Wall clock time and date at job start Wed Apr 1 2020 03:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.47050 * 2 1 4 4 C 1.52995 * 109.47420 * 119.99845 * 2 1 3 5 5 H 1.09003 * 109.47022 * 185.00185 * 4 2 1 6 6 C 1.52998 * 109.47443 * 305.00273 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21513 * 120.00272 * 0.02562 * 8 7 6 10 10 C 1.48171 * 119.99593 * 179.97438 * 8 7 6 11 11 C 1.39305 * 119.72376 * 179.97438 * 10 8 7 12 12 C 1.38591 * 119.06247 * 179.97438 * 11 10 8 13 13 C 1.50698 * 120.75663 * 179.97438 * 12 11 10 14 14 F 1.39897 * 109.47081 * 90.00127 * 13 12 11 15 15 F 1.39902 * 109.47094 * 209.99918 * 13 12 11 16 16 F 1.39899 * 109.47058 * 329.99918 * 13 12 11 17 17 C 1.38622 * 118.48492 * 0.02562 * 12 11 10 18 18 C 1.38566 * 119.35631 * 359.97438 * 17 12 11 19 19 N 1.31520 * 120.89680 * 359.74553 * 18 17 12 20 20 N 1.46498 * 109.47120 * 65.00330 * 4 2 1 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08994 * 109.46805 * 299.99906 * 1 2 3 30 30 H 1.08994 * 109.47010 * 59.99907 * 1 2 3 31 31 H 1.09002 * 109.46717 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47301 * 240.00345 * 2 1 3 33 33 H 1.09003 * 109.46787 * 60.00031 * 3 2 1 34 34 H 1.08992 * 109.47069 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46668 * 300.00187 * 3 2 1 36 36 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 37 37 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 38 38 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 39 39 H 1.08005 * 120.47020 * 0.02562 * 11 10 8 40 40 H 1.08002 * 120.32370 * 179.97438 * 17 12 11 41 41 H 1.07998 * 119.54610 * 179.97438 * 18 17 12 42 42 H 0.97004 * 119.99747 * 265.00379 * 20 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1264 -0.6442 1.2951 6 6 1.4301 -0.0763 2.4953 7 7 1.8229 -0.8397 3.6824 8 6 1.3997 -0.4536 4.9023 9 8 0.6920 0.5274 5.0176 10 6 1.7965 -1.2261 6.1028 11 6 1.3563 -0.8216 7.3611 12 6 1.7353 -1.5545 8.4746 13 6 1.2815 -1.1510 9.8538 14 9 0.0681 -1.7816 10.1486 15 9 2.2458 -1.5333 10.7925 16 9 1.1095 0.2366 9.9007 17 6 2.5422 -2.6666 8.2909 18 6 2.9429 -3.0110 7.0099 19 7 2.5639 -2.3007 5.9699 20 7 1.6526 -2.1328 1.1905 21 6 2.4347 -3.0299 0.5134 22 1 3.3375 -2.6969 0.0228 23 6 2.0674 -4.3674 0.4573 24 7 0.9700 -4.7741 1.0597 25 14 3.1346 -5.5914 -0.4658 26 1 2.6860 -5.6719 -1.8792 27 1 4.5506 -5.1463 -0.4205 28 1 3.0156 -6.9289 0.1682 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.7897 0.9487 2.5870 37 1 0.3436 -0.0736 2.4081 38 1 2.3882 -1.6226 3.5903 39 1 0.7279 0.0503 7.4673 40 1 2.8555 -3.2589 9.1379 41 1 3.5719 -3.8766 6.8633 42 1 0.8420 -2.4319 1.6313 43 1 0.4160 -4.1387 1.5394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715690949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:11 Heat of formation + Delta-G solvation = -144.221228 kcal Electronic energy + Delta-G solvation = -30270.826976 eV Core-core repulsion = 25515.347938 eV Total energy + Delta-G solvation = -4755.479038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.56668 -48.08114 -48.02076 -40.93692 -39.14255 -37.43086 -34.28371 -33.58402 -33.52102 -31.90462 -30.23186 -27.54294 -27.14784 -26.75845 -24.79539 -23.48188 -23.24459 -22.56739 -20.75462 -19.35452 -18.90760 -18.89109 -18.50566 -17.43223 -17.15571 -16.65949 -16.36479 -15.73368 -15.45063 -15.12323 -14.89111 -14.79001 -14.53669 -14.41959 -14.39479 -14.16650 -14.15321 -13.95743 -13.74536 -13.59626 -13.53382 -13.19672 -12.72231 -12.66918 -12.48746 -11.97811 -11.53035 -11.33038 -11.01891 -10.77900 -10.67638 -10.62055 -10.39595 -10.27828 -10.04604 -9.98742 -9.78150 -9.65774 -9.20803 -8.94408 -8.75917 -7.09825 -6.13395 -3.15042 0.16958 0.48063 2.13000 2.54846 3.07785 3.24932 3.49239 3.50743 3.53119 3.58999 3.67074 3.93501 3.98013 4.34153 4.46277 4.53664 4.62591 4.97279 5.14071 5.23060 5.27509 5.29040 5.39766 5.44556 5.58973 5.67944 5.70424 5.84720 5.99521 6.00024 6.04956 6.24017 6.26795 6.34128 6.49130 6.61380 6.71747 6.88689 6.95702 7.29627 7.77353 7.77440 8.29395 8.71328 9.15699 10.02555 10.16769 11.34097 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.002904 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.016767 B = 9640.469866 C =11374.766614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.148 4.148 4 C 0.176 3.824 5 H 0.055 0.945 6 C 0.105 3.895 7 N -0.687 5.687 8 C 0.564 3.436 9 O -0.542 6.542 10 C 0.093 3.907 11 C -0.070 4.070 12 C -0.148 4.148 13 C 0.514 3.486 14 F -0.170 7.170 15 F -0.173 7.173 16 F -0.170 7.170 17 C -0.106 4.106 18 C 0.109 3.891 19 N -0.425 5.425 20 N -0.730 5.730 21 C -0.332 4.332 22 H 0.065 0.935 23 C -0.040 4.040 24 N -0.941 5.941 25 Si 1.080 2.920 26 H -0.297 1.297 27 H -0.295 1.295 28 H -0.289 1.289 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.421 0.579 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.179 0.821 42 H 0.368 0.632 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 7.907 15.206 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.066 3.934 5 H 0.073 0.927 6 C -0.019 4.019 7 N -0.338 5.338 8 C 0.347 3.653 9 O -0.420 6.420 10 C -0.046 4.046 11 C -0.091 4.091 12 C -0.158 4.158 13 C 0.460 3.540 14 F -0.152 7.152 15 F -0.154 7.154 16 F -0.152 7.152 17 C -0.126 4.126 18 C -0.050 4.050 19 N -0.136 5.136 20 N -0.373 5.373 21 C -0.463 4.463 22 H 0.083 0.917 23 C -0.238 4.238 24 N -0.586 5.586 25 Si 0.912 3.088 26 H -0.224 1.224 27 H -0.222 1.222 28 H -0.215 1.215 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.260 0.740 39 H 0.179 0.821 40 H 0.172 0.828 41 H 0.196 0.804 42 H 0.202 0.798 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.487 6.822 13.883 15.857 hybrid contribution -0.494 1.393 1.517 2.118 sum 2.993 8.216 15.401 17.710 Atomic orbital electron populations 1.21792 0.95894 1.02099 1.00102 1.21727 0.95935 0.94697 1.00944 1.21910 1.00618 0.97038 1.01022 1.20442 0.97301 0.85423 0.90262 0.92676 1.21986 1.00673 0.94895 0.84322 1.45903 1.51010 1.31759 1.05099 1.17705 0.80807 0.83911 0.82863 1.90776 1.38141 1.26891 1.86158 1.21332 0.96222 0.93484 0.93559 1.21892 0.96947 0.99431 0.90818 1.20354 1.03178 0.99698 0.92554 1.18044 0.75381 0.75101 0.85507 1.93260 1.45590 1.82079 1.94221 1.93212 1.63443 1.90975 1.67759 1.93233 1.95304 1.29853 1.96774 1.22249 0.94879 0.94908 1.00597 1.23010 0.96972 0.98497 0.86532 1.67715 1.07658 1.03406 1.34777 1.42444 1.28403 1.02082 1.64365 1.20017 1.05404 0.91123 1.29759 0.91698 1.25690 1.00260 0.96126 1.01724 1.70854 1.14758 1.36708 1.36269 0.83225 0.74129 0.75953 0.75536 1.22448 1.22169 1.21500 0.93388 0.93943 0.91954 0.90627 0.93020 0.93117 0.93399 0.91177 0.90955 0.74030 0.82137 0.82800 0.80433 0.79841 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.60 37.16 0.32 -2.00 16 2 C -0.11 -1.86 2.88 -90.62 -0.26 -2.13 16 3 C -0.15 -2.02 8.95 37.16 0.33 -1.69 16 4 C 0.18 3.23 2.22 -67.93 -0.15 3.08 16 5 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 6 C 0.11 1.76 4.53 -4.04 -0.02 1.74 16 7 N -0.69 -11.71 5.38 -61.15 -0.33 -12.04 16 8 C 0.56 9.43 7.81 -12.18 -0.10 9.34 16 9 O -0.54 -9.99 16.32 5.35 0.09 -9.90 16 10 C 0.09 1.34 6.75 -83.01 -0.56 0.78 16 11 C -0.07 -0.86 9.00 -39.05 -0.35 -1.21 16 12 C -0.15 -1.53 5.48 -104.35 -0.57 -2.10 16 13 C 0.51 4.96 3.39 36.00 0.12 5.08 16 14 F -0.17 -1.75 17.30 2.25 0.04 -1.71 16 15 F -0.17 -1.55 16.55 2.25 0.04 -1.52 16 16 F -0.17 -1.75 16.55 2.25 0.04 -1.72 16 17 C -0.11 -0.92 9.49 -39.32 -0.37 -1.30 16 18 C 0.11 1.11 11.18 -17.56 -0.20 0.92 16 19 N -0.42 -5.88 9.54 -9.80 -0.09 -5.98 16 20 N -0.73 -16.57 4.01 -53.43 -0.21 -16.79 16 21 C -0.33 -8.64 9.93 -15.06 -0.15 -8.78 16 22 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16 23 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 24 N -0.94 -27.80 13.70 55.49 0.76 -27.04 16 25 Si 1.08 24.99 29.92 -169.99 -5.09 19.90 16 26 H -0.30 -6.77 7.11 56.52 0.40 -6.36 16 27 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H 0.05 0.73 6.23 -51.93 -0.32 0.41 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.18 7.75 -51.93 -0.40 0.78 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.05 0.67 6.68 -51.93 -0.35 0.32 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.09 6.81 -51.92 -0.35 0.73 16 37 H 0.07 1.26 6.06 -51.93 -0.31 0.95 16 38 H 0.42 7.61 7.47 -40.82 -0.30 7.31 16 39 H 0.16 1.90 7.28 -52.48 -0.38 1.52 16 40 H 0.15 0.87 7.69 -52.49 -0.40 0.46 16 41 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.37 8.90 6.63 -40.82 -0.27 8.63 16 43 H 0.26 7.48 6.77 -40.82 -0.28 7.21 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -30.40 372.21 -6.32 -36.72 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -5.12 Total: 13.92 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.05 Total: 0.54 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.12 Total: -61.84 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.11 Total: -4.95 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.09 Total: 19.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.40 -6.32 -36.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715690949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.500 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds