Wall clock time and date at job start Wed Apr 1 2020 03:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46829 * 2 1 4 4 N 1.46500 * 109.47287 * 240.00246 * 2 1 3 5 5 S 1.65596 * 119.99965 * 37.02952 * 4 2 1 6 6 C 1.81407 * 104.45072 * 62.17333 * 5 4 2 7 7 O 1.42099 * 104.27814 * 178.24593 * 5 4 2 8 8 O 1.42100 * 104.27749 * 306.10458 * 5 4 2 9 9 C 1.50696 * 109.47333 * 119.99655 * 2 1 3 10 10 O 1.21274 * 120.00644 * 251.68349 * 9 2 1 11 11 N 1.34783 * 119.99705 * 71.68081 * 9 2 1 12 12 C 1.47164 * 120.70625 * 357.32669 * 11 9 2 13 13 C 1.55889 * 107.95034 * 132.41008 * 12 11 9 14 14 H 1.09003 * 112.45919 * 181.84101 * 13 12 11 15 15 C 1.54539 * 108.44443 * 307.13191 * 13 12 11 16 16 C 1.53730 * 104.95913 * 88.28589 * 15 13 12 17 17 C 1.54547 * 104.95038 * 359.97438 * 16 15 13 18 18 H 1.09000 * 112.18047 * 146.28896 * 17 16 15 19 19 C 1.47163 * 120.71080 * 177.30448 * 11 9 2 20 20 N 1.48301 * 104.35827 * 24.58034 * 17 16 15 21 21 C 1.36935 * 128.08193 * 139.08088 * 20 17 16 22 22 H 1.08008 * 119.99953 * 34.15040 * 21 20 17 23 23 C 1.38812 * 120.00157 * 214.15324 * 21 20 17 24 24 N 1.31621 * 120.00137 * 193.45914 * 23 21 20 25 25 Si 1.86795 * 120.00130 * 13.45448 * 23 21 20 26 26 H 1.48500 * 109.47463 * 272.17887 * 25 23 21 27 27 H 1.48501 * 109.46905 * 32.18298 * 25 23 21 28 28 H 1.48510 * 109.47094 * 152.17605 * 25 23 21 29 29 H 1.09006 * 109.46836 * 292.81700 * 1 2 3 30 30 H 1.09004 * 109.46618 * 52.81024 * 1 2 3 31 31 H 1.08995 * 109.46803 * 172.81192 * 1 2 3 32 32 H 1.09005 * 109.46350 * 187.24830 * 3 2 1 33 33 H 1.08995 * 109.47445 * 307.24864 * 3 2 1 34 34 H 1.08997 * 109.47376 * 67.25498 * 3 2 1 35 35 H 0.97000 * 119.99839 * 217.03152 * 4 2 1 36 36 H 1.08996 * 109.46542 * 50.95109 * 6 5 4 37 37 H 1.09001 * 109.47022 * 170.95433 * 6 5 4 38 38 H 1.08995 * 109.47171 * 290.95484 * 6 5 4 39 39 H 1.09005 * 109.74852 * 252.36479 * 12 11 9 40 40 H 1.09000 * 109.75222 * 13.09684 * 12 11 9 41 41 H 1.09000 * 110.36700 * 207.00843 * 15 13 12 42 42 H 1.09008 * 110.36410 * 329.21213 * 15 13 12 43 43 H 1.09006 * 110.42201 * 241.07046 * 16 15 13 44 44 H 1.08996 * 110.20827 * 118.82209 * 16 15 13 45 45 H 1.08994 * 109.74993 * 107.62971 * 19 11 9 46 46 H 1.09000 * 109.78895 * 346.92091 * 19 11 9 47 47 H 0.96992 * 120.00379 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 -1.1962 5 16 1.2150 -0.5237 -2.6346 6 6 1.3321 1.2460 -3.0158 7 8 1.9843 -1.2842 -3.5559 8 8 -0.1264 -0.8804 -2.3302 9 6 2.0324 -0.7103 1.2305 10 8 2.5458 -0.0777 2.1288 11 7 1.9112 -2.0488 1.3326 12 6 1.2386 -2.8250 0.2786 13 6 2.1424 -4.0465 -0.0695 14 1 1.7261 -4.6578 -0.8702 15 6 3.5621 -3.5280 -0.3921 16 6 4.2863 -3.4847 0.9632 17 6 3.2421 -3.9802 1.9892 18 1 3.6997 -4.5425 2.8032 19 6 2.4489 -2.7652 2.5001 20 7 2.3072 -4.8099 1.1911 21 6 1.7346 -6.0052 1.5351 22 1 1.4679 -6.2002 2.5635 23 6 1.4969 -6.9665 0.5623 24 7 0.7178 -7.9934 0.8283 25 14 2.2826 -6.8025 -1.1244 26 1 1.4048 -5.9878 -2.0024 27 1 3.6043 -6.1384 -0.9923 28 1 2.4636 -8.1511 -1.7194 29 1 -0.3633 0.3985 0.9473 30 1 -0.3633 0.6212 -0.8187 31 1 -0.3633 -1.0196 -0.1286 32 1 3.1223 1.4452 -0.1297 33 1 1.5747 1.9925 -0.8180 34 1 1.7865 1.9176 0.9477 35 1 2.8124 -1.2455 -1.1456 36 1 2.3716 1.5655 -2.9419 37 1 0.9681 1.4245 -4.0276 38 1 0.7271 1.8112 -2.3070 39 1 0.2679 -3.1682 0.6366 40 1 1.1066 -2.2050 -0.6081 41 1 4.0714 -4.2135 -1.0695 42 1 3.5114 -2.5310 -0.8300 43 1 4.5940 -2.4656 1.1977 44 1 5.1503 -4.1491 0.9498 45 1 1.6296 -3.1009 3.1358 46 1 3.1079 -2.1066 3.0659 47 1 0.5520 -8.6653 0.1487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713710342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:34 Heat of formation + Delta-G solvation = -57.075373 kcal Electronic energy + Delta-G solvation = -32236.752692 eV Core-core repulsion = 28162.353273 eV Total energy + Delta-G solvation = -4074.399419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19006 -39.97415 -38.42591 -37.53858 -36.97566 -35.52855 -34.37694 -32.51046 -31.97600 -31.55871 -30.39057 -28.23283 -28.16464 -26.03884 -25.45564 -23.86166 -21.96519 -21.20229 -20.42103 -20.32043 -19.31601 -18.52065 -18.15799 -17.67857 -17.44615 -16.78237 -16.76622 -16.45947 -15.97124 -15.36036 -15.31172 -15.10825 -14.95802 -14.78886 -14.44455 -14.41751 -14.10350 -13.98041 -13.85365 -13.63721 -13.40407 -13.33454 -13.21741 -13.03651 -12.96807 -12.84129 -12.59632 -12.51266 -12.48414 -12.27440 -12.22536 -11.98427 -11.88675 -11.64088 -11.59336 -11.29907 -10.97823 -10.74771 -10.33960 -9.86066 -8.83053 -8.21654 -5.61709 -0.76372 1.25093 1.26490 1.35510 1.45106 1.80653 1.91544 2.36935 2.81488 2.99127 3.08078 3.18114 3.23563 3.63929 3.73842 3.81705 3.89690 3.97228 4.00207 4.05805 4.10876 4.18072 4.22995 4.39459 4.50772 4.61400 4.62869 4.67974 4.70472 4.75619 4.79652 4.84960 4.91320 4.94585 4.97351 5.05859 5.16879 5.27961 5.31332 5.36499 5.47474 5.74619 5.80758 6.11366 6.41204 6.67394 7.04955 7.44674 8.17209 8.98010 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013627 B = 0.005485 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.290555 B = 5103.661911 C = 6190.281547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.165 3.835 3 C -0.160 4.160 4 N -1.115 6.115 5 S 2.587 3.413 6 C -0.650 4.650 7 O -0.995 6.995 8 O -0.979 6.979 9 C 0.518 3.482 10 O -0.562 6.562 11 N -0.583 5.583 12 C 0.087 3.913 13 C 0.102 3.898 14 H 0.063 0.937 15 C -0.128 4.128 16 C -0.115 4.115 17 C 0.130 3.870 18 H 0.089 0.911 19 C 0.108 3.892 20 N -0.611 5.611 21 C -0.224 4.224 22 H 0.054 0.946 23 C -0.023 4.023 24 N -0.956 5.956 25 Si 0.933 3.067 26 H -0.280 1.280 27 H -0.239 1.239 28 H -0.310 1.310 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.418 0.582 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.050 0.950 40 H 0.114 0.886 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.098 0.902 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 25.296 -7.352 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.074 3.926 3 C -0.219 4.219 4 N -0.878 5.878 5 S 2.685 3.315 6 C -0.805 4.805 7 O -0.986 6.986 8 O -0.969 6.969 9 C 0.305 3.695 10 O -0.441 6.441 11 N -0.314 5.314 12 C -0.039 4.039 13 C -0.004 4.004 14 H 0.080 0.920 15 C -0.167 4.167 16 C -0.154 4.154 17 C 0.024 3.976 18 H 0.107 0.893 19 C -0.016 4.016 20 N -0.335 5.335 21 C -0.353 4.353 22 H 0.072 0.928 23 C -0.219 4.219 24 N -0.601 5.601 25 Si 0.762 3.238 26 H -0.208 1.208 27 H -0.163 1.163 28 H -0.239 1.239 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.258 0.742 36 H 0.178 0.822 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.116 0.884 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.763 24.727 -7.345 26.068 hybrid contribution 0.305 -0.916 -0.372 1.034 sum 4.068 23.811 -7.717 25.359 Atomic orbital electron populations 1.22742 0.90524 1.05467 1.05356 1.20537 0.96264 0.93939 0.81869 1.22434 1.03310 0.90877 1.05233 1.56217 1.44581 1.62866 1.24146 1.05403 0.73603 0.80213 0.72270 1.30541 1.14773 1.20770 1.14382 1.93596 1.71812 1.70466 1.62692 1.93661 1.37201 1.83197 1.82829 1.20796 0.78535 0.81443 0.88762 1.90664 1.45848 1.65562 1.42028 1.48022 1.55694 1.06117 1.21553 1.23194 0.94971 0.93881 0.91839 1.22861 0.95537 0.91790 0.90251 0.91958 1.22587 0.95182 1.00487 0.98429 1.22324 0.97565 1.01527 0.93939 1.22249 0.89755 0.90517 0.95110 0.89334 1.22206 0.98032 0.94055 0.87289 1.45415 1.51393 1.20545 1.16145 1.18401 1.32533 0.89581 0.94809 0.92834 1.25937 0.99018 0.94985 1.01957 1.69880 1.39618 1.14605 1.36008 0.86067 0.81435 0.75444 0.80818 1.20777 1.16304 1.23896 0.89674 0.87839 0.91140 0.90435 0.87851 0.90073 0.74222 0.82180 0.82830 0.82232 0.93124 0.86866 0.91775 0.90289 0.89870 0.91169 0.93097 0.88430 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 6.72 71.98 0.48 -3.03 16 2 C 0.17 3.21 0.75 2.86 0.00 3.21 16 3 C -0.16 -1.96 7.88 71.98 0.57 -1.39 16 4 N -1.11 -21.67 3.00 -155.17 -0.47 -22.14 16 5 S 2.59 47.91 5.38 -56.49 -0.30 47.60 16 6 C -0.65 -3.35 9.32 113.37 1.06 -2.30 16 7 O -1.00 -26.67 18.08 -127.65 -2.31 -28.98 16 8 O -0.98 -24.12 13.71 -127.65 -1.75 -25.87 16 9 C 0.52 14.21 6.52 87.65 0.57 14.78 16 10 O -0.56 -17.54 15.31 -3.01 -0.05 -17.59 16 11 N -0.58 -18.40 2.29 -811.10 -1.86 -20.25 16 12 C 0.09 3.06 4.39 87.25 0.38 3.45 16 13 C 0.10 4.17 2.93 46.17 0.14 4.31 16 14 H 0.06 2.88 3.80 -2.39 -0.01 2.87 16 15 C -0.13 -4.25 5.89 31.36 0.18 -4.06 16 16 C -0.11 -3.55 6.18 31.37 0.19 -3.35 16 17 C 0.13 4.75 4.27 45.45 0.19 4.95 16 18 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 19 C 0.11 3.63 5.91 86.53 0.51 4.14 16 20 N -0.61 -27.96 2.37 -633.10 -1.50 -29.46 16 21 C -0.22 -12.61 10.74 84.03 0.90 -11.71 16 22 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 23 C -0.02 -1.36 5.49 84.86 0.47 -0.89 16 24 N -0.96 -60.35 13.97 21.65 0.30 -60.04 16 25 Si 0.93 46.58 24.72 68.60 1.70 48.28 16 26 H -0.28 -13.73 6.51 99.48 0.65 -13.08 16 27 H -0.24 -10.97 5.50 99.48 0.55 -10.43 16 28 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 29 H 0.08 1.51 8.13 -2.38 -0.02 1.49 16 30 H 0.10 1.36 5.85 -2.39 -0.01 1.34 16 31 H 0.07 1.78 5.22 -2.39 -0.01 1.77 16 32 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.10 0.45 4.93 -2.39 -0.01 0.44 16 34 H 0.08 1.14 7.70 -2.39 -0.02 1.12 16 35 H 0.42 8.71 4.99 -96.75 -0.48 8.22 16 36 H 0.16 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.15 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.16 0.12 5.65 -2.39 -0.01 0.10 16 39 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.11 3.49 2.80 -2.39 -0.01 3.48 16 41 H 0.06 2.21 6.69 -2.39 -0.02 2.19 16 42 H 0.08 2.15 4.59 -2.38 -0.01 2.13 16 43 H 0.08 2.21 7.86 -2.38 -0.02 2.19 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.10 2.99 7.14 -2.39 -0.02 2.97 16 47 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -79.57 343.64 -0.26 -79.83 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.32 Total: 20.53 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 5.65 Total: 8.09 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -3.52 Total: -131.89 kcal Atomic # 8 Polarization: -68.33 SS G_CDS: -4.10 Total: -72.43 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.70 Total: 48.28 kcal Atomic # 16 Polarization: 47.91 SS G_CDS: -0.30 Total: 47.60 kcal Total: -79.57 -0.26 -79.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713710342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.750 kcal (2) G-P(sol) polarization free energy of solvation -79.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds