Wall clock time and date at job start Wed Apr 1 2020 03:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46590 * 2 1 4 4 H 1.08998 * 109.46991 * 304.99784 * 3 2 1 5 5 S 1.81395 * 109.47456 * 64.99935 * 3 2 1 6 6 C 1.81396 * 103.00219 * 184.99680 * 5 3 2 7 7 C 1.50705 * 109.46715 * 184.99971 * 3 2 1 8 8 O 1.21277 * 120.00036 * 329.99499 * 7 3 2 9 9 N 1.34783 * 119.99882 * 149.99887 * 7 3 2 10 10 C 1.46494 * 120.00239 * 179.97438 * 9 7 3 11 11 C 1.52996 * 109.47237 * 180.02562 * 10 9 7 12 12 O 1.42895 * 113.38379 * 51.91843 * 11 10 9 13 13 C 1.53517 * 114.16834 * 185.00037 * 11 10 9 14 14 N 1.47479 * 87.99753 * 139.69722 * 13 11 10 15 15 C 1.46893 * 111.00130 * 221.26429 * 14 13 11 16 16 C 1.50699 * 109.47365 * 170.00095 * 15 14 13 17 17 O 1.21298 * 119.99843 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00361 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99875 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00336 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99735 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99791 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00065 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47083 * 59.99832 * 23 21 19 25 25 H 1.48500 * 109.47080 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46766 * 299.99986 * 23 21 19 27 27 C 1.47486 * 87.83624 * 332.95820 * 14 13 11 28 28 H 1.09003 * 109.47520 * 299.99946 * 1 2 3 29 29 H 1.08997 * 109.47263 * 60.00195 * 1 2 3 30 30 H 1.09006 * 109.46734 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.47218 * 240.00112 * 2 1 3 32 32 H 1.08998 * 109.47414 * 119.99035 * 2 1 3 33 33 H 1.09014 * 109.47021 * 60.00054 * 6 5 3 34 34 H 1.08996 * 109.47400 * 179.97438 * 6 5 3 35 35 H 1.08999 * 109.47749 * 300.00375 * 6 5 3 36 36 H 0.97003 * 119.99748 * 359.97438 * 9 7 3 37 37 H 1.08997 * 109.47137 * 59.99546 * 10 9 7 38 38 H 1.09004 * 109.46597 * 300.00374 * 10 9 7 39 39 H 0.96692 * 114.00048 * 313.07846 * 12 11 10 40 40 H 1.09002 * 113.47888 * 24.90080 * 13 11 10 41 41 H 1.09003 * 113.47419 * 254.49414 * 13 11 10 42 42 H 1.08996 * 109.47219 * 289.99944 * 15 14 13 43 43 H 1.09003 * 109.47111 * 50.00095 * 15 14 13 44 44 H 0.96998 * 120.00051 * 0.02562 * 18 16 15 45 45 H 0.97008 * 119.99766 * 179.97438 * 22 21 19 46 46 H 1.09001 * 113.47573 * 141.77409 * 27 14 13 47 47 H 1.08996 * 113.47515 * 272.18523 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 -0.8418 5 16 1.5600 2.2536 1.5499 6 6 2.1075 3.9650 1.3016 7 6 3.5418 1.4444 -0.1238 8 8 4.1883 0.5208 0.3231 9 7 4.1667 2.4726 -0.7313 10 6 5.6267 2.4748 -0.8512 11 6 6.0771 3.7453 -1.5749 12 8 5.5468 4.9423 -1.0024 13 6 7.5832 3.8018 -1.8671 14 7 7.2535 4.3781 -3.1840 15 6 8.1021 3.8046 -4.2370 16 6 7.5809 4.2251 -5.5869 17 8 6.5987 4.9327 -5.6643 18 7 8.2054 3.8143 -6.7084 19 6 7.7308 4.1966 -7.9365 20 1 6.8563 4.8266 -8.0054 21 6 8.3743 3.7725 -9.0927 22 7 9.4375 3.0047 -9.0089 23 14 7.7282 4.2939 -10.7661 24 1 7.7507 5.7753 -10.8657 25 1 8.5850 3.7126 -11.8306 26 1 6.3349 3.8077 -10.9321 27 6 5.9598 3.6742 -3.1058 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6002 4.3865 0.4336 34 1 1.8662 4.5557 2.1853 35 1 3.1848 3.9816 1.1362 36 1 3.6496 3.2112 -1.0891 37 1 5.9459 1.6005 -1.4184 38 1 6.0729 2.4456 0.1429 39 1 4.5982 4.9040 -0.8194 40 1 8.0509 2.8191 -1.9279 41 1 8.1263 4.4875 -1.2166 42 1 9.1244 4.1622 -4.1147 43 1 8.0864 2.7171 -4.1641 44 1 8.9901 3.2475 -6.6466 45 1 9.8866 2.7083 -9.8161 46 1 5.1263 4.2522 -3.5048 47 1 5.9941 2.6579 -3.4981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699912566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:30 Heat of formation + Delta-G solvation = -110.465462 kcal Electronic energy + Delta-G solvation = -28212.250941 eV Core-core repulsion = 24135.536355 eV Total energy + Delta-G solvation = -4076.714587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.98531 -40.81636 -39.75705 -37.11124 -35.92692 -35.59264 -35.44268 -33.32845 -31.83031 -30.28606 -29.31105 -28.06325 -27.10766 -26.63223 -24.11516 -22.91148 -21.78336 -21.09788 -21.03173 -19.93079 -19.08921 -17.92334 -17.89345 -17.55150 -17.15427 -16.76534 -16.62359 -16.37349 -16.31868 -15.92228 -15.62657 -15.41356 -15.21728 -14.80890 -14.61695 -14.44388 -14.26417 -14.15682 -13.82157 -13.73903 -13.49713 -13.45033 -13.12144 -13.02320 -12.92340 -12.79018 -12.49785 -12.45642 -12.18938 -12.14858 -11.99159 -11.81991 -11.52011 -11.35747 -10.97277 -10.88159 -10.38220 -10.33667 -10.04441 -9.79750 -8.74559 -8.48836 -5.97842 0.30198 1.27585 1.37801 1.40019 1.50891 1.73442 1.95280 2.01826 2.26694 2.68891 2.86876 3.13403 3.18137 3.32650 3.39607 3.55992 3.62054 3.95205 4.00803 4.17458 4.24050 4.28838 4.32571 4.36292 4.38300 4.42452 4.46954 4.52774 4.58865 4.65350 4.73507 4.77813 4.87148 4.90366 5.07050 5.11041 5.16371 5.31244 5.38483 5.39847 5.83258 6.02622 6.21028 6.57327 6.61594 6.98204 7.09974 7.52915 8.08529 8.68287 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015366 B = 0.002106 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.726051 B =13293.646889 C =14082.035100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.076 4.076 4 H 0.131 0.869 5 S -0.237 6.237 6 C -0.135 4.135 7 C 0.520 3.480 8 O -0.559 6.559 9 N -0.718 5.718 10 C 0.115 3.885 11 C 0.113 3.887 12 O -0.530 6.530 13 C 0.015 3.985 14 N -0.465 5.465 15 C 0.018 3.982 16 C 0.440 3.560 17 O -0.619 6.619 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.013 4.013 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.409 0.591 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.385 0.615 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.070 0.930 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.436 -3.999 20.919 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.207 4.207 4 H 0.149 0.851 5 S -0.011 6.011 6 C -0.303 4.303 7 C 0.304 3.696 8 O -0.437 6.437 9 N -0.372 5.372 10 C -0.010 4.010 11 C 0.070 3.930 12 O -0.336 6.336 13 C -0.114 4.114 14 N -0.187 5.187 15 C -0.113 4.113 16 C 0.228 3.772 17 O -0.505 6.505 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.196 1.196 27 C -0.143 4.143 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.235 0.765 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.327 -3.758 21.723 25.760 hybrid contribution 0.300 -0.173 -2.205 2.232 sum -13.026 -3.930 19.517 23.792 Atomic orbital electron populations 1.21809 0.92931 1.02819 1.03046 1.21189 0.97671 0.90978 1.03253 1.23469 0.93162 1.03382 1.00707 0.85093 1.87274 1.79091 1.10267 1.24463 1.23717 1.04788 0.93571 1.08200 1.20776 0.90309 0.81620 0.76855 1.90715 1.67900 1.36448 1.48686 1.45892 1.07762 1.23952 1.59630 1.21825 0.80366 0.96910 1.01878 1.22314 0.95949 0.84461 0.90262 1.86637 1.28766 1.35117 1.83090 1.24106 0.94385 1.01609 0.91301 1.68876 1.03172 1.45501 1.01182 1.22434 0.99594 0.99366 0.89948 1.20701 0.85791 0.84272 0.86477 1.90490 1.29848 1.42378 1.87764 1.41940 1.28222 1.46047 1.04890 1.19603 1.12612 1.30568 0.83553 0.90397 1.26044 0.95966 0.96268 1.02982 1.69667 1.19873 1.35070 1.31453 0.84999 0.78238 0.78543 0.76637 1.19769 1.19444 1.19597 1.24495 0.95205 0.98185 0.96410 0.91702 0.91422 0.91516 0.90451 0.91754 0.87940 0.86557 0.90082 0.75377 0.90010 0.89612 0.76472 0.87306 0.87912 0.87176 0.89917 0.76989 0.91255 0.91116 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.74 71.98 0.70 -0.97 16 2 C -0.09 -1.38 4.91 30.60 0.15 -1.23 16 3 C -0.08 -1.05 2.62 29.85 0.08 -0.97 16 4 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 5 S -0.24 -3.32 20.59 -56.49 -1.16 -4.49 16 6 C -0.13 -1.05 10.54 113.37 1.20 0.15 16 7 C 0.52 9.52 6.55 87.66 0.57 10.10 16 8 O -0.56 -14.98 16.28 -3.02 -0.05 -15.03 16 9 N -0.72 -9.99 4.67 -463.07 -2.16 -12.15 16 10 C 0.11 1.88 5.36 86.38 0.46 2.34 16 11 C 0.11 2.21 1.65 -10.38 -0.02 2.19 16 12 O -0.53 -10.45 13.56 -148.98 -2.02 -12.47 16 13 C 0.01 0.32 7.13 83.58 0.60 0.91 16 14 N -0.46 -14.66 6.06 -931.94 -5.65 -20.31 16 15 C 0.02 0.61 5.31 85.56 0.45 1.07 16 16 C 0.44 20.88 7.62 87.66 0.67 21.54 16 17 O -0.62 -34.21 15.34 -3.08 -0.05 -34.26 16 18 N -0.57 -29.34 5.29 -306.98 -1.62 -30.96 16 19 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.42 13.05 21.66 0.28 -49.13 16 23 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 C -0.01 -0.37 6.14 83.64 0.51 0.14 16 28 H 0.06 0.78 7.14 -2.39 -0.02 0.76 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.21 8.02 -2.39 -0.02 1.19 16 33 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.64 7.36 -2.39 -0.02 0.62 16 36 H 0.41 3.68 7.25 -92.71 -0.67 3.01 16 37 H 0.08 1.45 8.01 -2.39 -0.02 1.43 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.39 4.28 7.51 -74.06 -0.56 3.73 16 40 H 0.11 1.80 7.73 -2.39 -0.02 1.78 16 41 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.08 2.34 7.56 -2.39 -0.02 2.32 16 44 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 45 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 46 H 0.07 2.28 8.13 -2.39 -0.02 2.26 16 47 H 0.08 2.03 7.57 -2.39 -0.02 2.02 16 Total: -1.00 -77.25 401.39 -4.70 -81.95 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.95 Total: 35.17 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 6.66 Total: 16.98 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -9.15 Total: -112.56 kcal Atomic # 8 Polarization: -59.64 SS G_CDS: -2.12 Total: -61.76 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -1.16 Total: -4.49 kcal Total: -77.25 -4.70 -81.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699912566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.519 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds