Wall clock time and date at job start Wed Apr 1 2020 03:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21520 * 119.99912 * 0.02562 * 8 7 6 10 10 C 1.48150 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.39833 * 120.92239 * 359.72008 * 10 8 7 12 12 C 1.38123 * 119.00209 * 179.75269 * 11 10 8 13 13 N 1.31830 * 120.89961 * 0.53869 * 12 11 10 14 14 C 1.31793 * 122.04583 * 359.73373 * 13 12 11 15 15 C 1.50701 * 119.55239 * 180.02562 * 14 13 12 16 16 F 1.39902 * 109.46922 * 269.97877 * 15 14 13 17 17 F 1.39895 * 109.46984 * 29.97540 * 15 14 13 18 18 F 1.39897 * 109.47302 * 149.98059 * 15 14 13 19 19 C 1.38173 * 120.89855 * 359.97438 * 14 13 12 20 20 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 30 30 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 31 31 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 33 33 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 35 35 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 36 36 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 37 37 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 38 38 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 39 39 H 1.08004 * 120.49623 * 0.02562 * 11 10 8 40 40 H 1.08010 * 119.55382 * 180.27326 * 12 11 10 41 41 H 1.07994 * 120.50348 * 179.97438 * 19 14 13 42 42 H 0.97004 * 119.99747 * 95.00774 * 20 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0584 -1.5141 2.3803 8 6 5.3834 -1.6553 2.5820 9 8 6.1731 -1.1252 1.8257 10 6 5.8772 -2.4570 3.7259 11 6 4.9858 -3.0705 4.6114 12 6 5.4896 -3.8131 5.6615 13 7 6.7897 -3.9379 5.8400 14 6 7.6640 -3.3718 5.0324 15 6 9.1381 -3.5520 5.2888 16 9 9.5945 -2.5275 6.1251 17 9 9.3564 -4.7889 5.9048 18 9 9.8316 -3.5067 4.0747 19 6 7.2474 -2.6162 3.9532 20 7 1.5517 -2.1025 1.2491 21 6 0.3102 -2.3897 1.7504 22 1 -0.3092 -1.5980 2.1454 23 6 -0.1524 -3.6985 1.7509 24 7 0.6002 -4.6626 1.2645 25 14 -1.8463 -4.0903 2.4340 26 1 -2.1036 -5.5479 2.3138 27 1 -1.9075 -3.6930 3.8636 28 1 -2.8744 -3.3413 1.6677 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9331 -1.1563 0.3175 37 1 3.9337 0.3018 1.3383 38 1 3.4281 -1.9369 2.9842 39 1 3.9194 -2.9690 4.4737 40 1 4.8090 -4.2945 6.3483 41 1 7.9694 -2.1548 3.2957 42 1 2.1078 -2.8135 0.8941 43 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698976982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:53 Heat of formation + Delta-G solvation = -144.797192 kcal Electronic energy + Delta-G solvation = -30225.098957 eV Core-core repulsion = 25469.594943 eV Total energy + Delta-G solvation = -4755.504014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.39780 -47.93637 -47.84010 -41.00077 -39.34116 -37.48494 -34.38832 -33.56745 -33.17163 -32.45713 -30.38166 -28.23637 -26.98090 -26.26413 -24.94292 -23.52367 -23.32062 -22.09805 -20.78071 -19.71126 -18.90587 -18.77628 -18.69339 -17.62797 -17.33299 -16.74414 -16.07466 -15.64329 -15.47794 -15.07793 -14.85184 -14.75685 -14.62805 -14.37051 -14.29637 -14.15058 -14.00666 -13.99928 -13.88106 -13.76457 -13.57146 -13.25061 -12.94593 -12.37924 -12.12164 -12.07753 -11.75512 -11.35920 -11.07066 -10.89428 -10.62442 -10.43271 -10.36035 -10.25364 -10.19554 -10.00252 -9.91592 -9.83852 -9.33252 -9.06408 -8.97109 -7.23534 -6.24179 -3.27445 0.18374 0.43570 2.15587 2.58096 2.97906 3.23587 3.32534 3.41275 3.43614 3.61460 3.68120 4.12079 4.22397 4.33080 4.47657 4.51789 4.55040 4.72377 5.12236 5.16341 5.18573 5.31938 5.37061 5.47274 5.54438 5.60076 5.65967 5.78875 5.96192 5.97048 6.06038 6.18381 6.26009 6.33123 6.44026 6.44868 6.65717 6.88764 7.16885 7.19171 7.48896 7.66333 8.08921 8.58831 9.02255 9.89326 10.03724 11.22174 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.002819 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.431935 B = 9930.531678 C =11627.477281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.150 4.150 4 C 0.175 3.825 5 H 0.056 0.944 6 C 0.110 3.890 7 N -0.700 5.700 8 C 0.553 3.447 9 O -0.535 6.535 10 C -0.080 4.080 11 C -0.103 4.103 12 C 0.107 3.893 13 N -0.431 5.431 14 C 0.027 3.973 15 C 0.527 3.473 16 F -0.171 7.171 17 F -0.163 7.163 18 F -0.169 7.169 19 C -0.069 4.069 20 N -0.733 5.733 21 C -0.331 4.331 22 H 0.068 0.932 23 C -0.040 4.040 24 N -0.939 5.939 25 Si 1.074 2.926 26 H -0.286 1.286 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.410 0.590 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.160 0.840 42 H 0.367 0.633 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.041 5.955 7.004 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.208 4.208 4 C 0.065 3.935 5 H 0.074 0.926 6 C -0.014 4.014 7 N -0.352 5.352 8 C 0.338 3.662 9 O -0.413 6.413 10 C -0.091 4.091 11 C -0.123 4.123 12 C -0.051 4.051 13 N -0.140 5.140 14 C -0.111 4.111 15 C 0.471 3.529 16 F -0.152 7.152 17 F -0.144 7.144 18 F -0.150 7.150 19 C -0.090 4.090 20 N -0.376 5.376 21 C -0.462 4.462 22 H 0.086 0.914 23 C -0.238 4.238 24 N -0.584 5.584 25 Si 0.905 3.095 26 H -0.211 1.211 27 H -0.222 1.222 28 H -0.222 1.222 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.248 0.752 39 H 0.175 0.825 40 H 0.197 0.803 41 H 0.178 0.822 42 H 0.201 0.799 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.670 4.768 7.539 13.907 hybrid contribution 0.726 1.322 -0.875 1.743 sum 11.396 6.090 6.664 14.538 Atomic orbital electron populations 1.21811 0.94674 1.04007 0.99086 1.21713 0.97155 0.94475 0.99699 1.21947 1.00440 0.97235 1.01142 1.20499 0.88793 0.87840 0.96400 0.92571 1.21889 0.96049 0.95045 0.88371 1.45914 1.06037 1.52237 1.31004 1.17968 0.83118 0.80867 0.84248 1.90782 1.55480 1.48398 1.46632 1.20453 0.93567 0.98634 0.96452 1.22794 1.02127 0.93946 0.93471 1.22863 0.90212 0.95607 0.96399 1.67059 1.03759 1.16829 1.26375 1.20838 0.93257 1.01121 0.95918 1.17752 0.86165 0.74622 0.74340 1.93242 1.90265 1.59594 1.72082 1.93236 1.95481 1.42704 1.83014 1.93231 1.81034 1.96144 1.44636 1.21925 0.96526 0.94841 0.95720 1.42495 1.18414 1.01950 1.74768 1.19979 0.93717 0.95243 1.37230 0.91397 1.25695 1.05590 0.91465 1.01060 1.70909 1.11377 1.33299 1.42788 0.83313 0.74553 0.76152 0.75475 1.21106 1.22248 1.22234 0.93998 0.94915 0.89452 0.92008 0.93059 0.93381 0.93088 0.91473 0.90925 0.75205 0.82493 0.80337 0.82203 0.79897 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.26 37.16 0.31 -2.06 16 2 C -0.11 -1.72 2.69 -90.62 -0.24 -1.96 16 3 C -0.15 -1.94 8.84 37.15 0.33 -1.61 16 4 C 0.18 2.92 2.18 -67.93 -0.15 2.77 16 5 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 6 C 0.11 1.67 4.73 -4.04 -0.02 1.65 16 7 N -0.70 -10.14 5.35 -61.15 -0.33 -10.46 16 8 C 0.55 8.22 7.80 -12.19 -0.10 8.12 16 9 O -0.53 -9.37 16.45 5.35 0.09 -9.28 16 10 C -0.08 -1.01 5.91 -104.65 -0.62 -1.63 16 11 C -0.10 -1.11 9.62 -39.03 -0.38 -1.48 16 12 C 0.11 1.10 11.17 -17.59 -0.20 0.90 16 13 N -0.43 -5.25 9.93 -9.52 -0.09 -5.34 16 14 C 0.03 0.33 6.29 -82.63 -0.52 -0.19 16 15 C 0.53 6.08 3.43 36.01 0.12 6.21 16 16 F -0.17 -1.96 17.30 2.25 0.04 -1.92 16 17 F -0.16 -1.99 17.03 2.25 0.04 -1.95 16 18 F -0.17 -1.90 16.44 2.25 0.04 -1.86 16 19 C -0.07 -0.85 9.00 -39.02 -0.35 -1.20 16 20 N -0.73 -15.16 4.44 -53.43 -0.24 -15.39 16 21 C -0.33 -7.84 7.57 -15.06 -0.11 -7.95 16 22 H 0.07 1.61 7.39 -52.48 -0.39 1.22 16 23 C -0.04 -1.02 5.50 -17.43 -0.10 -1.11 16 24 N -0.94 -26.18 13.70 55.49 0.76 -25.42 16 25 Si 1.07 23.52 29.92 -169.99 -5.09 18.44 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.30 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.79 6.01 -51.93 -0.31 1.48 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.62 6.55 -51.93 -0.34 0.28 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.03 6.71 -51.93 -0.35 0.68 16 38 H 0.41 5.81 6.28 -40.82 -0.26 5.55 16 39 H 0.16 1.52 6.54 -52.48 -0.34 1.17 16 40 H 0.18 1.28 8.06 -52.48 -0.42 0.85 16 41 H 0.16 1.87 7.28 -52.49 -0.38 1.49 16 42 H 0.37 8.17 6.63 -40.82 -0.27 7.90 16 43 H 0.26 7.03 6.77 -40.82 -0.28 6.75 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -28.68 370.02 -6.32 -35.00 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.09 Total: 12.17 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.02 Total: 0.46 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.10 Total: -56.62 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.11 Total: -5.73 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.09 Total: 18.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.68 -6.32 -35.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698976982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.800 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds