Wall clock time and date at job start Wed Apr 1 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00086 * 2 1 3 5 5 H 1.09000 * 109.47521 * 60.00160 * 4 2 1 6 6 C 1.53003 * 109.47332 * 180.02562 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21514 * 120.00133 * 359.97438 * 8 7 6 10 10 C 1.48154 * 119.99767 * 179.97438 * 8 7 6 11 11 C 1.39838 * 120.92131 * 359.71221 * 10 8 7 12 12 C 1.38125 * 119.00102 * 179.75867 * 11 10 8 13 13 N 1.31830 * 120.89825 * 0.53348 * 12 11 10 14 14 C 1.31805 * 122.04850 * 359.74123 * 13 12 11 15 15 C 1.50694 * 119.55469 * 180.02562 * 14 13 12 16 16 F 1.39903 * 109.46925 * 269.97794 * 15 14 13 17 17 F 1.39904 * 109.47297 * 29.97511 * 15 14 13 18 18 F 1.39891 * 109.47356 * 149.97584 * 15 14 13 19 19 C 1.38173 * 120.89078 * 359.97365 * 14 13 12 20 20 N 1.46505 * 109.47130 * 300.00074 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.08994 * 109.46999 * 59.99901 * 1 2 3 30 30 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47086 * 299.99896 * 1 2 3 32 32 H 1.08998 * 109.47497 * 240.00304 * 2 1 3 33 33 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 34 34 H 1.08992 * 109.47225 * 300.00492 * 3 2 1 35 35 H 1.09003 * 109.47030 * 60.00070 * 3 2 1 36 36 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 37 37 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 38 38 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 39 39 H 1.07997 * 120.50062 * 0.02562 * 11 10 8 40 40 H 1.08004 * 119.55532 * 180.27407 * 12 11 10 41 41 H 1.08001 * 120.49809 * 179.97438 * 19 14 13 42 42 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 43 43 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 3.5700 -0.7207 1.2495 7 7 4.0584 -1.3045 2.5013 8 6 5.3834 -1.4077 2.7249 9 8 6.1731 -1.0168 1.8880 10 6 5.8773 -1.9976 3.9910 11 6 4.9858 -2.4480 4.9697 12 6 5.4895 -2.9959 6.1333 13 7 6.7897 -3.0871 6.3310 14 6 7.6640 -2.6698 5.4374 15 6 9.1380 -2.8018 5.7216 16 9 9.5938 -1.6471 6.3668 17 9 9.3568 -3.9125 6.5437 18 9 9.8319 -2.9684 4.5184 19 6 7.2474 -2.1139 4.2430 20 7 1.5517 -0.0306 2.4454 21 6 0.3102 -0.3211 2.9447 22 1 -0.3089 -1.0596 2.4570 23 6 -0.1502 0.3291 4.0815 24 7 0.6044 1.2286 4.6762 25 14 -1.8407 -0.0727 4.7672 26 1 -1.7260 -1.1804 5.7495 27 1 -2.4009 1.1278 5.4382 28 1 -2.7392 -0.4849 3.6590 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.9337 -1.3099 0.4076 37 1 3.9331 0.3032 1.1601 38 1 3.4280 -1.6162 3.1695 39 1 3.9194 -2.3725 4.8163 40 1 4.8090 -3.3507 6.8932 41 1 7.9693 -1.7737 3.5154 42 1 2.1078 0.6323 2.8837 43 1 0.2825 1.6833 5.4704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698976981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:50 Heat of formation + Delta-G solvation = -143.474688 kcal Electronic energy + Delta-G solvation = -30285.648224 eV Core-core repulsion = 25530.201559 eV Total energy + Delta-G solvation = -4755.446666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.36725 -47.90629 -47.80951 -40.94157 -39.26647 -37.43295 -34.30541 -33.14311 -32.99694 -32.40900 -30.30318 -28.26790 -26.93852 -26.43101 -25.00404 -23.61599 -23.28646 -22.16321 -20.68951 -19.35461 -18.74474 -18.69873 -18.54047 -17.50209 -17.20111 -16.65215 -15.98635 -15.61495 -15.45066 -14.92891 -14.87278 -14.66150 -14.59684 -14.35606 -14.26487 -14.11904 -13.99740 -13.97243 -13.90515 -13.49695 -13.26287 -13.18396 -12.90226 -12.35666 -12.05295 -12.03579 -11.41268 -11.13657 -11.02116 -10.90391 -10.70828 -10.41809 -10.35781 -10.30352 -10.21804 -10.04794 -9.84148 -9.79005 -9.58103 -9.04192 -8.87864 -7.15184 -5.92986 -3.22657 0.23981 0.48675 2.19343 2.64593 3.05853 3.27028 3.31017 3.38423 3.39008 3.40129 3.72239 4.15705 4.27223 4.38692 4.44226 4.54054 4.59957 4.78675 5.22602 5.23464 5.31548 5.38472 5.40200 5.60371 5.63671 5.71578 5.75488 5.96895 6.02118 6.10972 6.25455 6.30200 6.42592 6.51911 6.58336 6.69695 6.75579 6.96280 7.23679 7.25653 7.56516 7.58450 8.17827 8.24016 9.36476 9.89680 10.25968 11.28359 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.002797 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.457320 B =10008.214132 C =11521.242232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.167 3.833 5 H 0.055 0.945 6 C 0.110 3.890 7 N -0.698 5.698 8 C 0.553 3.447 9 O -0.537 6.537 10 C -0.079 4.079 11 C -0.102 4.102 12 C 0.106 3.894 13 N -0.432 5.432 14 C 0.026 3.974 15 C 0.527 3.473 16 F -0.170 7.170 17 F -0.164 7.164 18 F -0.170 7.170 19 C -0.070 4.070 20 N -0.719 5.719 21 C -0.240 4.240 22 H 0.073 0.927 23 C -0.008 4.008 24 N -0.928 5.928 25 Si 0.901 3.099 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.031 0.969 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.411 0.589 39 H 0.159 0.841 40 H 0.179 0.821 41 H 0.160 0.840 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.147 -8.157 -1.114 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.200 4.200 4 C 0.057 3.943 5 H 0.073 0.927 6 C -0.014 4.014 7 N -0.349 5.349 8 C 0.338 3.662 9 O -0.415 6.415 10 C -0.090 4.090 11 C -0.122 4.122 12 C -0.052 4.052 13 N -0.141 5.141 14 C -0.112 4.112 15 C 0.471 3.529 16 F -0.151 7.151 17 F -0.145 7.145 18 F -0.151 7.151 19 C -0.090 4.090 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.091 0.909 23 C -0.205 4.205 24 N -0.576 5.576 25 Si 0.732 3.268 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.249 0.751 39 H 0.176 0.824 40 H 0.196 0.804 41 H 0.178 0.822 42 H 0.220 0.780 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.852 -8.287 -0.902 14.490 hybrid contribution -1.299 0.342 0.186 1.356 sum 10.553 -7.945 -0.716 13.229 Atomic orbital electron populations 1.21834 0.94909 1.00878 1.02163 1.21611 0.96879 0.96573 0.97814 1.21804 0.99659 0.96761 1.01767 1.20561 0.88993 0.96123 0.88662 0.92738 1.21892 0.96036 0.98775 0.84724 1.45899 1.05980 1.61317 1.21732 1.17947 0.83175 0.79489 0.85608 1.90777 1.55517 1.49270 1.45908 1.20470 0.93515 0.99200 0.95816 1.22806 1.02215 0.93891 0.93298 1.22851 0.90191 0.95665 0.96497 1.67054 1.03777 1.13050 1.30251 1.20824 0.93202 1.03592 0.93609 1.17760 0.86207 0.74499 0.74421 1.93249 1.90267 1.49713 1.81863 1.93232 1.95494 1.53039 1.72778 1.93224 1.81048 1.95268 1.45576 1.21923 0.96578 0.94319 0.96214 1.42447 1.18105 1.47527 1.28027 1.19185 0.92920 1.18335 1.06601 0.90897 1.24711 0.98218 0.99101 0.98426 1.69651 1.36927 1.28924 1.22057 0.86290 0.84302 0.77213 0.78951 1.21755 1.21876 1.20752 0.94949 0.94117 0.89340 0.93191 0.93661 0.94214 0.91221 0.91452 0.90815 0.75133 0.82369 0.80427 0.82231 0.78044 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.26 37.16 0.31 -2.04 16 2 C -0.11 -1.67 2.80 -90.62 -0.25 -1.92 16 3 C -0.14 -2.25 8.69 37.16 0.32 -1.92 16 4 C 0.17 2.74 2.35 -67.93 -0.16 2.58 16 5 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 6 C 0.11 1.65 5.01 -4.04 -0.02 1.63 16 7 N -0.70 -10.09 5.35 -61.15 -0.33 -10.42 16 8 C 0.55 8.25 7.80 -12.19 -0.10 8.16 16 9 O -0.54 -9.45 16.45 5.35 0.09 -9.36 16 10 C -0.08 -1.00 5.91 -104.65 -0.62 -1.62 16 11 C -0.10 -1.10 9.62 -39.02 -0.38 -1.47 16 12 C 0.11 1.09 11.17 -17.59 -0.20 0.89 16 13 N -0.43 -5.29 9.93 -9.52 -0.09 -5.39 16 14 C 0.03 0.32 6.29 -82.63 -0.52 -0.20 16 15 C 0.53 6.13 3.43 36.00 0.12 6.25 16 16 F -0.17 -2.04 17.30 2.25 0.04 -2.00 16 17 F -0.16 -1.98 17.03 2.25 0.04 -1.94 16 18 F -0.17 -1.88 16.44 2.25 0.04 -1.85 16 19 C -0.07 -0.86 9.00 -39.02 -0.35 -1.21 16 20 N -0.72 -14.56 3.67 -53.42 -0.20 -14.75 16 21 C -0.24 -5.53 7.57 -15.06 -0.11 -5.64 16 22 H 0.07 1.66 7.40 -52.49 -0.39 1.28 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 24 N -0.93 -24.87 13.06 55.49 0.72 -24.15 16 25 Si 0.90 20.21 29.55 -169.99 -5.02 15.19 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.76 6.01 -51.93 -0.31 1.45 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.67 6.32 -51.93 -0.33 0.34 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.29 7.60 -51.93 -0.39 0.89 16 36 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.07 1.19 6.17 -51.93 -0.32 0.87 16 38 H 0.41 5.77 6.28 -40.82 -0.26 5.52 16 39 H 0.16 1.53 6.54 -52.49 -0.34 1.18 16 40 H 0.18 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.16 1.88 7.29 -52.49 -0.38 1.50 16 42 H 0.39 8.66 7.80 -40.82 -0.32 8.35 16 43 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -27.49 370.07 -6.32 -33.81 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.14 Total: 12.09 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.05 Total: 3.19 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.11 Total: -54.71 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.11 Total: -5.79 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.49 -6.32 -33.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698976981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.661 kcal (2) G-P(sol) polarization free energy of solvation -27.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds