Wall clock time and date at job start Wed Apr 1 2020 03:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.47050 * 2 1 4 4 C 1.52995 * 109.47420 * 119.99845 * 2 1 3 5 5 H 1.09003 * 109.47022 * 185.00185 * 4 2 1 6 6 C 1.52998 * 109.47443 * 305.00273 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21513 * 120.00272 * 0.02562 * 8 7 6 10 10 C 1.48171 * 119.99593 * 179.97438 * 8 7 6 11 11 C 1.39305 * 119.72376 * 179.97438 * 10 8 7 12 12 C 1.38591 * 119.06247 * 179.97438 * 11 10 8 13 13 C 1.50698 * 120.75663 * 179.97438 * 12 11 10 14 14 F 1.39897 * 109.47081 * 90.00127 * 13 12 11 15 15 F 1.39902 * 109.47094 * 209.99918 * 13 12 11 16 16 F 1.39899 * 109.47058 * 329.99918 * 13 12 11 17 17 C 1.38622 * 118.48492 * 0.02562 * 12 11 10 18 18 C 1.38566 * 119.35631 * 359.97438 * 17 12 11 19 19 N 1.31520 * 120.89680 * 359.74553 * 18 17 12 20 20 N 1.46498 * 109.47120 * 65.00330 * 4 2 1 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08994 * 109.46805 * 299.99906 * 1 2 3 30 30 H 1.08994 * 109.47010 * 59.99907 * 1 2 3 31 31 H 1.09002 * 109.46717 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47301 * 240.00345 * 2 1 3 33 33 H 1.09003 * 109.46787 * 60.00031 * 3 2 1 34 34 H 1.08992 * 109.47069 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46668 * 300.00187 * 3 2 1 36 36 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 37 37 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 38 38 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 39 39 H 1.08005 * 120.47020 * 0.02562 * 11 10 8 40 40 H 1.08002 * 120.32370 * 179.97438 * 17 12 11 41 41 H 1.07998 * 119.54610 * 179.97438 * 18 17 12 42 42 H 0.97004 * 119.99747 * 265.00379 * 20 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.1264 -0.6442 1.2951 6 6 1.4301 -0.0763 2.4953 7 7 1.8229 -0.8397 3.6824 8 6 1.3997 -0.4536 4.9023 9 8 0.6920 0.5274 5.0176 10 6 1.7965 -1.2261 6.1028 11 6 1.3563 -0.8216 7.3611 12 6 1.7353 -1.5545 8.4746 13 6 1.2815 -1.1510 9.8538 14 9 0.0681 -1.7816 10.1486 15 9 2.2458 -1.5333 10.7925 16 9 1.1095 0.2366 9.9007 17 6 2.5422 -2.6666 8.2909 18 6 2.9429 -3.0110 7.0099 19 7 2.5639 -2.3007 5.9699 20 7 1.6526 -2.1328 1.1905 21 6 2.4347 -3.0299 0.5134 22 1 3.3375 -2.6969 0.0228 23 6 2.0674 -4.3674 0.4573 24 7 0.9700 -4.7741 1.0597 25 14 3.1346 -5.5914 -0.4658 26 1 2.6860 -5.6719 -1.8792 27 1 4.5506 -5.1463 -0.4205 28 1 3.0156 -6.9289 0.1682 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.7897 0.9487 2.5870 37 1 0.3436 -0.0736 2.4081 38 1 2.3882 -1.6226 3.5903 39 1 0.7279 0.0503 7.4673 40 1 2.8555 -3.2589 9.1379 41 1 3.5719 -3.8766 6.8633 42 1 0.8420 -2.4319 1.6313 43 1 0.4160 -4.1387 1.5394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715690949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:10 Heat of formation + Delta-G solvation = -163.340994 kcal Electronic energy + Delta-G solvation = -30271.656071 eV Core-core repulsion = 25515.347938 eV Total energy + Delta-G solvation = -4756.308133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.34427 -48.84691 -48.80889 -41.94345 -40.39426 -38.90689 -35.57659 -35.35651 -34.56672 -32.84907 -32.00295 -29.03013 -28.02634 -27.98165 -26.11483 -25.12244 -24.22487 -23.95334 -21.90421 -20.60528 -19.75508 -19.67406 -19.64321 -19.35955 -18.22162 -17.91997 -17.18774 -16.87489 -16.77183 -16.45969 -15.93953 -15.78073 -15.65584 -15.52941 -15.42691 -15.30675 -15.20007 -14.96946 -14.94414 -14.92953 -14.83361 -14.46062 -14.01820 -13.53254 -13.51291 -13.33226 -12.93860 -12.75968 -12.70228 -12.43086 -12.17713 -11.86914 -11.70541 -11.61720 -11.57207 -11.43850 -11.12130 -10.91063 -10.80598 -10.58423 -10.11152 -9.05713 -8.29612 -5.24383 -0.74397 -0.39377 1.31938 1.44132 1.62307 1.71419 1.85285 1.94559 2.42772 2.47944 2.74781 2.77691 2.93092 3.19329 3.47709 3.53189 3.57782 3.65371 3.71347 3.80751 4.09349 4.15162 4.23064 4.27920 4.35061 4.41777 4.43751 4.57521 4.62060 4.81602 4.84943 5.02718 5.07199 5.12216 5.19366 5.22872 5.34740 5.50257 5.56841 5.70676 6.25355 6.54994 6.56620 6.96326 7.14297 8.04337 8.16616 9.21117 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.002904 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.016767 B = 9640.469866 C =11374.766614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C -0.140 4.140 4 C 0.177 3.823 5 H 0.052 0.948 6 C 0.114 3.886 7 N -0.692 5.692 8 C 0.562 3.438 9 O -0.566 6.566 10 C 0.066 3.934 11 C -0.071 4.071 12 C -0.152 4.152 13 C 0.522 3.478 14 F -0.173 7.173 15 F -0.165 7.165 16 F -0.175 7.175 17 C -0.079 4.079 18 C 0.107 3.893 19 N -0.454 5.454 20 N -0.737 5.737 21 C -0.319 4.319 22 H 0.066 0.934 23 C -0.098 4.098 24 N -0.975 5.975 25 Si 1.125 2.875 26 H -0.292 1.292 27 H -0.273 1.273 28 H -0.297 1.297 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.416 0.584 39 H 0.158 0.842 40 H 0.194 0.806 41 H 0.209 0.791 42 H 0.358 0.642 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.796 8.229 16.228 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.198 4.198 4 C 0.068 3.932 5 H 0.070 0.930 6 C -0.010 4.010 7 N -0.341 5.341 8 C 0.347 3.653 9 O -0.446 6.446 10 C -0.071 4.071 11 C -0.092 4.092 12 C -0.161 4.161 13 C 0.468 3.532 14 F -0.155 7.155 15 F -0.146 7.146 16 F -0.156 7.156 17 C -0.099 4.099 18 C -0.053 4.053 19 N -0.165 5.165 20 N -0.378 5.378 21 C -0.451 4.451 22 H 0.084 0.916 23 C -0.290 4.290 24 N -0.623 5.623 25 Si 0.951 3.049 26 H -0.220 1.220 27 H -0.198 1.198 28 H -0.224 1.224 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.253 0.747 39 H 0.175 0.825 40 H 0.211 0.789 41 H 0.226 0.774 42 H 0.190 0.810 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.931 7.215 14.898 17.272 hybrid contribution -0.896 1.324 1.289 2.053 sum 4.035 8.539 16.186 18.740 Atomic orbital electron populations 1.21730 0.95607 1.00350 1.01600 1.21598 0.96115 0.96511 0.98575 1.21832 1.01052 0.94497 1.02383 1.20590 0.97134 0.83508 0.91929 0.93033 1.21875 1.00002 0.95489 0.83592 1.45908 1.51131 1.31615 1.05470 1.18086 0.80077 0.83738 0.83388 1.90742 1.39188 1.28009 1.86622 1.20949 0.98508 0.94581 0.93078 1.21848 0.96923 0.99665 0.90805 1.20460 1.03384 1.00016 0.92239 1.17863 0.75321 0.74828 0.85226 1.93259 1.45874 1.82112 1.94213 1.93230 1.63076 1.90863 1.67400 1.93228 1.95332 1.30296 1.96777 1.22687 0.92314 0.93667 1.01246 1.23611 0.96714 0.98663 0.86330 1.67641 1.08326 1.03791 1.36792 1.42525 1.27693 1.03633 1.63990 1.20288 1.05064 0.91575 1.28139 0.91583 1.26912 1.00865 0.98415 1.02779 1.70964 1.16243 1.36568 1.38543 0.82634 0.73997 0.73757 0.74480 1.21968 1.19788 1.22364 0.92272 0.92044 0.95277 0.93036 0.91952 0.92415 0.91748 0.89444 0.91804 0.74685 0.82455 0.78866 0.77425 0.80955 0.94746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 8.60 71.98 0.62 -3.79 16 2 C -0.11 -3.51 2.88 -10.79 -0.03 -3.54 16 3 C -0.14 -3.52 8.95 71.99 0.64 -2.87 16 4 C 0.18 6.53 2.22 44.99 0.10 6.63 16 5 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 6 C 0.11 3.83 4.53 86.38 0.39 4.23 16 7 N -0.69 -24.12 5.38 -465.66 -2.50 -26.63 16 8 C 0.56 19.28 7.81 86.88 0.68 19.96 16 9 O -0.57 -21.33 16.32 -3.75 -0.06 -21.39 16 10 C 0.07 1.92 6.75 41.91 0.28 2.20 16 11 C -0.07 -1.73 9.00 22.61 0.20 -1.53 16 12 C -0.15 -2.84 5.48 -19.69 -0.11 -2.95 16 13 C 0.52 9.06 3.39 71.24 0.24 9.30 16 14 F -0.17 -3.27 17.30 44.97 0.78 -2.49 16 15 F -0.16 -2.50 16.55 44.97 0.74 -1.75 16 16 F -0.18 -3.39 16.55 44.97 0.74 -2.65 16 17 C -0.08 -1.14 9.49 22.44 0.21 -0.93 16 18 C 0.11 1.95 11.18 84.82 0.95 2.90 16 19 N -0.45 -12.41 9.54 -184.91 -1.76 -14.17 16 20 N -0.74 -34.25 4.01 -322.95 -1.30 -35.54 16 21 C -0.32 -16.77 9.93 84.03 0.83 -15.94 16 22 H 0.07 3.41 7.83 -2.91 -0.02 3.39 16 23 C -0.10 -5.44 5.50 84.86 0.47 -4.97 16 24 N -0.97 -59.10 13.70 21.65 0.30 -58.81 16 25 Si 1.12 50.53 29.92 68.60 2.05 52.58 16 26 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 28 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 29 H 0.06 1.78 6.23 -2.39 -0.01 1.76 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.03 1.12 7.75 -2.39 -0.02 1.10 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.45 6.68 -2.39 -0.02 1.43 16 34 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 2.63 6.81 -2.38 -0.02 2.62 16 37 H 0.06 2.26 6.06 -2.39 -0.01 2.25 16 38 H 0.42 15.49 7.47 -92.71 -0.69 14.80 16 39 H 0.16 3.81 7.28 -2.91 -0.02 3.79 16 40 H 0.19 1.24 7.69 -2.91 -0.02 1.22 16 41 H 0.21 2.37 8.06 -2.91 -0.02 2.34 16 42 H 0.36 18.07 6.63 -92.71 -0.61 17.45 16 43 H 0.24 14.78 6.77 -92.71 -0.63 14.16 16 Total: -1.00 -67.33 372.21 4.39 -62.93 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -0.08 Total: 39.22 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.48 Total: 8.69 kcal Atomic # 7 Polarization: -129.88 SS G_CDS: -5.27 Total: -135.15 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.06 Total: -21.39 kcal Atomic # 9 Polarization: -9.16 SS G_CDS: 2.27 Total: -6.89 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -67.33 4.39 -62.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715690949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.408 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds