Wall clock time and date at job start Wed Apr 1 2020 03:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47377 * 2 1 4 4 N 1.46502 * 109.47287 * 179.97438 * 3 2 1 5 5 C 1.36932 * 119.99801 * 264.11054 * 4 3 2 6 6 H 1.08008 * 120.00168 * 188.01241 * 5 4 3 7 7 C 1.38812 * 120.00398 * 8.02096 * 5 4 3 8 8 N 1.31619 * 119.99710 * 25.64232 * 7 5 4 9 9 Si 1.86794 * 120.00002 * 205.64545 * 7 5 4 10 10 H 1.48500 * 109.47465 * 84.98389 * 9 7 5 11 11 H 1.48501 * 109.46968 * 204.98374 * 9 7 5 12 12 H 1.48503 * 109.47328 * 324.98192 * 9 7 5 13 13 C 1.46504 * 120.00135 * 84.11308 * 4 3 2 14 14 C 1.52995 * 109.47233 * 270.00149 * 13 4 3 15 15 N 1.46494 * 109.47174 * 179.97438 * 14 13 4 16 16 C 1.34778 * 120.00043 * 179.97438 * 15 14 13 17 17 O 1.21514 * 120.00112 * 0.02562 * 16 15 14 18 18 C 1.48166 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.32751 * 119.72501 * 359.97438 * 18 16 15 20 20 C 1.31489 * 121.64358 * 180.02562 * 19 18 16 21 21 C 1.38598 * 120.90464 * 0.03296 * 20 19 18 22 22 C 1.38592 * 119.35143 * 359.66994 * 21 20 19 23 23 C 1.38630 * 118.48173 * 0.58972 * 22 21 20 24 24 C 1.50704 * 120.46743 * 179.71174 * 23 22 21 25 25 F 1.39901 * 109.47104 * 359.72044 * 24 23 22 26 26 F 1.39903 * 109.47263 * 239.72167 * 24 23 22 27 27 F 1.39898 * 109.47312 * 119.72167 * 24 23 22 28 28 H 1.09000 * 109.47391 * 300.00255 * 1 2 3 29 29 H 1.09003 * 109.46832 * 60.00360 * 1 2 3 30 30 H 1.09006 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47391 * 239.99744 * 2 1 3 32 32 H 1.09001 * 109.47105 * 120.00104 * 2 1 3 33 33 H 1.09000 * 109.47069 * 59.99547 * 3 2 1 34 34 H 1.09003 * 109.46845 * 299.99632 * 3 2 1 35 35 H 0.96998 * 119.99420 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.47113 * 149.99763 * 13 4 3 37 37 H 1.09001 * 109.46573 * 29.99949 * 13 4 3 38 38 H 1.09002 * 109.46917 * 59.99570 * 14 13 4 39 39 H 1.08996 * 109.46984 * 300.00146 * 14 13 4 40 40 H 0.97005 * 119.99970 * 0.02562 * 15 14 13 41 41 H 1.08004 * 119.54930 * 180.02562 * 20 19 18 42 42 H 1.08000 * 120.32586 * 179.97438 * 21 20 19 43 43 H 1.07994 * 120.75702 * 180.32328 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.5643 1.1805 6 1 5.2613 1.6944 1.1722 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2163 2.3619 3.8957 10 1 3.8295 3.7957 3.8913 11 1 3.6882 1.7105 5.1213 12 1 5.6968 2.2486 3.8736 13 6 4.2381 1.3121 -1.2611 14 6 4.4932 -0.1681 -1.5522 15 7 5.2257 -0.2984 -2.8142 16 6 5.5632 -1.5194 -3.2745 17 8 5.2594 -2.5121 -2.6430 18 6 6.3045 -1.6512 -4.5505 19 7 6.6331 -0.5631 -5.2363 20 6 7.2902 -0.6362 -6.3729 21 6 7.6658 -1.8616 -6.9004 22 6 7.3483 -3.0229 -6.2138 23 6 6.6502 -2.9157 -5.0209 24 6 6.2761 -4.1497 -4.2409 25 9 6.7327 -5.2856 -4.9180 26 9 4.8848 -4.2137 -4.1084 27 9 6.8633 -4.0954 -2.9723 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 1.8762 0.8554 3.3123 36 1 5.1904 1.8366 -1.1838 37 1 3.6493 1.7452 -2.0697 38 1 3.5408 -0.6926 -1.6294 39 1 5.0819 -0.6012 -0.7436 40 1 5.4685 0.4941 -3.3181 41 1 7.5406 0.2710 -6.9027 42 1 8.2049 -1.9108 -7.8349 43 1 7.6344 -3.9894 -6.6014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713551421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:05 Heat of formation + Delta-G solvation = -116.109379 kcal Electronic energy + Delta-G solvation = -30939.246411 eV Core-core repulsion = 26184.986395 eV Total energy + Delta-G solvation = -4754.260017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.02631 -47.61663 -47.33504 -41.03021 -38.97995 -36.57774 -34.62134 -33.47017 -32.46901 -31.90665 -31.27632 -28.17161 -26.55663 -25.48889 -25.10307 -23.41421 -22.72505 -20.97924 -20.76341 -19.88643 -18.81842 -18.52961 -18.30645 -17.79019 -16.93214 -16.73186 -15.70273 -15.54449 -15.38765 -14.82089 -14.58258 -14.41317 -14.29427 -14.19563 -13.90883 -13.82166 -13.69095 -13.57298 -13.43954 -13.39783 -13.24820 -12.87870 -12.61772 -12.34765 -12.10282 -11.57514 -11.31124 -11.03621 -10.84433 -10.66782 -10.60304 -10.46869 -10.37763 -9.95860 -9.95159 -9.87076 -9.84965 -9.66664 -9.21132 -8.64363 -8.32684 -6.92521 -5.76806 -3.08368 0.00672 0.46660 2.53865 2.54586 3.05165 3.41363 3.41627 3.49320 3.49440 3.58006 3.85226 3.90151 4.25229 4.35303 4.47440 4.53841 4.59104 4.76036 4.95313 5.30883 5.33591 5.37142 5.55390 5.82794 5.85375 5.91645 6.21335 6.25739 6.31251 6.55195 6.62380 6.68402 6.71047 6.85576 7.01172 7.11697 7.21623 7.30172 7.68877 7.69311 7.81146 8.13179 8.27361 8.36025 9.23325 9.84882 10.29162 11.26542 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.002765 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.329818 B =10125.164441 C =10425.985812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.590 5.590 5 C -0.257 4.257 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.087 3.913 15 N -0.694 5.694 16 C 0.547 3.453 17 O -0.514 6.514 18 C 0.142 3.858 19 N -0.455 5.455 20 C 0.128 3.872 21 C -0.158 4.158 22 C -0.035 4.035 23 C -0.189 4.189 24 C 0.523 3.477 25 F -0.187 7.187 26 F -0.159 7.159 27 F -0.159 7.159 28 H 0.051 0.949 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.021 0.979 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.003 0.997 35 H 0.253 0.747 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.406 0.594 41 H 0.174 0.826 42 H 0.153 0.847 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.314 -5.182 -21.550 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.310 5.310 5 C -0.386 4.386 6 H 0.093 0.907 7 C -0.196 4.196 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.015 3.985 14 C -0.038 4.038 15 N -0.344 5.344 16 C 0.329 3.671 17 O -0.390 6.390 18 C 0.003 3.997 19 N -0.166 5.166 20 C -0.031 4.031 21 C -0.178 4.178 22 C -0.061 4.061 23 C -0.194 4.194 24 C 0.467 3.533 25 F -0.168 7.168 26 F -0.141 7.141 27 F -0.140 7.140 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.022 0.978 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.241 0.759 41 H 0.191 0.809 42 H 0.170 0.830 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.689 -5.077 -20.483 22.822 hybrid contribution 0.704 -0.433 0.219 0.855 sum 9.393 -5.510 -20.264 23.005 Atomic orbital electron populations 1.21626 0.98577 0.99326 0.99978 1.22226 0.92922 1.00472 1.01399 1.20938 0.81495 0.94538 0.98434 1.44255 1.01926 1.83482 1.01381 1.19278 0.92281 1.43521 0.83476 0.90726 1.24723 0.97579 1.00063 0.97283 1.70167 1.17169 1.41133 1.25007 0.86371 0.78423 0.79872 0.82596 1.21603 1.21977 1.20761 1.20957 0.96521 0.91499 0.89561 1.22907 0.95995 1.02090 0.82806 1.46015 1.55980 1.07303 1.25109 1.17860 0.80454 0.85020 0.83736 1.90912 1.53994 1.36673 1.57406 1.21342 0.95024 0.88038 0.95323 1.67813 1.10960 1.30433 1.07431 1.23157 0.90948 0.98368 0.90609 1.22404 1.00988 0.92708 1.01701 1.21538 0.92196 1.00972 0.91402 1.21109 1.05276 0.94232 0.98746 1.17652 0.75926 0.81658 0.78029 1.93141 1.89107 1.54361 1.80210 1.93263 1.28645 1.96370 1.95777 1.93266 1.83738 1.96257 1.40759 0.93001 0.95094 0.94807 0.96035 0.88331 0.89186 0.97832 0.93714 0.93055 0.93750 0.91139 0.91023 0.75883 0.80888 0.82973 0.82630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.91 37.16 0.37 -2.32 16 2 C -0.13 -2.97 5.60 -26.73 -0.15 -3.12 16 3 C 0.17 4.01 4.92 -4.04 -0.02 3.99 16 4 N -0.59 -14.12 2.54 -173.24 -0.44 -14.56 16 5 C -0.26 -6.78 9.70 -15.06 -0.15 -6.93 16 6 H 0.07 1.95 7.94 -52.48 -0.42 1.53 16 7 C 0.00 0.04 4.89 -17.43 -0.09 -0.05 16 8 N -0.89 -24.37 8.62 55.49 0.48 -23.89 16 9 Si 0.90 21.38 29.62 -169.99 -5.04 16.35 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.14 2.79 5.82 -4.04 -0.02 2.76 16 14 C 0.09 1.68 5.88 -4.05 -0.02 1.65 16 15 N -0.69 -11.09 5.54 -61.15 -0.34 -11.43 16 16 C 0.55 9.19 7.62 -12.18 -0.09 9.10 16 17 O -0.51 -10.29 11.27 5.35 0.06 -10.23 16 18 C 0.14 1.90 6.73 -83.01 -0.56 1.34 16 19 N -0.46 -4.93 9.54 -9.80 -0.09 -5.03 16 20 C 0.13 0.88 11.18 -17.57 -0.20 0.68 16 21 C -0.16 -0.87 10.11 -39.32 -0.40 -1.27 16 22 C -0.04 -0.28 9.54 -39.31 -0.37 -0.65 16 23 C -0.19 -2.26 5.41 -104.09 -0.56 -2.83 16 24 C 0.52 7.36 2.78 36.01 0.10 7.46 16 25 F -0.19 -2.21 16.06 2.25 0.04 -2.17 16 26 F -0.16 -2.61 15.01 2.25 0.03 -2.58 16 27 F -0.16 -2.63 15.02 2.25 0.03 -2.60 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.47 5.98 -51.93 -0.31 0.16 16 32 H 0.10 2.60 6.33 -51.93 -0.33 2.27 16 33 H 0.09 2.35 5.85 -51.93 -0.30 2.05 16 34 H 0.00 0.08 7.98 -51.93 -0.41 -0.34 16 35 H 0.25 6.80 8.31 -40.82 -0.34 6.47 16 36 H 0.05 0.95 8.03 -51.93 -0.42 0.54 16 37 H 0.04 0.78 7.95 -51.93 -0.41 0.37 16 38 H 0.07 1.49 5.92 -51.93 -0.31 1.19 16 39 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 40 H 0.41 5.48 7.80 -40.82 -0.32 5.16 16 41 H 0.17 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 43 H 0.16 0.84 7.26 -52.49 -0.38 0.45 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -31.16 362.67 -7.25 -38.40 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.28 Total: 2.43 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -2.16 Total: 9.83 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.39 Total: -54.91 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.06 Total: -10.23 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.10 Total: -7.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.04 Total: 16.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.16 -7.25 -38.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713551421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.708 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds