Wall clock time and date at job start Wed Apr 1 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21520 * 119.99912 * 0.02562 * 8 7 6 10 10 C 1.48150 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.39833 * 120.92239 * 359.72008 * 10 8 7 12 12 C 1.38123 * 119.00209 * 179.75269 * 11 10 8 13 13 N 1.31830 * 120.89961 * 0.53869 * 12 11 10 14 14 C 1.31793 * 122.04583 * 359.73373 * 13 12 11 15 15 C 1.50701 * 119.55239 * 180.02562 * 14 13 12 16 16 F 1.39902 * 109.46922 * 269.97877 * 15 14 13 17 17 F 1.39895 * 109.46984 * 29.97540 * 15 14 13 18 18 F 1.39897 * 109.47302 * 149.98059 * 15 14 13 19 19 C 1.38173 * 120.89855 * 359.97438 * 14 13 12 20 20 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 21 21 C 1.36935 * 120.00239 * 275.00034 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 30 30 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 31 31 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 33 33 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 35 35 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 36 36 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 37 37 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 38 38 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 39 39 H 1.08004 * 120.49623 * 0.02562 * 11 10 8 40 40 H 1.08010 * 119.55382 * 180.27326 * 12 11 10 41 41 H 1.07994 * 120.50348 * 179.97438 * 19 14 13 42 42 H 0.97004 * 119.99747 * 95.00774 * 20 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0584 -1.5141 2.3803 8 6 5.3834 -1.6553 2.5820 9 8 6.1731 -1.1252 1.8257 10 6 5.8772 -2.4570 3.7259 11 6 4.9858 -3.0705 4.6114 12 6 5.4896 -3.8131 5.6615 13 7 6.7897 -3.9379 5.8400 14 6 7.6640 -3.3718 5.0324 15 6 9.1381 -3.5520 5.2888 16 9 9.5945 -2.5275 6.1251 17 9 9.3564 -4.7889 5.9048 18 9 9.8316 -3.5067 4.0747 19 6 7.2474 -2.6162 3.9532 20 7 1.5517 -2.1025 1.2491 21 6 0.3102 -2.3897 1.7504 22 1 -0.3092 -1.5980 2.1454 23 6 -0.1524 -3.6985 1.7509 24 7 0.6002 -4.6626 1.2645 25 14 -1.8463 -4.0903 2.4340 26 1 -2.1036 -5.5479 2.3138 27 1 -1.9075 -3.6930 3.8636 28 1 -2.8744 -3.3413 1.6677 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9331 -1.1563 0.3175 37 1 3.9337 0.3018 1.3383 38 1 3.4281 -1.9369 2.9842 39 1 3.9194 -2.9690 4.4737 40 1 4.8090 -4.2945 6.3483 41 1 7.9694 -2.1548 3.2957 42 1 2.1078 -2.8135 0.8941 43 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698976982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:52 Heat of formation + Delta-G solvation = -162.122148 kcal Electronic energy + Delta-G solvation = -30225.850223 eV Core-core repulsion = 25469.594943 eV Total energy + Delta-G solvation = -4756.255280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.32021 -48.84978 -48.77501 -41.99153 -40.49865 -38.88180 -35.66839 -35.23005 -34.17249 -33.36874 -31.99218 -29.64418 -27.89986 -27.50106 -26.19750 -25.11721 -24.26153 -23.42353 -21.92681 -20.95599 -20.04243 -19.69725 -19.63364 -19.33827 -18.39825 -17.80055 -17.10697 -16.78569 -16.72188 -16.41354 -16.04424 -15.77162 -15.67567 -15.55869 -15.42785 -15.22856 -15.16095 -15.10257 -14.93130 -14.91314 -14.88818 -14.46237 -13.96309 -13.66537 -13.54167 -13.00568 -12.90426 -12.80923 -12.66004 -12.48120 -11.99539 -11.91281 -11.62738 -11.54171 -11.49138 -11.35541 -11.15044 -10.98246 -10.78566 -10.72066 -10.22235 -9.03981 -8.22748 -5.19684 -0.77079 -0.47838 1.23898 1.51861 1.65626 1.72113 1.85468 1.88042 2.32116 2.33984 2.74499 2.77272 3.20476 3.27185 3.40060 3.50925 3.54128 3.62495 3.71653 3.76246 3.89230 4.20360 4.23572 4.31233 4.36336 4.41844 4.56846 4.63678 4.67639 4.86078 4.90781 4.98560 5.08894 5.12277 5.18979 5.22691 5.38557 5.57367 5.70796 5.76712 6.28675 6.32160 6.61692 6.90616 7.16873 8.07011 8.19371 9.27124 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.002819 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.431935 B = 9930.531678 C =11627.477281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.178 3.822 5 H 0.059 0.941 6 C 0.119 3.881 7 N -0.697 5.697 8 C 0.555 3.445 9 O -0.565 6.565 10 C -0.092 4.092 11 C -0.094 4.094 12 C 0.114 3.886 13 N -0.444 5.444 14 C 0.021 3.979 15 C 0.530 3.470 16 F -0.170 7.170 17 F -0.167 7.167 18 F -0.168 7.168 19 C -0.072 4.072 20 N -0.739 5.739 21 C -0.303 4.303 22 H 0.071 0.929 23 C -0.097 4.097 24 N -0.979 5.979 25 Si 1.114 2.886 26 H -0.304 1.304 27 H -0.275 1.275 28 H -0.287 1.287 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.413 0.587 39 H 0.170 0.830 40 H 0.213 0.787 41 H 0.161 0.839 42 H 0.359 0.641 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.575 7.321 8.035 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.199 4.199 4 C 0.069 3.931 5 H 0.077 0.923 6 C -0.005 4.005 7 N -0.348 5.348 8 C 0.342 3.658 9 O -0.445 6.445 10 C -0.103 4.103 11 C -0.114 4.114 12 C -0.044 4.044 13 N -0.153 5.153 14 C -0.117 4.117 15 C 0.475 3.525 16 F -0.151 7.151 17 F -0.148 7.148 18 F -0.149 7.149 19 C -0.093 4.093 20 N -0.381 5.381 21 C -0.435 4.435 22 H 0.089 0.911 23 C -0.289 4.289 24 N -0.627 5.627 25 Si 0.941 3.059 26 H -0.231 1.231 27 H -0.201 1.201 28 H -0.214 1.214 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.251 0.749 39 H 0.187 0.813 40 H 0.230 0.770 41 H 0.178 0.822 42 H 0.191 0.809 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.211 6.195 8.583 14.708 hybrid contribution 0.869 0.984 -1.212 1.787 sum 11.080 7.180 7.371 15.121 Atomic orbital electron populations 1.21720 0.95441 1.01704 1.00248 1.21625 0.96391 0.96412 0.98374 1.21861 1.00996 0.94838 1.02248 1.20621 0.89785 0.85753 0.96926 0.92263 1.21769 0.94660 0.95923 0.88186 1.45862 1.06112 1.52093 1.30759 1.18221 0.82776 0.80460 0.84383 1.90762 1.56085 1.49769 1.47893 1.20314 0.94091 0.99475 0.96466 1.22950 1.02425 0.93106 0.92922 1.23421 0.89957 0.94723 0.96346 1.67123 1.04559 1.17075 1.26574 1.20869 0.93519 1.01319 0.95993 1.17681 0.86055 0.74451 0.74308 1.93240 1.90256 1.59549 1.72087 1.93226 1.95496 1.42977 1.83103 1.93233 1.81012 1.96126 1.44574 1.21927 0.96480 0.94998 0.95870 1.42600 1.17517 1.03471 1.74472 1.20177 0.94202 0.94753 1.34333 0.91095 1.26687 1.07850 0.92078 1.02300 1.71007 1.11600 1.34236 1.45893 0.82767 0.72026 0.74863 0.76208 1.23051 1.20118 1.21372 0.93437 0.93203 0.93304 0.93268 0.92133 0.92169 0.92125 0.92673 0.89293 0.74915 0.81303 0.77035 0.82185 0.80924 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 8.26 71.98 0.59 -3.76 16 2 C -0.11 -3.19 2.69 -10.80 -0.03 -3.22 16 3 C -0.14 -3.26 8.84 71.98 0.64 -2.62 16 4 C 0.18 5.70 2.18 44.99 0.10 5.80 16 5 H 0.06 1.90 8.08 -2.38 -0.02 1.89 16 6 C 0.12 3.44 4.73 86.38 0.41 3.85 16 7 N -0.70 -19.52 5.35 -465.67 -2.49 -22.01 16 8 C 0.56 16.16 7.80 86.88 0.68 16.84 16 9 O -0.56 -19.63 16.45 -3.78 -0.06 -19.69 16 10 C -0.09 -2.26 5.91 -19.88 -0.12 -2.38 16 11 C -0.09 -1.86 9.62 22.63 0.22 -1.64 16 12 C 0.11 2.07 11.17 84.67 0.95 3.02 16 13 N -0.44 -10.12 9.93 -184.04 -1.83 -11.94 16 14 C 0.02 0.49 6.29 42.55 0.27 0.76 16 15 C 0.53 11.91 3.43 71.24 0.24 12.15 16 16 F -0.17 -3.78 17.30 44.97 0.78 -3.00 16 17 F -0.17 -3.94 17.03 44.97 0.77 -3.17 16 18 F -0.17 -3.71 16.44 44.97 0.74 -2.97 16 19 C -0.07 -1.72 9.00 22.63 0.20 -1.52 16 20 N -0.74 -30.28 4.44 -322.94 -1.43 -31.71 16 21 C -0.30 -14.16 7.57 84.03 0.64 -13.52 16 22 H 0.07 3.25 7.39 -2.91 -0.02 3.23 16 23 C -0.10 -4.97 5.50 84.86 0.47 -4.50 16 24 N -0.98 -55.42 13.70 21.65 0.30 -55.12 16 25 Si 1.11 47.21 29.92 68.60 2.05 49.26 16 26 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 27 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 28 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 29 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.96 6.01 -2.39 -0.01 1.95 16 32 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.06 1.29 6.55 -2.39 -0.02 1.28 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 37 H 0.09 2.33 6.71 -2.39 -0.02 2.31 16 38 H 0.41 11.20 6.28 -92.71 -0.58 10.62 16 39 H 0.17 2.93 6.54 -2.91 -0.02 2.91 16 40 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.16 3.75 7.28 -2.91 -0.02 3.73 16 42 H 0.36 16.13 6.63 -92.71 -0.61 15.51 16 43 H 0.24 13.78 6.77 -92.71 -0.63 13.15 16 Total: -1.00 -61.49 370.02 4.10 -57.39 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: 0.03 Total: 33.72 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.25 Total: 9.25 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -5.45 Total: -120.79 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.06 Total: -19.69 kcal Atomic # 9 Polarization: -11.42 SS G_CDS: 2.28 Total: -9.14 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.05 Total: 49.26 kcal Total: -61.49 4.10 -57.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698976982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.730 kcal (2) G-P(sol) polarization free energy of solvation -61.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds