Wall clock time and date at job start Wed Apr 1 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21545 * 120.00317 * 0.02562 * 8 7 6 10 10 C 1.47839 * 119.99694 * 179.97438 * 8 7 6 11 11 C 1.39566 * 120.55898 * 359.72270 * 10 8 7 12 12 N 1.31670 * 120.56415 * 179.75067 * 11 10 8 13 13 C 1.31954 * 121.87738 * 0.54109 * 12 11 10 14 14 C 1.38310 * 121.08711 * 359.72367 * 13 12 11 15 15 C 1.50697 * 120.35244 * 180.02562 * 14 13 12 16 16 F 1.39908 * 109.46711 * 269.97537 * 15 14 13 17 17 F 1.39898 * 109.47099 * 29.97338 * 15 14 13 18 18 F 1.39900 * 109.47139 * 149.97743 * 15 14 13 19 19 C 1.38408 * 119.29943 * 359.97438 * 14 13 12 20 20 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 30 30 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 31 31 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 33 33 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 35 35 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 36 36 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 37 37 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 38 38 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 39 39 H 1.08001 * 119.72069 * 0.02562 * 11 10 8 40 40 H 1.08003 * 119.45804 * 179.74713 * 13 12 11 41 41 H 1.07995 * 120.85080 * 180.02562 * 19 14 13 42 42 H 0.97004 * 119.99747 * 265.00379 * 20 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0424 -4.7525 1.8257 10 6 2.3952 -4.9158 3.7240 11 6 3.2778 -4.2769 4.5962 12 7 3.7995 -4.9268 5.6156 13 6 3.5230 -6.1959 5.8482 14 6 2.6620 -6.9013 5.0272 15 6 2.3574 -8.3501 5.3085 16 9 3.2807 -9.1594 4.6378 17 9 2.4437 -8.5860 6.6847 18 9 1.0652 -8.6498 4.8640 19 6 2.0822 -6.2621 3.9450 20 7 3.5050 -0.7207 1.2495 21 6 4.1892 0.3542 1.7510 22 1 3.6488 1.2015 2.1466 23 6 5.5773 0.3549 1.7508 24 7 6.2358 -0.6800 1.2736 25 14 6.5107 1.8210 2.4355 26 1 7.9708 1.5730 2.3266 27 1 6.1563 3.0384 1.6624 28 1 6.1470 2.0171 3.8618 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.4437 -2.1651 1.3387 37 1 1.8184 -2.6510 0.3178 38 1 2.7227 -2.4348 2.9848 39 1 3.5316 -3.2394 4.4362 40 1 3.9762 -6.6919 6.6938 41 1 1.4060 -6.7887 3.2880 42 1 3.9903 -1.4819 0.8944 43 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715693801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:31 Heat of formation + Delta-G solvation = -146.822569 kcal Electronic energy + Delta-G solvation = -30228.169134 eV Core-core repulsion = 25472.577294 eV Total energy + Delta-G solvation = -4755.591841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.51024 -48.03108 -47.95932 -40.99228 -39.25395 -37.43932 -34.35138 -33.52423 -33.44489 -32.45115 -30.31696 -28.16073 -26.75900 -26.22431 -24.92431 -23.49225 -23.32136 -22.07294 -20.75000 -19.64226 -18.88274 -18.82884 -18.81562 -17.58018 -17.37042 -17.08131 -16.66175 -15.56589 -15.44744 -14.94760 -14.84082 -14.74838 -14.52440 -14.41285 -14.17972 -14.14385 -14.10662 -13.91619 -13.72920 -13.60674 -13.53109 -13.31065 -13.07758 -12.52222 -12.33813 -12.06299 -11.72886 -11.31878 -11.03819 -10.85389 -10.60937 -10.55517 -10.35426 -10.21830 -10.15280 -9.96667 -9.81663 -9.79580 -9.29079 -9.01811 -8.91636 -7.19280 -6.19998 -3.23136 0.10255 0.50471 2.21254 2.58975 3.05677 3.29269 3.38020 3.45577 3.47093 3.64322 3.65229 3.88970 4.03911 4.24015 4.34970 4.55021 4.57300 4.72466 4.93406 5.16432 5.20836 5.35695 5.40894 5.50261 5.52239 5.63617 5.69974 5.81873 5.91156 6.00423 6.08972 6.21688 6.29008 6.36826 6.47598 6.48098 6.69348 6.91954 7.19938 7.29811 7.54499 7.70507 8.15033 8.63132 9.06518 9.93595 10.07859 11.26445 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.002826 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.874042 B = 9906.443768 C =11606.492622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.139 4.139 4 C 0.175 3.825 5 H 0.056 0.944 6 C 0.111 3.889 7 N -0.703 5.703 8 C 0.560 3.440 9 O -0.541 6.541 10 C -0.183 4.183 11 C 0.173 3.827 12 N -0.476 5.476 13 C 0.174 3.826 14 C -0.253 4.253 15 C 0.520 3.480 16 F -0.172 7.172 17 F -0.174 7.174 18 F -0.173 7.173 19 C 0.032 3.968 20 N -0.733 5.733 21 C -0.331 4.331 22 H 0.068 0.932 23 C -0.039 4.039 24 N -0.939 5.939 25 Si 1.074 2.926 26 H -0.286 1.286 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.409 0.591 39 H 0.176 0.824 40 H 0.173 0.827 41 H 0.160 0.840 42 H 0.367 0.633 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 -10.608 7.424 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.064 3.936 5 H 0.074 0.926 6 C -0.013 4.013 7 N -0.355 5.355 8 C 0.345 3.655 9 O -0.419 6.419 10 C -0.188 4.188 11 C 0.015 3.985 12 N -0.183 5.183 13 C 0.016 3.984 14 C -0.256 4.256 15 C 0.465 3.535 16 F -0.153 7.153 17 F -0.155 7.155 18 F -0.154 7.154 19 C 0.005 3.995 20 N -0.376 5.376 21 C -0.462 4.462 22 H 0.086 0.914 23 C -0.238 4.238 24 N -0.584 5.584 25 Si 0.905 3.095 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.222 1.222 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.247 0.753 39 H 0.193 0.807 40 H 0.190 0.810 41 H 0.178 0.822 42 H 0.201 0.799 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.278 -9.740 7.838 14.994 hybrid contribution -1.737 -1.220 -0.757 2.254 sum -10.015 -10.960 7.081 16.449 Atomic orbital electron populations 1.21948 0.96716 1.00973 1.01113 1.21712 0.93650 0.97947 0.99723 1.21812 1.04277 0.94431 0.99059 1.20499 0.85875 0.90815 0.96375 0.92572 1.21867 0.97687 0.93328 0.88394 1.45923 1.48151 1.10341 1.31048 1.17813 0.81471 0.82174 0.84081 1.90776 1.36357 1.67917 1.46883 1.21083 1.02656 0.95416 0.99617 1.23530 0.87542 1.00474 0.86929 1.67985 1.23139 1.08150 1.19024 1.22918 0.89715 0.89900 0.95881 1.21013 1.07630 0.94265 1.02735 1.17942 0.74557 0.86718 0.74331 1.93258 1.66254 1.75507 1.80330 1.93206 1.95923 1.95406 1.30953 1.93221 1.38721 1.94322 1.89177 1.21493 0.92590 0.92919 0.92478 1.42490 0.99370 1.21004 1.74745 1.19975 0.91558 0.97404 1.37231 0.91398 1.25690 0.93403 1.03642 1.01056 1.70908 1.37386 1.07018 1.43054 0.83314 0.76471 0.74190 0.75518 1.21122 1.22270 1.22213 0.93093 0.93417 0.93062 0.92026 0.89442 0.94951 0.93998 0.90985 0.91536 0.75308 0.80704 0.80973 0.82200 0.79898 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.84 37.16 0.33 -1.64 16 2 C -0.11 -1.74 2.69 -90.62 -0.24 -1.99 16 3 C -0.14 -2.40 8.26 37.16 0.31 -2.09 16 4 C 0.17 2.97 2.18 -67.93 -0.15 2.82 16 5 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 6 C 0.11 1.70 4.73 -4.04 -0.02 1.69 16 7 N -0.70 -10.39 5.34 -61.25 -0.33 -10.72 16 8 C 0.56 8.39 7.78 -12.33 -0.10 8.29 16 9 O -0.54 -9.49 16.42 5.33 0.09 -9.40 16 10 C -0.18 -2.34 5.89 -104.82 -0.62 -2.95 16 11 C 0.17 2.13 10.71 -17.13 -0.18 1.95 16 12 N -0.48 -5.83 10.35 -12.91 -0.13 -5.96 16 13 C 0.17 1.77 10.56 -17.47 -0.18 1.58 16 14 C -0.25 -2.61 5.46 -104.53 -0.57 -3.18 16 15 C 0.52 5.01 3.38 36.00 0.12 5.13 16 16 F -0.17 -1.78 17.30 2.25 0.04 -1.74 16 17 F -0.17 -1.58 16.48 2.25 0.04 -1.54 16 18 F -0.17 -1.76 16.53 2.25 0.04 -1.72 16 19 C 0.03 0.37 9.06 -38.87 -0.35 0.01 16 20 N -0.73 -15.43 4.44 -53.43 -0.24 -15.67 16 21 C -0.33 -7.98 7.57 -15.06 -0.11 -8.10 16 22 H 0.07 1.63 7.40 -52.48 -0.39 1.25 16 23 C -0.04 -1.03 5.50 -17.43 -0.10 -1.13 16 24 N -0.94 -26.63 13.70 55.49 0.76 -25.87 16 25 Si 1.07 24.03 29.92 -169.99 -5.09 18.95 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.30 -6.39 7.11 56.52 0.40 -5.98 16 28 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.63 6.55 -51.93 -0.34 0.29 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.82 6.01 -51.93 -0.31 1.51 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.03 6.71 -51.92 -0.35 0.68 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.41 5.98 6.21 -40.82 -0.25 5.73 16 39 H 0.18 2.04 6.42 -52.49 -0.34 1.71 16 40 H 0.17 1.27 7.60 -52.48 -0.40 0.87 16 41 H 0.16 1.78 7.36 -52.49 -0.39 1.40 16 42 H 0.37 8.30 6.63 -40.82 -0.27 8.03 16 43 H 0.26 7.14 6.77 -40.82 -0.28 6.86 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -28.76 368.98 -6.19 -34.95 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.06 Total: 12.77 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.87 Total: 0.40 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.06 Total: -58.22 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.00 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.09 Total: 18.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.76 -6.19 -34.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715693801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.868 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds