 24 14 -0.3554 2.5069 13.8991 25 1 -1.0610 3.6522 13.2700 26 1 -1.3389 1.6454 14.6033 27 1 0.6434 3.0159 14.8730 28 6 1.9173 1.2987 2.4148 29 1 -0.3633 0.4598 0.9192 30 1 -0.3634 0.5661 -0.8576 31 1 -0.3633 -1.0258 -0.0613 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 3.6407 1.4023 -2.0836 35 1 5.1332 1.4198 -1.3124 36 1 1.9508 4.0446 0.4718 37 1 3.2985 3.3518 1.4064 38 1 0.6144 4.2822 2.5254 39 1 2.1814 5.1023 2.7290 40 1 2.8725 1.1926 5.0096 41 1 1.4222 0.1803 4.8090 42 1 0.6477 2.6165 6.0096 43 1 -0.2938 1.9220 8.4371 44 1 1.1566 2.9343 8.6370 45 1 1.2706 0.1746 13.8421 46 1 2.9965 1.1667 2.4929 47 1 1.4366 0.3249 2.3212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698780711.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:13 Heat of formation + Delta-G solvation = -146.238441 kcal Electronic energy + Delta-G solvation = -28295.058596 eV Core-core repulsion = 24216.792777 eV Total energy + Delta-G solvation = -4078.265819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84677 -40.66461 -39.71348 -37.17637 -35.94297 -34.90160 -34.57993 -33.62300 -32.86910 -30.81643 -29.41304 -27.81442 -27.37925 -25.84378 -23.75830 -22.91988 -22.05697 -21.63659 -20.78450 -19.84826 -18.57090 -18.09784 -17.83335 -17.65316 -17.33642 -17.14759 -16.87607 -16.44601 -16.16554 -15.96187 -15.89163 -15.47482 -15.44717 -15.16107 -14.63723 -14.53957 -14.35920 -14.29303 -13.93737 -13.36806 -13.25031 -13.15731 -13.13375 -12.90498 -12.86644 -12.60389 -12.52839 -12.24387 -12.00403 -11.73250 -11.66477 -11.47591 -11.38258 -11.15256 -11.01236 -10.67302 -10.62498 -10.26854 -10.16147 -9.29717 -8.66403 -8.34066 -6.12274 1.26834 1.42183 1.46790 1.51130 1.58758 1.60787 2.20647 2.28265 2.54558 2.67064 2.73925 2.99935 3.32831 3.67034 3.81920 3.88330 3.92946 3.97809 4.03235 4.09497 4.12912 4.30093 4.33670 4.40653 4.44424 4.50757 4.51599 4.61267 4.63742 4.72433 4.83979 4.85500 4.94076 5.10106 5.17126 5.25197 5.37600 5.42921 5.53478 5.77214 5.78043 5.87128 6.18822 6.20957 6.41776 6.48807 7.07024 7.22561 7.29775 8.75564 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.001863 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.541410 B =15024.424998 C =15206.050096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.068 3.932 4 H 0.139 0.861 5 C 0.482 3.518 6 N -0.835 5.835 7 O -0.586 6.586 8 N -0.495 5.495 9 C 0.005 3.995 10 C 0.063 3.937 11 O -0.400 6.400 12 C 0.097 3.903 13 H 0.090 0.910 14 C 0.132 3.868 15 N -0.706 5.706 16 C 0.533 3.467 17 O -0.568 6.568 18 C -0.127 4.127 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.011 3.989 23 N -0.912 5.912 24 Si 1.001 2.999 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.275 1.275 28 C 0.010 3.990 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.419 0.581 35 H 0.402 0.598 36 H 0.109 0.891 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.416 0.584 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.271 0.729 46 H 0.055 0.945 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 6.895 -38.210 38.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.154 4.154 3 C -0.044 4.044 4 H 0.157 0.843 5 C 0.266 3.734 6 N -0.399 5.399 7 O -0.467 6.467 8 N -0.219 5.219 9 C -0.123 4.123 10 C -0.013 4.013 11 O -0.319 6.319 12 C 0.039 3.961 13 H 0.108 0.892 14 C 0.007 3.993 15 N -0.360 5.360 16 C 0.319 3.681 17 O -0.446 6.446 18 C -0.278 4.278 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.823 3.177 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.200 1.200 28 C -0.119 4.119 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.251 0.749 35 H 0.233 0.767 36 H 0.127 0.873 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.253 0.747 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.140 5.288 -37.080 37.517 hybrid contribution 0.135 1.462 0.298 1.499 sum -2.005 6.750 -36.782 37.450 Atomic orbital electron populations 1.21638 0.93100 1.01931 1.02994 1.21635 0.98308 0.92269 1.03163 1.22206 0.87739 0.98738 0.95694 0.84347 1.22414 0.92952 0.74382 0.83662 1.43943 1.11838 1.75738 1.08390 1.90752 1.68687 1.51422 1.35797 1.62712 1.55661 1.02446 1.01046 1.22990 0.97807 0.90806 1.00686 1.22792 1.01359 0.93597 0.83542 1.88038 1.76179 1.24818 1.42886 1.22240 0.98232 0.83080 0.92541 0.89221 1.21298 0.98174 0.96767 0.83018 1.45601 1.53689 1.31804 1.04903 1.20101 0.79776 0.83516 0.84689 1.90688 1.40292 1.27088 1.86540 1.23348 1.04999 1.03938 0.95559 1.85586 1.69273 1.39875 0.97778 1.23244 1.36736 1.15382 0.93919 0.89853 1.26166 0.96033 0.96512 1.00637 1.70197 1.39986 1.25500 1.19152 0.84870 0.77809 0.78100 0.76929 1.17983 1.19787 1.19995 1.22924 1.01366 0.97884 0.89692 0.92629 0.91107 0.92399 0.89130 0.92704 0.74931 0.76680 0.87286 0.94771 0.90695 0.87472 0.93255 0.89636 0.74664 0.86873 0.87440 0.91994 0.92726 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.60 71.98 0.69 -0.32 16 2 C -0.12 -0.97 4.88 30.60 0.15 -0.82 16 3 C 0.07 0.64 2.38 44.17 0.11 0.74 16 4 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 5 C 0.48 6.68 6.26 87.66 0.55 7.22 16 6 N -0.84 -4.55 8.87 -173.54 -1.54 -6.09 16 7 O -0.59 -14.77 13.21 -3.06 -0.04 -14.81 16 8 N -0.50 -6.85 4.23 -874.38 -3.70 -10.55 16 9 C 0.01 0.07 5.16 86.31 0.44 0.52 16 10 C 0.06 0.99 7.01 72.01 0.50 1.49 16 11 O -0.40 -9.20 10.42 -148.98 -1.55 -10.76 16 12 C 0.10 2.01 2.84 30.63 0.09 2.10 16 13 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 14 C 0.13 3.58 5.35 86.38 0.46 4.05 16 15 N -0.71 -20.76 5.50 -463.05 -2.55 -23.31 16 16 C 0.53 21.44 7.85 87.65 0.69 22.13 16 17 O -0.57 -28.19 15.86 -3.04 -0.05 -28.24 16 18 C -0.13 -5.35 6.16 71.23 0.44 -4.91 16 19 S -0.15 -8.78 20.57 -56.49 -1.16 -9.94 16 20 C -0.54 -31.95 9.50 67.95 0.65 -31.30 16 21 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 22 C 0.01 0.64 5.49 84.86 0.47 1.11 16 23 N -0.91 -57.20 13.22 21.65 0.29 -56.92 16 24 Si 1.00 44.55 29.55 68.60 2.03 46.58 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 C 0.01 0.19 3.89 86.32 0.34 0.53 16 29 H 0.05 0.57 7.33 -2.38 -0.02 0.55 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.05 0.72 6.08 -2.39 -0.01 0.70 16 34 H 0.42 -0.86 8.83 -92.71 -0.82 -1.68 16 35 H 0.40 2.25 8.93 -92.71 -0.83 1.42 16 36 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.03 0.72 5.94 -2.39 -0.01 0.71 16 38 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 41 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.42 9.66 8.47 -92.71 -0.79 8.88 16 43 H 0.11 4.22 8.14 -2.40 -0.02 4.20 16 44 H 0.11 4.15 8.14 -2.40 -0.02 4.13 16 45 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 46 H 0.05 1.46 5.56 -2.38 -0.01 1.44 16 47 H 0.10 1.70 5.57 -2.39 -0.01 1.69 16 Total: -1.00 -87.90 389.66 -4.12 -92.02 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -1.41 Total: 19.47 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 5.57 Total: 2.54 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -7.50 Total: -96.86 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -1.64 Total: -53.81 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -87.90 -4.12 -92.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698780711.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.214 kcal (2) G-P(sol) polarization free energy of solvation -87.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds