Wall clock time and date at job start Wed Apr 1 2020 03:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47377 * 2 1 4 4 N 1.46502 * 109.47287 * 179.97438 * 3 2 1 5 5 C 1.36932 * 119.99801 * 264.11054 * 4 3 2 6 6 H 1.08008 * 120.00168 * 188.01241 * 5 4 3 7 7 C 1.38812 * 120.00398 * 8.02096 * 5 4 3 8 8 N 1.31619 * 119.99710 * 25.64232 * 7 5 4 9 9 Si 1.86794 * 120.00002 * 205.64545 * 7 5 4 10 10 H 1.48500 * 109.47465 * 84.98389 * 9 7 5 11 11 H 1.48501 * 109.46968 * 204.98374 * 9 7 5 12 12 H 1.48503 * 109.47328 * 324.98192 * 9 7 5 13 13 C 1.46504 * 120.00135 * 84.11308 * 4 3 2 14 14 C 1.52995 * 109.47233 * 270.00149 * 13 4 3 15 15 N 1.46494 * 109.47174 * 179.97438 * 14 13 4 16 16 C 1.34778 * 120.00043 * 179.97438 * 15 14 13 17 17 O 1.21514 * 120.00112 * 0.02562 * 16 15 14 18 18 C 1.48166 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.32751 * 119.72501 * 359.97438 * 18 16 15 20 20 C 1.31489 * 121.64358 * 180.02562 * 19 18 16 21 21 C 1.38598 * 120.90464 * 0.03296 * 20 19 18 22 22 C 1.38592 * 119.35143 * 359.66994 * 21 20 19 23 23 C 1.38630 * 118.48173 * 0.58972 * 22 21 20 24 24 C 1.50704 * 120.46743 * 179.71174 * 23 22 21 25 25 F 1.39901 * 109.47104 * 359.72044 * 24 23 22 26 26 F 1.39903 * 109.47263 * 239.72167 * 24 23 22 27 27 F 1.39898 * 109.47312 * 119.72167 * 24 23 22 28 28 H 1.09000 * 109.47391 * 300.00255 * 1 2 3 29 29 H 1.09003 * 109.46832 * 60.00360 * 1 2 3 30 30 H 1.09006 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47391 * 239.99744 * 2 1 3 32 32 H 1.09001 * 109.47105 * 120.00104 * 2 1 3 33 33 H 1.09000 * 109.47069 * 59.99547 * 3 2 1 34 34 H 1.09003 * 109.46845 * 299.99632 * 3 2 1 35 35 H 0.96998 * 119.99420 * 180.02562 * 8 7 5 36 36 H 1.08992 * 109.47113 * 149.99763 * 13 4 3 37 37 H 1.09001 * 109.46573 * 29.99949 * 13 4 3 38 38 H 1.09002 * 109.46917 * 59.99570 * 14 13 4 39 39 H 1.08996 * 109.46984 * 300.00146 * 14 13 4 40 40 H 0.97005 * 119.99970 * 0.02562 * 15 14 13 41 41 H 1.08004 * 119.54930 * 180.02562 * 20 19 18 42 42 H 1.08000 * 120.32586 * 179.97438 * 21 20 19 43 43 H 1.07994 * 120.75702 * 180.32328 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.5643 1.1805 6 1 5.2613 1.6944 1.1722 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2163 2.3619 3.8957 10 1 3.8295 3.7957 3.8913 11 1 3.6882 1.7105 5.1213 12 1 5.6968 2.2486 3.8736 13 6 4.2381 1.3121 -1.2611 14 6 4.4932 -0.1681 -1.5522 15 7 5.2257 -0.2984 -2.8142 16 6 5.5632 -1.5194 -3.2745 17 8 5.2594 -2.5121 -2.6430 18 6 6.3045 -1.6512 -4.5505 19 7 6.6331 -0.5631 -5.2363 20 6 7.2902 -0.6362 -6.3729 21 6 7.6658 -1.8616 -6.9004 22 6 7.3483 -3.0229 -6.2138 23 6 6.6502 -2.9157 -5.0209 24 6 6.2761 -4.1497 -4.2409 25 9 6.7327 -5.2856 -4.9180 26 9 4.8848 -4.2137 -4.1084 27 9 6.8633 -4.0954 -2.9723 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 1.8762 0.8554 3.3123 36 1 5.1904 1.8366 -1.1838 37 1 3.6493 1.7452 -2.0697 38 1 3.5408 -0.6926 -1.6294 39 1 5.0819 -0.6012 -0.7436 40 1 5.4685 0.4941 -3.3181 41 1 7.5406 0.2710 -6.9027 42 1 8.2049 -1.9108 -7.8349 43 1 7.6344 -3.9894 -6.6014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713551421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:04 Heat of formation + Delta-G solvation = -135.979209 kcal Electronic energy + Delta-G solvation = -30940.108032 eV Core-core repulsion = 26184.986395 eV Total energy + Delta-G solvation = -4755.121637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.12219 -48.68415 -48.52663 -41.88176 -40.16772 -38.35350 -36.08367 -34.28871 -33.74873 -33.41873 -32.87795 -29.73361 -27.55390 -27.36648 -26.08313 -24.89102 -23.65121 -22.51314 -22.18427 -21.64449 -19.83486 -19.51426 -19.43598 -18.93381 -18.65787 -17.73567 -16.96017 -16.82150 -16.48854 -16.35799 -15.86035 -15.55211 -15.51210 -15.35916 -15.26746 -14.98263 -14.92620 -14.91917 -14.73497 -14.68728 -14.36919 -14.18670 -14.05126 -13.98653 -13.42306 -13.05657 -12.97064 -12.81171 -12.65178 -12.40114 -12.18608 -11.82625 -11.71120 -11.59807 -11.47164 -11.35275 -11.10392 -10.84009 -10.56577 -10.32785 -10.08643 -8.86584 -7.79536 -5.12225 -0.78081 -0.15341 1.49797 1.52251 1.56189 1.56817 1.58811 1.88831 2.52378 2.56147 2.63553 2.94359 3.02513 3.28497 3.38077 3.52620 3.76499 3.77874 3.85782 4.15045 4.19606 4.28105 4.32942 4.51863 4.63215 4.67762 4.73420 4.84852 4.87357 4.95687 5.03880 5.09005 5.24492 5.34669 5.38756 5.44630 5.52196 5.65224 5.87435 6.19052 6.26995 6.36558 6.57669 7.03718 7.22264 7.91780 8.31297 9.21422 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.002765 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.329818 B =10125.164441 C =10425.985812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.175 3.825 4 N -0.606 5.606 5 C -0.266 4.266 6 H 0.073 0.927 7 C -0.046 4.046 8 N -0.908 5.908 9 Si 0.955 3.045 10 H -0.286 1.286 11 H -0.301 1.301 12 H -0.278 1.278 13 C 0.147 3.853 14 C 0.110 3.890 15 N -0.685 5.685 16 C 0.541 3.459 17 O -0.557 6.557 18 C 0.114 3.886 19 N -0.470 5.470 20 C 0.128 3.872 21 C -0.123 4.123 22 C -0.037 4.037 23 C -0.201 4.201 24 C 0.515 3.485 25 F -0.174 7.174 26 F -0.180 7.180 27 F -0.181 7.181 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.021 0.979 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.026 0.974 35 H 0.246 0.754 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.034 0.966 40 H 0.420 0.580 41 H 0.217 0.783 42 H 0.205 0.795 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.006 -4.066 -25.366 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C 0.050 3.950 4 N -0.327 5.327 5 C -0.396 4.396 6 H 0.090 0.910 7 C -0.242 4.242 8 N -0.554 5.554 9 Si 0.785 3.215 10 H -0.213 1.213 11 H -0.228 1.228 12 H -0.203 1.203 13 C 0.019 3.981 14 C -0.016 4.016 15 N -0.337 5.337 16 C 0.325 3.675 17 O -0.436 6.436 18 C -0.024 4.024 19 N -0.181 5.181 20 C -0.031 4.031 21 C -0.142 4.142 22 C -0.062 4.062 23 C -0.206 4.206 24 C 0.460 3.540 25 F -0.156 7.156 26 F -0.161 7.161 27 F -0.162 7.162 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.258 0.742 41 H 0.234 0.766 42 H 0.222 0.778 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 10.406 -3.941 -24.344 26.767 hybrid contribution 0.293 -0.814 1.203 1.482 sum 10.700 -4.755 -23.141 25.934 Atomic orbital electron populations 1.21527 0.96087 1.00330 1.00685 1.22021 0.95114 0.99648 0.99278 1.20824 0.81527 0.94641 0.98001 1.44427 1.02356 1.83784 1.02104 1.19500 0.92404 1.43012 0.84660 0.90952 1.25363 0.98369 1.00872 0.99571 1.70340 1.18153 1.41972 1.24969 0.85461 0.77842 0.78700 0.79499 1.21317 1.22790 1.20304 1.21057 0.97085 0.91363 0.88558 1.22297 0.94559 1.01390 0.83351 1.45735 1.55794 1.08133 1.24033 1.18489 0.79885 0.84196 0.84896 1.90879 1.55629 1.37913 1.59141 1.20667 0.97473 0.89522 0.94763 1.67761 1.11947 1.29391 1.09005 1.24002 0.89127 1.00853 0.89114 1.23005 0.98118 0.90852 1.02229 1.21957 0.91121 1.03360 0.89745 1.21065 1.07029 0.92257 1.00258 1.18046 0.74968 0.83274 0.77749 1.93149 1.88804 1.53954 1.79667 1.93209 1.30433 1.96584 1.95903 1.93210 1.83948 1.96467 1.42608 0.93883 0.92669 0.93695 0.96089 0.92415 0.91973 0.95563 0.94434 0.91927 0.91082 0.93389 0.94759 0.74221 0.76634 0.77792 0.80099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 9.91 71.98 0.71 -4.29 16 2 C -0.12 -5.64 5.60 30.59 0.17 -5.47 16 3 C 0.18 8.31 4.92 86.38 0.43 8.74 16 4 N -0.61 -29.43 2.54 -702.01 -1.78 -31.21 16 5 C -0.27 -14.36 9.70 84.03 0.81 -13.54 16 6 H 0.07 3.85 7.94 -2.91 -0.02 3.82 16 7 C -0.05 -2.52 4.89 84.86 0.41 -2.11 16 8 N -0.91 -51.51 8.62 21.65 0.19 -51.32 16 9 Si 0.96 44.96 29.62 68.60 2.03 46.99 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.15 5.70 5.82 86.38 0.50 6.20 16 14 C 0.11 4.43 5.88 86.38 0.51 4.94 16 15 N -0.69 -22.41 5.54 -465.68 -2.58 -24.99 16 16 C 0.54 18.88 7.62 86.88 0.66 19.54 16 17 O -0.56 -23.82 11.27 -3.76 -0.04 -23.86 16 18 C 0.11 2.99 6.73 41.89 0.28 3.27 16 19 N -0.47 -9.04 9.54 -184.91 -1.76 -10.80 16 20 C 0.13 1.13 11.18 84.83 0.95 2.07 16 21 C -0.12 -0.64 10.11 22.44 0.23 -0.41 16 22 C -0.04 -0.44 9.54 22.45 0.21 -0.22 16 23 C -0.20 -4.63 5.41 -19.52 -0.11 -4.73 16 24 C 0.51 14.89 2.78 71.24 0.20 15.09 16 25 F -0.17 -4.06 16.06 44.97 0.72 -3.33 16 26 F -0.18 -6.23 15.01 44.97 0.68 -5.56 16 27 F -0.18 -6.35 15.02 44.97 0.68 -5.67 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.02 0.95 5.98 -2.39 -0.01 0.94 16 32 H 0.06 3.19 6.33 -2.39 -0.02 3.17 16 33 H 0.06 3.32 5.85 -2.39 -0.01 3.30 16 34 H 0.03 1.11 7.98 -2.39 -0.02 1.09 16 35 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 37 H 0.07 2.39 7.95 -2.39 -0.02 2.37 16 38 H 0.05 2.14 5.92 -2.39 -0.01 2.13 16 39 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.42 11.11 7.80 -92.70 -0.72 10.38 16 41 H 0.22 -0.01 8.06 -2.91 -0.02 -0.03 16 42 H 0.21 -0.95 8.06 -2.91 -0.02 -0.97 16 43 H 0.18 1.18 7.26 -2.91 -0.02 1.15 16 Total: -1.00 -74.03 362.67 4.44 -69.59 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.34 Total: 11.08 kcal Atomic # 6 Polarization: 23.11 SS G_CDS: 5.98 Total: 29.08 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -5.94 Total: -118.32 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.04 Total: -23.86 kcal Atomic # 9 Polarization: -16.64 SS G_CDS: 2.07 Total: -14.57 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -74.03 4.44 -69.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713551421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.386 kcal (2) G-P(sol) polarization free energy of solvation -74.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds