Wall clock time and date at job start Wed Apr 1 2020 03:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46829 * 2 1 4 4 N 1.46500 * 109.47287 * 240.00246 * 2 1 3 5 5 S 1.65596 * 119.99965 * 37.02952 * 4 2 1 6 6 C 1.81407 * 104.45072 * 62.17333 * 5 4 2 7 7 O 1.42099 * 104.27814 * 178.24593 * 5 4 2 8 8 O 1.42100 * 104.27749 * 306.10458 * 5 4 2 9 9 C 1.50696 * 109.47333 * 119.99655 * 2 1 3 10 10 O 1.21274 * 120.00644 * 251.68349 * 9 2 1 11 11 N 1.34783 * 119.99705 * 71.68081 * 9 2 1 12 12 C 1.47164 * 120.70625 * 357.32669 * 11 9 2 13 13 C 1.55889 * 107.95034 * 132.41008 * 12 11 9 14 14 H 1.09003 * 112.45919 * 181.84101 * 13 12 11 15 15 C 1.54539 * 108.44443 * 307.13191 * 13 12 11 16 16 C 1.53730 * 104.95913 * 88.28589 * 15 13 12 17 17 C 1.54547 * 104.95038 * 359.97438 * 16 15 13 18 18 H 1.09000 * 112.18047 * 146.28896 * 17 16 15 19 19 C 1.47163 * 120.71080 * 177.30448 * 11 9 2 20 20 N 1.48301 * 104.35827 * 24.58034 * 17 16 15 21 21 C 1.36935 * 128.08193 * 139.08088 * 20 17 16 22 22 H 1.08008 * 119.99953 * 34.15040 * 21 20 17 23 23 C 1.38812 * 120.00157 * 214.15324 * 21 20 17 24 24 N 1.31621 * 120.00137 * 193.45914 * 23 21 20 25 25 Si 1.86795 * 120.00130 * 13.45448 * 23 21 20 26 26 H 1.48500 * 109.47463 * 272.17887 * 25 23 21 27 27 H 1.48501 * 109.46905 * 32.18298 * 25 23 21 28 28 H 1.48510 * 109.47094 * 152.17605 * 25 23 21 29 29 H 1.09006 * 109.46836 * 292.81700 * 1 2 3 30 30 H 1.09004 * 109.46618 * 52.81024 * 1 2 3 31 31 H 1.08995 * 109.46803 * 172.81192 * 1 2 3 32 32 H 1.09005 * 109.46350 * 187.24830 * 3 2 1 33 33 H 1.08995 * 109.47445 * 307.24864 * 3 2 1 34 34 H 1.08997 * 109.47376 * 67.25498 * 3 2 1 35 35 H 0.97000 * 119.99839 * 217.03152 * 4 2 1 36 36 H 1.08996 * 109.46542 * 50.95109 * 6 5 4 37 37 H 1.09001 * 109.47022 * 170.95433 * 6 5 4 38 38 H 1.08995 * 109.47171 * 290.95484 * 6 5 4 39 39 H 1.09005 * 109.74852 * 252.36479 * 12 11 9 40 40 H 1.09000 * 109.75222 * 13.09684 * 12 11 9 41 41 H 1.09000 * 110.36700 * 207.00843 * 15 13 12 42 42 H 1.09008 * 110.36410 * 329.21213 * 15 13 12 43 43 H 1.09006 * 110.42201 * 241.07046 * 16 15 13 44 44 H 1.08996 * 110.20827 * 118.82209 * 16 15 13 45 45 H 1.08994 * 109.74993 * 107.62971 * 19 11 9 46 46 H 1.09000 * 109.78895 * 346.92091 * 19 11 9 47 47 H 0.96992 * 120.00379 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 -1.1962 5 16 1.2150 -0.5237 -2.6346 6 6 1.3321 1.2460 -3.0158 7 8 1.9843 -1.2842 -3.5559 8 8 -0.1264 -0.8804 -2.3302 9 6 2.0324 -0.7103 1.2305 10 8 2.5458 -0.0777 2.1288 11 7 1.9112 -2.0488 1.3326 12 6 1.2386 -2.8250 0.2786 13 6 2.1424 -4.0465 -0.0695 14 1 1.7261 -4.6578 -0.8702 15 6 3.5621 -3.5280 -0.3921 16 6 4.2863 -3.4847 0.9632 17 6 3.2421 -3.9802 1.9892 18 1 3.6997 -4.5425 2.8032 19 6 2.4489 -2.7652 2.5001 20 7 2.3072 -4.8099 1.1911 21 6 1.7346 -6.0052 1.5351 22 1 1.4679 -6.2002 2.5635 23 6 1.4969 -6.9665 0.5623 24 7 0.7178 -7.9934 0.8283 25 14 2.2826 -6.8025 -1.1244 26 1 1.4048 -5.9878 -2.0024 27 1 3.6043 -6.1384 -0.9923 28 1 2.4636 -8.1511 -1.7194 29 1 -0.3633 0.3985 0.9473 30 1 -0.3633 0.6212 -0.8187 31 1 -0.3633 -1.0196 -0.1286 32 1 3.1223 1.4452 -0.1297 33 1 1.5747 1.9925 -0.8180 34 1 1.7865 1.9176 0.9477 35 1 2.8124 -1.2455 -1.1456 36 1 2.3716 1.5655 -2.9419 37 1 0.9681 1.4245 -4.0276 38 1 0.7271 1.8112 -2.3070 39 1 0.2679 -3.1682 0.6366 40 1 1.1066 -2.2050 -0.6081 41 1 4.0714 -4.2135 -1.0695 42 1 3.5114 -2.5310 -0.8300 43 1 4.5940 -2.4656 1.1977 44 1 5.1503 -4.1491 0.9498 45 1 1.6296 -3.1009 3.1358 46 1 3.1079 -2.1066 3.0659 47 1 0.5520 -8.6653 0.1487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713710342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:35 Heat of formation + Delta-G solvation = -30.028849 kcal Electronic energy + Delta-G solvation = -32235.579866 eV Core-core repulsion = 28162.353273 eV Total energy + Delta-G solvation = -4073.226593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.91397 -38.61618 -37.46484 -36.54753 -36.07897 -33.99433 -32.48521 -31.26051 -30.71783 -29.98296 -29.83243 -27.47168 -26.69906 -24.55435 -23.80033 -22.61160 -20.44910 -20.01432 -19.46677 -18.89444 -18.07726 -17.43957 -16.70455 -16.37040 -16.30381 -15.61466 -15.48117 -15.07541 -14.92463 -14.23934 -13.92802 -13.72466 -13.68160 -13.54024 -13.37499 -13.24541 -13.19454 -12.97482 -12.50427 -12.36101 -12.27904 -12.12188 -12.05829 -11.94668 -11.84367 -11.75681 -11.36027 -11.30730 -11.21819 -11.06161 -10.86087 -10.61929 -10.36493 -9.98187 -9.96575 -9.88010 -9.59152 -9.20672 -8.73397 -8.35479 -6.97393 -6.03083 -3.48171 -0.02327 2.20504 2.85909 3.15374 3.27311 3.42661 3.45027 3.54669 3.88580 4.19990 4.39412 4.45166 4.53320 4.63130 4.68481 4.74915 4.89941 5.15459 5.19711 5.27600 5.32242 5.35914 5.47224 5.50799 5.52388 5.56733 5.60255 5.76495 5.81110 5.93269 5.97369 6.10526 6.12454 6.19915 6.22257 6.32202 6.35363 6.39748 6.57934 6.69064 6.76631 6.91267 7.67939 7.70714 8.26313 8.29247 8.71174 9.57138 10.17594 11.12331 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013627 B = 0.005485 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.290555 B = 5103.661911 C = 6190.281547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.160 3.840 3 C -0.162 4.162 4 N -1.109 6.109 5 S 2.601 3.399 6 C -0.679 4.679 7 O -0.952 6.952 8 O -0.943 6.943 9 C 0.517 3.483 10 O -0.547 6.547 11 N -0.578 5.578 12 C 0.074 3.926 13 C 0.115 3.885 14 H 0.089 0.911 15 C -0.130 4.130 16 C -0.126 4.126 17 C 0.135 3.865 18 H 0.089 0.911 19 C 0.101 3.899 20 N -0.593 5.593 21 C -0.243 4.243 22 H 0.088 0.912 23 C 0.033 3.967 24 N -0.906 5.906 25 Si 0.877 3.123 26 H -0.282 1.282 27 H -0.260 1.260 28 H -0.301 1.301 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.421 0.579 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 20.642 -5.722 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.068 3.932 3 C -0.220 4.220 4 N -0.875 5.875 5 S 2.692 3.308 6 C -0.828 4.828 7 O -0.942 6.942 8 O -0.932 6.932 9 C 0.302 3.698 10 O -0.425 6.425 11 N -0.309 5.309 12 C -0.052 4.052 13 C 0.008 3.992 14 H 0.106 0.894 15 C -0.169 4.169 16 C -0.165 4.165 17 C 0.028 3.972 18 H 0.107 0.893 19 C -0.022 4.022 20 N -0.316 5.316 21 C -0.370 4.370 22 H 0.106 0.894 23 C -0.167 4.167 24 N -0.548 5.548 25 Si 0.708 3.292 26 H -0.210 1.210 27 H -0.185 1.185 28 H -0.229 1.229 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.263 0.737 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.189 20.054 -5.736 20.972 hybrid contribution 0.851 0.359 -0.976 1.344 sum 3.040 20.412 -6.712 21.702 Atomic orbital electron populations 1.22675 0.90734 1.06395 1.03780 1.20460 0.96177 0.92758 0.83780 1.22371 1.02610 0.93176 1.03888 1.56272 1.45059 1.62327 1.23826 1.05263 0.74853 0.77585 0.73065 1.30780 1.12068 1.27729 1.12258 1.93646 1.71270 1.67290 1.62009 1.93695 1.35906 1.80975 1.82672 1.20127 0.79558 0.82359 0.87751 1.90670 1.45313 1.65548 1.40969 1.48036 1.55281 1.05379 1.22201 1.23432 0.96776 0.94292 0.90650 1.22715 0.93135 0.91378 0.91986 0.89390 1.22589 0.97464 0.99021 0.97832 1.22392 0.98405 1.00112 0.95599 1.22065 0.89575 0.90717 0.94891 0.89262 1.22405 0.98566 0.94268 0.87009 1.45398 1.50187 1.21287 1.14718 1.18558 1.34032 0.88098 0.96329 0.89404 1.25366 0.98007 0.94925 0.98413 1.69746 1.37182 1.13113 1.34769 0.86969 0.81339 0.76067 0.84801 1.20997 1.18485 1.22857 0.90302 0.90726 0.88433 0.91032 0.91612 0.89568 0.73696 0.84917 0.85217 0.84821 0.90548 0.89231 0.91293 0.93237 0.92241 0.91870 0.91261 0.90002 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 6.72 37.16 0.25 -1.68 16 2 C 0.16 1.81 0.75 -132.97 -0.10 1.71 16 3 C -0.16 -1.39 7.88 37.16 0.29 -1.10 16 4 N -1.11 -12.44 3.00 -0.40 0.00 -12.44 16 5 S 2.60 27.76 5.38 -107.50 -0.58 27.18 16 6 C -0.68 -3.82 9.32 101.05 0.94 -2.88 16 7 O -0.95 -13.57 18.08 -57.54 -1.04 -14.61 16 8 O -0.94 -12.37 13.71 -57.54 -0.79 -13.16 16 9 C 0.52 7.69 6.52 -10.98 -0.07 7.61 16 10 O -0.55 -9.26 15.31 5.56 0.09 -9.17 16 11 N -0.58 -9.42 2.29 -170.30 -0.39 -9.81 16 12 C 0.07 1.30 4.39 -2.14 -0.01 1.29 16 13 C 0.12 2.35 2.93 -64.59 -0.19 2.17 16 14 H 0.09 2.01 3.80 -51.93 -0.20 1.81 16 15 C -0.13 -2.28 5.89 -25.54 -0.15 -2.43 16 16 C -0.13 -2.09 6.18 -25.54 -0.16 -2.25 16 17 C 0.14 2.50 4.27 -65.70 -0.28 2.22 16 18 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 19 C 0.10 1.72 5.91 -3.25 -0.02 1.70 16 20 N -0.59 -13.31 2.37 -151.46 -0.36 -13.67 16 21 C -0.24 -6.52 10.74 -15.06 -0.16 -6.69 16 22 H 0.09 2.54 8.06 -52.48 -0.42 2.11 16 23 C 0.03 0.94 5.49 -17.43 -0.10 0.84 16 24 N -0.91 -27.22 13.97 55.49 0.78 -26.45 16 25 Si 0.88 21.85 24.72 -169.99 -4.20 17.64 16 26 H -0.28 -6.91 6.51 56.52 0.37 -6.54 16 27 H -0.26 -6.16 5.50 56.52 0.31 -5.85 16 28 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 29 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.07 0.63 5.85 -51.93 -0.30 0.33 16 31 H 0.10 1.27 5.22 -51.93 -0.27 1.00 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.36 4.93 -51.93 -0.26 0.11 16 34 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 35 H 0.42 5.00 4.99 -34.47 -0.17 4.82 16 36 H 0.13 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.13 0.54 5.65 -51.93 -0.29 0.25 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.09 1.40 2.80 -51.93 -0.15 1.26 16 41 H 0.07 1.27 6.69 -51.93 -0.35 0.92 16 42 H 0.05 0.74 4.59 -51.92 -0.24 0.50 16 43 H 0.06 0.90 7.86 -51.93 -0.41 0.49 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.08 1.32 7.14 -51.93 -0.37 0.95 16 47 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 343.64 15.07 5.18 5.18 Total: -1.00 -34.25 343.64 -7.54 -41.78 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.47 Total: 7.00 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 0.25 Total: 0.51 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.03 Total: -62.36 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.74 Total: -36.94 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.20 Total: 17.64 kcal Atomic # 16 Polarization: 27.76 SS G_CDS: -0.58 Total: 27.18 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.25 -7.54 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713710342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.756 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds