Wall clock time and date at job start Wed Apr 1 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00086 * 2 1 3 5 5 H 1.09000 * 109.47521 * 60.00160 * 4 2 1 6 6 C 1.53003 * 109.47332 * 180.02562 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21514 * 120.00133 * 359.97438 * 8 7 6 10 10 C 1.48154 * 119.99767 * 179.97438 * 8 7 6 11 11 C 1.39838 * 120.92131 * 359.71221 * 10 8 7 12 12 C 1.38125 * 119.00102 * 179.75867 * 11 10 8 13 13 N 1.31830 * 120.89825 * 0.53348 * 12 11 10 14 14 C 1.31805 * 122.04850 * 359.74123 * 13 12 11 15 15 C 1.50694 * 119.55469 * 180.02562 * 14 13 12 16 16 F 1.39903 * 109.46925 * 269.97794 * 15 14 13 17 17 F 1.39904 * 109.47297 * 29.97511 * 15 14 13 18 18 F 1.39891 * 109.47356 * 149.97584 * 15 14 13 19 19 C 1.38173 * 120.89078 * 359.97365 * 14 13 12 20 20 N 1.46505 * 109.47130 * 300.00074 * 4 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 4 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 4 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 4 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48498 * 109.47174 * 90.00121 * 25 23 21 27 27 H 1.48501 * 109.47062 * 210.00072 * 25 23 21 28 28 H 1.48504 * 109.46913 * 329.99871 * 25 23 21 29 29 H 1.08994 * 109.46999 * 59.99901 * 1 2 3 30 30 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47086 * 299.99896 * 1 2 3 32 32 H 1.08998 * 109.47497 * 240.00304 * 2 1 3 33 33 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 34 34 H 1.08992 * 109.47225 * 300.00492 * 3 2 1 35 35 H 1.09003 * 109.47030 * 60.00070 * 3 2 1 36 36 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 37 37 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 38 38 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 39 39 H 1.07997 * 120.50062 * 0.02562 * 11 10 8 40 40 H 1.08004 * 119.55532 * 180.27407 * 12 11 10 41 41 H 1.08001 * 120.49809 * 179.97438 * 19 14 13 42 42 H 0.97000 * 119.99792 * 264.99726 * 20 4 2 43 43 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 3.5700 -0.7207 1.2495 7 7 4.0584 -1.3045 2.5013 8 6 5.3834 -1.4077 2.7249 9 8 6.1731 -1.0168 1.8880 10 6 5.8773 -1.9976 3.9910 11 6 4.9858 -2.4480 4.9697 12 6 5.4895 -2.9959 6.1333 13 7 6.7897 -3.0871 6.3310 14 6 7.6640 -2.6698 5.4374 15 6 9.1380 -2.8018 5.7216 16 9 9.5938 -1.6471 6.3668 17 9 9.3568 -3.9125 6.5437 18 9 9.8319 -2.9684 4.5184 19 6 7.2474 -2.1139 4.2430 20 7 1.5517 -0.0306 2.4454 21 6 0.3102 -0.3211 2.9447 22 1 -0.3089 -1.0596 2.4570 23 6 -0.1502 0.3291 4.0815 24 7 0.6044 1.2286 4.6762 25 14 -1.8407 -0.0727 4.7672 26 1 -1.7260 -1.1804 5.7495 27 1 -2.4009 1.1278 5.4382 28 1 -2.7392 -0.4849 3.6590 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.9337 -1.3099 0.4076 37 1 3.9331 0.3032 1.1601 38 1 3.4280 -1.6162 3.1695 39 1 3.9194 -2.3725 4.8163 40 1 4.8090 -3.3507 6.8932 41 1 7.9693 -1.7737 3.5154 42 1 2.1078 0.6323 2.8837 43 1 0.2825 1.6833 5.4704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698976981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:49 Heat of formation + Delta-G solvation = -159.617430 kcal Electronic energy + Delta-G solvation = -30286.348226 eV Core-core repulsion = 25530.201559 eV Total energy + Delta-G solvation = -4756.146667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.29514 -48.82489 -48.75049 -41.92875 -40.42062 -38.81155 -35.55337 -34.73492 -34.09965 -33.32284 -31.91683 -29.66119 -27.86131 -27.74932 -26.24953 -25.16162 -24.21852 -23.45033 -21.81700 -20.52771 -19.81651 -19.67061 -19.60255 -19.11275 -18.31366 -17.69526 -17.03344 -16.80368 -16.65205 -16.29418 -15.92168 -15.77370 -15.68831 -15.54937 -15.23585 -15.18188 -15.08597 -15.01076 -14.90815 -14.88262 -14.63771 -14.48834 -13.97272 -13.74726 -13.39905 -12.94934 -12.87452 -12.80332 -12.63991 -12.41749 -12.14189 -11.92908 -11.87820 -11.56255 -11.34445 -11.29850 -11.15576 -10.93033 -10.77848 -10.67442 -10.09898 -8.90532 -7.82756 -5.08544 -0.71395 -0.43012 1.27322 1.52666 1.56742 1.59050 1.61430 1.94763 2.35430 2.39412 2.63759 2.78855 3.23158 3.34597 3.44260 3.52116 3.59925 3.67453 3.84398 3.94586 3.99212 4.29498 4.35605 4.37637 4.44580 4.47295 4.69027 4.71906 4.78260 4.97925 5.00342 5.12690 5.16844 5.24312 5.29134 5.34756 5.48181 5.62100 5.68494 5.85436 6.34668 6.37152 6.41022 7.00650 7.46695 8.17561 8.42891 9.39550 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.002797 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.457320 B =10008.214132 C =11521.242232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.169 3.831 5 H 0.062 0.938 6 C 0.116 3.884 7 N -0.695 5.695 8 C 0.555 3.445 9 O -0.567 6.567 10 C -0.091 4.091 11 C -0.092 4.092 12 C 0.112 3.888 13 N -0.445 5.445 14 C 0.020 3.980 15 C 0.530 3.470 16 F -0.173 7.173 17 F -0.166 7.166 18 F -0.167 7.167 19 C -0.072 4.072 20 N -0.721 5.721 21 C -0.210 4.210 22 H 0.079 0.921 23 C -0.065 4.065 24 N -0.964 5.964 25 Si 0.951 3.049 26 H -0.289 1.289 27 H -0.310 1.310 28 H -0.275 1.275 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.035 0.965 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.414 0.586 39 H 0.172 0.828 40 H 0.212 0.788 41 H 0.160 0.840 42 H 0.374 0.626 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.842 -9.624 -1.942 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.194 4.194 4 C 0.060 3.940 5 H 0.080 0.920 6 C -0.008 4.008 7 N -0.345 5.345 8 C 0.341 3.659 9 O -0.448 6.448 10 C -0.103 4.103 11 C -0.113 4.113 12 C -0.046 4.046 13 N -0.155 5.155 14 C -0.118 4.118 15 C 0.475 3.525 16 F -0.154 7.154 17 F -0.147 7.147 18 F -0.148 7.148 19 C -0.093 4.093 20 N -0.362 5.362 21 C -0.342 4.342 22 H 0.097 0.903 23 C -0.257 4.257 24 N -0.616 5.616 25 Si 0.783 3.217 26 H -0.216 1.216 27 H -0.238 1.238 28 H -0.201 1.201 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.252 0.748 39 H 0.189 0.811 40 H 0.229 0.771 41 H 0.178 0.822 42 H 0.206 0.794 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.542 -9.797 -1.770 15.243 hybrid contribution -1.202 0.759 0.343 1.463 sum 10.340 -9.038 -1.427 13.807 Atomic orbital electron populations 1.21755 0.95581 1.00924 1.01152 1.21587 0.96200 0.96531 0.98312 1.21730 1.00180 0.96712 1.00783 1.20699 0.89862 0.95931 0.87497 0.92022 1.21791 0.94796 0.98575 0.85589 1.45851 1.06012 1.61024 1.21653 1.18194 0.82885 0.78872 0.85949 1.90757 1.56149 1.50722 1.47128 1.20339 0.94020 1.00372 0.95523 1.22968 1.02544 0.92882 0.92859 1.23409 0.89924 0.94449 0.96797 1.67117 1.04593 1.13383 1.30387 1.20854 0.93455 1.03884 0.93629 1.17693 0.86117 0.74303 0.74405 1.93242 1.90299 1.49898 1.81956 1.93224 1.95501 1.53140 1.72881 1.93228 1.80991 1.95238 1.45385 1.21925 0.96560 0.94466 0.96382 1.42516 1.17134 1.47388 1.29124 1.19432 0.93373 1.16320 1.05098 0.90311 1.25217 1.00627 1.00167 0.99739 1.69782 1.38213 1.30917 1.22638 0.85478 0.81817 0.76107 0.78343 1.21594 1.23793 1.20062 0.93323 0.93468 0.92987 0.90244 0.92791 0.92753 0.94586 0.89798 0.91967 0.74803 0.81106 0.77130 0.82247 0.79391 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 8.26 71.98 0.59 -3.67 16 2 C -0.10 -3.01 2.80 -10.79 -0.03 -3.04 16 3 C -0.14 -4.10 8.69 71.98 0.63 -3.47 16 4 C 0.17 5.20 2.35 44.99 0.11 5.30 16 5 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 6 C 0.12 3.29 5.01 86.38 0.43 3.72 16 7 N -0.69 -19.18 5.35 -465.66 -2.49 -21.67 16 8 C 0.55 16.10 7.80 86.88 0.68 16.77 16 9 O -0.57 -19.71 16.45 -3.76 -0.06 -19.77 16 10 C -0.09 -2.24 5.91 -19.88 -0.12 -2.36 16 11 C -0.09 -1.83 9.62 22.63 0.22 -1.61 16 12 C 0.11 2.06 11.17 84.67 0.95 3.00 16 13 N -0.45 -10.21 9.93 -184.04 -1.83 -12.04 16 14 C 0.02 0.47 6.29 42.55 0.27 0.73 16 15 C 0.53 12.00 3.43 71.23 0.24 12.24 16 16 F -0.17 -4.06 17.30 44.97 0.78 -3.28 16 17 F -0.17 -3.87 17.03 44.97 0.77 -3.10 16 18 F -0.17 -3.62 16.44 44.97 0.74 -2.88 16 19 C -0.07 -1.75 9.00 22.63 0.20 -1.54 16 20 N -0.72 -28.63 3.67 -322.93 -1.19 -29.82 16 21 C -0.21 -9.51 7.57 84.04 0.64 -8.88 16 22 H 0.08 3.45 7.40 -2.91 -0.02 3.43 16 23 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 24 N -0.96 -52.49 13.06 21.65 0.28 -52.21 16 25 Si 0.95 41.60 29.55 68.60 2.03 43.63 16 26 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 28 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.05 2.01 6.01 -2.39 -0.01 2.00 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.51 6.32 -2.39 -0.02 1.49 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.03 1.31 7.60 -2.39 -0.02 1.30 16 36 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.06 1.94 6.17 -2.39 -0.01 1.92 16 38 H 0.41 11.00 6.28 -92.71 -0.58 10.41 16 39 H 0.17 2.93 6.54 -2.91 -0.02 2.91 16 40 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.16 3.76 7.29 -2.91 -0.02 3.74 16 42 H 0.37 16.82 7.80 -92.71 -0.72 16.10 16 43 H 0.25 13.40 8.31 -92.70 -0.77 12.63 16 Total: -1.00 -58.79 370.07 4.08 -54.71 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.22 Total: 31.99 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 5.27 Total: 14.44 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -5.22 Total: -115.73 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.06 Total: -19.77 kcal Atomic # 9 Polarization: -11.54 SS G_CDS: 2.28 Total: -9.26 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -58.79 4.08 -54.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698976981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.908 kcal (2) G-P(sol) polarization free energy of solvation -58.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds