Wall clock time and date at job start Wed Apr 1 2020 03:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21545 * 120.00317 * 0.02562 * 8 7 6 10 10 C 1.47839 * 119.99694 * 179.97438 * 8 7 6 11 11 C 1.39566 * 120.55898 * 359.72270 * 10 8 7 12 12 N 1.31670 * 120.56415 * 179.75067 * 11 10 8 13 13 C 1.31954 * 121.87738 * 0.54109 * 12 11 10 14 14 C 1.38310 * 121.08711 * 359.72367 * 13 12 11 15 15 C 1.50697 * 120.35244 * 180.02562 * 14 13 12 16 16 F 1.39908 * 109.46711 * 269.97537 * 15 14 13 17 17 F 1.39898 * 109.47099 * 29.97338 * 15 14 13 18 18 F 1.39900 * 109.47139 * 149.97743 * 15 14 13 19 19 C 1.38408 * 119.29943 * 359.97438 * 14 13 12 20 20 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 21 21 C 1.36935 * 120.00239 * 84.99640 * 20 4 2 22 22 H 1.08004 * 120.00069 * 0.02562 * 21 20 4 23 23 C 1.38811 * 120.00368 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 359.72375 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 179.72253 * 25 23 21 27 27 H 1.48508 * 109.46883 * 299.72375 * 25 23 21 28 28 H 1.48497 * 109.46870 * 59.72186 * 25 23 21 29 29 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 30 30 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 31 31 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 33 33 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 35 35 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 36 36 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 37 37 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 38 38 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 39 39 H 1.08001 * 119.72069 * 0.02562 * 11 10 8 40 40 H 1.08003 * 119.45804 * 179.74713 * 13 12 11 41 41 H 1.07995 * 120.85080 * 180.02562 * 19 14 13 42 42 H 0.97004 * 119.99747 * 265.00379 * 20 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0424 -4.7525 1.8257 10 6 2.3952 -4.9158 3.7240 11 6 3.2778 -4.2769 4.5962 12 7 3.7995 -4.9268 5.6156 13 6 3.5230 -6.1959 5.8482 14 6 2.6620 -6.9013 5.0272 15 6 2.3574 -8.3501 5.3085 16 9 3.2807 -9.1594 4.6378 17 9 2.4437 -8.5860 6.6847 18 9 1.0652 -8.6498 4.8640 19 6 2.0822 -6.2621 3.9450 20 7 3.5050 -0.7207 1.2495 21 6 4.1892 0.3542 1.7510 22 1 3.6488 1.2015 2.1466 23 6 5.5773 0.3549 1.7508 24 7 6.2358 -0.6800 1.2736 25 14 6.5107 1.8210 2.4355 26 1 7.9708 1.5730 2.3266 27 1 6.1563 3.0384 1.6624 28 1 6.1470 2.0171 3.8618 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.4437 -2.1651 1.3387 37 1 1.8184 -2.6510 0.3178 38 1 2.7227 -2.4348 2.9848 39 1 3.5316 -3.2394 4.4362 40 1 3.9762 -6.6919 6.6938 41 1 1.4060 -6.7887 3.2880 42 1 3.9903 -1.4819 0.8944 43 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715693801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:30 Heat of formation + Delta-G solvation = -164.293089 kcal Electronic energy + Delta-G solvation = -30228.926713 eV Core-core repulsion = 25472.577294 eV Total energy + Delta-G solvation = -4756.349419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.29709 -48.80540 -48.75579 -41.99135 -40.42864 -38.86078 -35.64230 -35.21788 -34.38529 -33.45238 -31.95632 -29.57928 -27.61701 -27.47818 -26.16534 -25.12350 -24.25261 -23.42093 -21.90276 -20.91377 -19.95376 -19.63493 -19.62289 -19.34112 -18.30395 -18.10849 -17.73534 -16.79195 -16.69356 -16.38464 -16.04228 -15.67867 -15.53345 -15.46718 -15.27514 -15.19331 -15.14448 -14.97585 -14.90150 -14.87449 -14.49402 -14.42348 -14.14563 -13.65008 -13.54331 -13.40143 -12.89935 -12.81485 -12.65954 -12.47613 -11.99666 -11.91839 -11.60048 -11.52282 -11.48342 -11.47239 -11.14788 -10.87779 -10.78706 -10.76784 -10.17222 -9.03851 -8.23327 -5.19838 -0.82186 -0.42483 1.38918 1.51687 1.64509 1.71398 1.86957 1.93806 2.36948 2.46865 2.76615 2.81104 3.00452 3.24449 3.37295 3.41845 3.49788 3.55235 3.71908 3.77357 3.83917 4.06051 4.22250 4.24209 4.37562 4.48376 4.55745 4.59879 4.68200 4.86815 4.91389 4.99516 5.00960 5.10597 5.19440 5.23464 5.39755 5.57985 5.71293 5.76455 6.31639 6.40329 6.61404 6.94425 7.16920 8.07072 8.19224 9.26740 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.002826 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.874042 B = 9906.443768 C =11606.492622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.134 4.134 4 C 0.177 3.823 5 H 0.058 0.942 6 C 0.120 3.880 7 N -0.702 5.702 8 C 0.562 3.438 9 O -0.569 6.569 10 C -0.194 4.194 11 C 0.173 3.827 12 N -0.492 5.492 13 C 0.182 3.818 14 C -0.248 4.248 15 C 0.528 3.472 16 F -0.175 7.175 17 F -0.167 7.167 18 F -0.175 7.175 19 C 0.032 3.968 20 N -0.739 5.739 21 C -0.303 4.303 22 H 0.071 0.929 23 C -0.099 4.099 24 N -0.979 5.979 25 Si 1.114 2.886 26 H -0.303 1.303 27 H -0.284 1.284 28 H -0.278 1.278 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.410 0.590 39 H 0.176 0.824 40 H 0.204 0.796 41 H 0.163 0.837 42 H 0.359 0.641 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.146 -10.591 8.518 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.068 3.932 5 H 0.076 0.924 6 C -0.004 4.004 7 N -0.353 5.353 8 C 0.349 3.651 9 O -0.450 6.450 10 C -0.199 4.199 11 C 0.016 3.984 12 N -0.200 5.200 13 C 0.024 3.976 14 C -0.252 4.252 15 C 0.473 3.527 16 F -0.156 7.156 17 F -0.148 7.148 18 F -0.157 7.157 19 C 0.006 3.994 20 N -0.381 5.381 21 C -0.435 4.435 22 H 0.089 0.911 23 C -0.290 4.290 24 N -0.628 5.628 25 Si 0.941 3.059 26 H -0.230 1.230 27 H -0.211 1.211 28 H -0.204 1.204 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.248 0.752 39 H 0.193 0.807 40 H 0.220 0.780 41 H 0.180 0.820 42 H 0.191 0.809 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.736 -9.703 8.945 16.400 hybrid contribution -1.393 -1.256 -1.085 2.167 sum -11.130 -10.959 7.860 17.485 Atomic orbital electron populations 1.21860 0.93799 1.02015 1.02232 1.21618 0.96030 0.96767 0.98335 1.21721 1.01614 0.95554 1.00233 1.20631 0.83470 0.92155 0.96916 0.92409 1.21747 0.98500 0.91965 0.88212 1.45895 1.48079 1.10493 1.30818 1.18057 0.80880 0.81952 0.84212 1.90755 1.37746 1.68395 1.48079 1.20864 1.03704 0.95888 0.99429 1.23528 0.87317 1.00619 0.86935 1.68036 1.23654 1.09181 1.19111 1.23415 0.88775 0.89191 0.96171 1.21046 1.07289 0.94641 1.02199 1.17743 0.74346 0.86114 0.74518 1.93258 1.66365 1.75519 1.80467 1.93223 1.95876 1.95323 1.30388 1.93222 1.38906 1.94289 1.89257 1.21573 0.92501 0.92502 0.92834 1.42595 1.01098 1.19929 1.74449 1.20179 0.91463 0.97508 1.34301 0.91100 1.26703 0.95006 1.04997 1.02341 1.71004 1.37649 1.07905 1.46207 0.82770 0.74479 0.72504 0.76118 1.22986 1.21111 1.20368 0.92177 0.92124 0.92095 0.93211 0.93329 0.93144 0.93498 0.89292 0.92657 0.75197 0.80688 0.77983 0.81972 0.80930 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.84 71.98 0.64 -2.69 16 2 C -0.11 -3.26 2.69 -10.79 -0.03 -3.29 16 3 C -0.13 -4.46 8.26 71.98 0.59 -3.86 16 4 C 0.18 5.87 2.18 44.99 0.10 5.96 16 5 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 6 C 0.12 3.58 4.73 86.38 0.41 3.99 16 7 N -0.70 -20.58 5.34 -465.99 -2.49 -23.06 16 8 C 0.56 16.76 7.78 86.78 0.68 17.43 16 9 O -0.57 -19.86 16.42 -3.86 -0.06 -19.92 16 10 C -0.19 -4.88 5.89 -19.99 -0.12 -4.99 16 11 C 0.17 4.19 10.71 85.04 0.91 5.10 16 12 N -0.49 -11.45 10.35 -194.75 -2.01 -13.46 16 13 C 0.18 3.34 10.56 84.69 0.89 4.24 16 14 C -0.25 -4.72 5.46 -19.81 -0.11 -4.83 16 15 C 0.53 9.20 3.38 71.23 0.24 9.44 16 16 F -0.17 -3.31 17.30 44.97 0.78 -2.53 16 17 F -0.17 -2.64 16.48 44.97 0.74 -1.90 16 18 F -0.18 -3.30 16.53 44.97 0.74 -2.56 16 19 C 0.03 0.72 9.06 22.73 0.21 0.92 16 20 N -0.74 -31.29 4.44 -322.95 -1.43 -32.72 16 21 C -0.30 -14.61 7.57 84.03 0.64 -13.97 16 22 H 0.07 3.35 7.40 -2.91 -0.02 3.33 16 23 C -0.10 -5.19 5.50 84.86 0.47 -4.73 16 24 N -0.98 -56.91 13.70 21.65 0.30 -56.62 16 25 Si 1.11 48.74 29.92 68.60 2.05 50.79 16 26 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 28 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.06 1.33 6.55 -2.39 -0.02 1.32 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.99 6.01 -2.39 -0.01 1.98 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 2.39 6.71 -2.38 -0.02 2.37 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.41 11.98 6.21 -92.71 -0.58 11.41 16 39 H 0.18 4.10 6.42 -2.91 -0.02 4.08 16 40 H 0.20 2.38 7.60 -2.91 -0.02 2.36 16 41 H 0.16 3.52 7.36 -2.91 -0.02 3.49 16 42 H 0.36 16.60 6.63 -92.71 -0.61 15.99 16 43 H 0.24 14.13 6.77 -92.71 -0.63 13.50 16 Total: -1.00 -61.69 368.98 4.16 -57.53 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: 0.04 Total: 35.71 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.51 Total: 8.74 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.64 Total: -125.86 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.06 Total: -19.92 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 2.26 Total: -6.99 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.05 Total: 50.79 kcal Total: -61.69 4.16 -57.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715693801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.764 kcal (2) G-P(sol) polarization free energy of solvation -61.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds