Wall clock time and date at job start Wed Apr 1 2020 03:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46590 * 2 1 4 4 H 1.08998 * 109.46991 * 304.99784 * 3 2 1 5 5 S 1.81395 * 109.47456 * 64.99935 * 3 2 1 6 6 C 1.81396 * 103.00219 * 184.99680 * 5 3 2 7 7 C 1.50705 * 109.46715 * 184.99971 * 3 2 1 8 8 O 1.21277 * 120.00036 * 329.99499 * 7 3 2 9 9 N 1.34783 * 119.99882 * 149.99887 * 7 3 2 10 10 C 1.46494 * 120.00239 * 179.97438 * 9 7 3 11 11 C 1.52996 * 109.47237 * 180.02562 * 10 9 7 12 12 O 1.42895 * 113.38379 * 51.91843 * 11 10 9 13 13 C 1.53517 * 114.16834 * 185.00037 * 11 10 9 14 14 N 1.47479 * 87.99753 * 139.69722 * 13 11 10 15 15 C 1.46893 * 111.00130 * 221.26429 * 14 13 11 16 16 C 1.50699 * 109.47365 * 170.00095 * 15 14 13 17 17 O 1.21298 * 119.99843 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00361 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99875 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00336 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99735 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99791 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00065 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47083 * 59.99832 * 23 21 19 25 25 H 1.48500 * 109.47080 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46766 * 299.99986 * 23 21 19 27 27 C 1.47486 * 87.83624 * 332.95820 * 14 13 11 28 28 H 1.09003 * 109.47520 * 299.99946 * 1 2 3 29 29 H 1.08997 * 109.47263 * 60.00195 * 1 2 3 30 30 H 1.09006 * 109.46734 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47218 * 240.00112 * 2 1 3 32 32 H 1.08998 * 109.47414 * 119.99035 * 2 1 3 33 33 H 1.09014 * 109.47021 * 60.00054 * 6 5 3 34 34 H 1.08996 * 109.47400 * 179.97438 * 6 5 3 35 35 H 1.08999 * 109.47749 * 300.00375 * 6 5 3 36 36 H 0.97003 * 119.99748 * 359.97438 * 9 7 3 37 37 H 1.08997 * 109.47137 * 59.99546 * 10 9 7 38 38 H 1.09004 * 109.46597 * 300.00374 * 10 9 7 39 39 H 0.96692 * 114.00048 * 313.07846 * 12 11 10 40 40 H 1.09002 * 113.47888 * 24.90080 * 13 11 10 41 41 H 1.09003 * 113.47419 * 254.49414 * 13 11 10 42 42 H 1.08996 * 109.47219 * 289.99944 * 15 14 13 43 43 H 1.09003 * 109.47111 * 50.00095 * 15 14 13 44 44 H 0.96998 * 120.00051 * 0.02562 * 18 16 15 45 45 H 0.97008 * 119.99766 * 179.97438 * 22 21 19 46 46 H 1.09001 * 113.47573 * 141.77409 * 27 14 13 47 47 H 1.08996 * 113.47515 * 272.18523 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 -0.8418 5 16 1.5600 2.2536 1.5499 6 6 2.1075 3.9650 1.3016 7 6 3.5418 1.4444 -0.1238 8 8 4.1883 0.5208 0.3231 9 7 4.1667 2.4726 -0.7313 10 6 5.6267 2.4748 -0.8512 11 6 6.0771 3.7453 -1.5749 12 8 5.5468 4.9423 -1.0024 13 6 7.5832 3.8018 -1.8671 14 7 7.2535 4.3781 -3.1840 15 6 8.1021 3.8046 -4.2370 16 6 7.5809 4.2251 -5.5869 17 8 6.5987 4.9327 -5.6643 18 7 8.2054 3.8143 -6.7084 19 6 7.7308 4.1966 -7.9365 20 1 6.8563 4.8266 -8.0054 21 6 8.3743 3.7725 -9.0927 22 7 9.4375 3.0047 -9.0089 23 14 7.7282 4.2939 -10.7661 24 1 7.7507 5.7753 -10.8657 25 1 8.5850 3.7126 -11.8306 26 1 6.3349 3.8077 -10.9321 27 6 5.9598 3.6742 -3.1058 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6002 4.3865 0.4336 34 1 1.8662 4.5557 2.1853 35 1 3.1848 3.9816 1.1362 36 1 3.6496 3.2112 -1.0891 37 1 5.9459 1.6005 -1.4184 38 1 6.0729 2.4456 0.1429 39 1 4.5982 4.9040 -0.8194 40 1 8.0509 2.8191 -1.9279 41 1 8.1263 4.4875 -1.2166 42 1 9.1244 4.1622 -4.1147 43 1 8.0864 2.7171 -4.1641 44 1 8.9901 3.2475 -6.6466 45 1 9.8866 2.7083 -9.8161 46 1 5.1263 4.2522 -3.5048 47 1 5.9941 2.6579 -3.4981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699912566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:31 Heat of formation + Delta-G solvation = -80.240962 kcal Electronic energy + Delta-G solvation = -28210.940309 eV Core-core repulsion = 24135.536355 eV Total energy + Delta-G solvation = -4075.403954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97662 -39.91185 -37.99764 -36.07669 -34.97025 -34.63754 -33.92780 -31.35502 -30.73318 -29.58851 -28.66639 -27.04304 -26.04993 -24.92744 -22.94949 -22.18223 -21.05545 -20.13684 -19.28805 -18.36802 -17.87485 -17.24302 -16.77106 -16.50311 -15.88582 -15.68803 -15.58063 -15.36753 -15.14577 -14.69363 -14.35287 -14.23857 -14.14796 -13.88693 -13.73753 -13.54069 -13.33545 -13.17261 -13.12692 -12.62676 -12.46180 -12.22055 -12.10138 -11.91909 -11.65503 -11.53650 -11.43864 -11.36864 -11.05778 -10.81148 -10.64566 -10.47406 -10.25879 -10.20913 -10.02058 -9.57926 -9.53021 -8.79997 -8.31181 -8.16791 -8.00709 -6.45434 -3.86536 0.88299 1.80162 2.44627 2.63599 3.16879 3.23011 3.27110 3.58298 3.83939 3.91981 3.98449 4.10342 4.17937 4.22661 4.46711 4.56098 4.64822 4.66644 4.78620 4.91551 5.00274 5.02257 5.16825 5.20186 5.24496 5.30552 5.34784 5.37917 5.54984 5.59461 5.61509 5.69751 5.70200 5.74176 5.83919 5.91264 6.02176 6.19053 6.47886 6.87232 7.06961 7.30143 7.51118 7.69969 8.01065 8.56959 9.13704 9.49452 10.01053 10.72176 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.002106 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.726051 B =13293.646889 C =14082.035100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.092 4.092 3 C -0.083 4.083 4 H 0.108 0.892 5 S -0.204 6.204 6 C -0.141 4.141 7 C 0.520 3.480 8 O -0.517 6.517 9 N -0.730 5.730 10 C 0.105 3.895 11 C 0.085 3.915 12 O -0.516 6.516 13 C 0.013 3.987 14 N -0.429 5.429 15 C 0.006 3.994 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.008 4.008 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.397 0.603 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.368 0.632 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.095 0.905 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.147 -4.095 20.520 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.131 4.131 3 C -0.215 4.215 4 H 0.126 0.874 5 S 0.022 5.978 6 C -0.310 4.310 7 C 0.303 3.697 8 O -0.392 6.392 9 N -0.384 5.384 10 C -0.019 4.019 11 C 0.043 3.957 12 O -0.320 6.320 13 C -0.117 4.117 14 N -0.151 5.151 15 C -0.126 4.126 16 C 0.228 3.772 17 O -0.463 6.463 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.199 1.199 27 C -0.137 4.137 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.231 0.769 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.215 0.785 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.114 0.886 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.028 -3.869 21.310 25.275 hybrid contribution 0.230 -0.206 -2.147 2.170 sum -12.797 -4.075 19.163 23.400 Atomic orbital electron populations 1.21857 0.94236 1.02376 1.02762 1.21210 0.96599 0.90907 1.04357 1.23493 0.94824 1.03190 0.99973 0.87409 1.87112 1.78988 1.07846 1.23827 1.23636 1.04705 0.95721 1.06899 1.20401 0.89487 0.82151 0.77660 1.90732 1.66886 1.34811 1.46768 1.46001 1.08091 1.23949 1.60359 1.21985 0.79725 0.98100 1.02095 1.22648 0.96643 0.83877 0.92556 1.86669 1.26970 1.34911 1.83417 1.23993 0.93416 1.00397 0.93869 1.68902 1.02305 1.44089 0.99782 1.22546 0.99022 0.97794 0.93272 1.19620 0.86857 0.85880 0.84794 1.90524 1.28127 1.40884 1.86754 1.41861 1.27796 1.45492 1.04857 1.19640 1.12300 1.29301 0.81721 0.88004 1.25269 0.95957 0.96667 1.00019 1.69606 1.19437 1.34927 1.30295 0.85913 0.78573 0.78987 0.80725 1.19842 1.20928 1.19925 1.24468 0.96739 0.98825 0.93717 0.91394 0.92407 0.91972 0.90123 0.89822 0.89857 0.87361 0.90093 0.76862 0.89761 0.89987 0.78549 0.89861 0.88438 0.88804 0.92602 0.77474 0.91772 0.88620 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.74 37.16 0.36 -0.59 16 2 C -0.09 -0.71 4.91 -26.73 -0.13 -0.84 16 3 C -0.08 -0.62 2.62 -27.88 -0.07 -0.70 16 4 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 5 S -0.20 -1.55 20.59 -107.50 -2.21 -3.76 16 6 C -0.14 -0.71 10.54 101.05 1.07 0.36 16 7 C 0.52 5.06 6.55 -10.98 -0.07 4.99 16 8 O -0.52 -7.02 16.28 5.56 0.09 -6.93 16 9 N -0.73 -5.75 4.67 -60.30 -0.28 -6.03 16 10 C 0.11 0.97 5.36 -4.05 -0.02 0.95 16 11 C 0.09 0.92 1.65 -89.99 -0.15 0.77 16 12 O -0.52 -5.64 13.56 -35.23 -0.48 -6.12 16 13 C 0.01 0.15 7.13 -7.54 -0.05 0.10 16 14 N -0.43 -7.03 6.06 -245.81 -1.49 -8.52 16 15 C 0.01 0.10 5.31 -4.98 -0.03 0.07 16 16 C 0.44 10.42 7.62 -10.99 -0.08 10.34 16 17 O -0.58 -15.64 15.34 5.54 0.08 -15.55 16 18 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 23 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C -0.01 -0.12 6.14 -7.44 -0.05 -0.16 16 28 H 0.07 0.44 7.14 -51.93 -0.37 0.07 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.76 8.02 -51.93 -0.42 0.35 16 33 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 34 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.42 7.36 -51.92 -0.38 0.03 16 36 H 0.40 2.24 7.25 -40.82 -0.30 1.94 16 37 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.37 2.49 7.51 45.56 0.34 2.84 16 40 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16 41 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.06 0.85 7.56 -51.93 -0.39 0.46 16 44 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.10 1.53 8.13 -51.93 -0.42 1.11 16 47 H 0.07 1.02 7.57 -51.93 -0.39 0.63 16 LS Contribution 401.39 15.07 6.05 6.05 Total: -1.00 -35.07 401.39 -8.85 -43.92 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.79 Total: 11.65 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 0.53 Total: 7.32 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -1.11 Total: -52.49 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.30 Total: -28.60 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.07 -8.85 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699912566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.323 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds