Wall clock time and date at job start Wed Apr 1 2020 03:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47218 * 2 1 4 4 C 1.53005 * 109.47275 * 119.99603 * 2 1 3 5 5 H 1.08996 * 109.47236 * 185.00117 * 4 2 1 6 6 C 1.53003 * 109.46752 * 64.99897 * 4 2 1 7 7 N 1.46502 * 109.46844 * 184.99944 * 6 4 2 8 8 C 1.34778 * 119.99973 * 179.97438 * 7 6 4 9 9 O 1.21548 * 119.99848 * 0.02562 * 8 7 6 10 10 C 1.47842 * 119.99830 * 180.02562 * 8 7 6 11 11 C 1.39562 * 120.56156 * 0.02562 * 10 8 7 12 12 N 1.31664 * 120.56097 * 180.02562 * 11 10 8 13 13 C 1.31954 * 121.88389 * 359.97438 * 12 11 10 14 14 C 1.38304 * 121.08168 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.34981 * 179.97438 * 14 13 12 16 16 F 1.39903 * 109.46901 * 0.02562 * 15 14 13 17 17 F 1.39900 * 109.47037 * 119.99718 * 15 14 13 18 18 F 1.39893 * 109.47127 * 239.99932 * 15 14 13 19 19 C 1.38401 * 119.30570 * 359.97438 * 14 13 12 20 20 N 1.46503 * 109.46789 * 305.00416 * 4 2 1 21 21 C 1.36938 * 119.99821 * 274.99769 * 20 4 2 22 22 H 1.07995 * 119.99887 * 359.97438 * 21 20 4 23 23 C 1.38816 * 119.99993 * 180.02562 * 21 20 4 24 24 N 1.31621 * 120.00026 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00084 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47184 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47170 * 119.99681 * 25 23 21 28 28 H 1.48505 * 109.46887 * 239.99782 * 25 23 21 29 29 H 1.08994 * 109.47386 * 300.00534 * 1 2 3 30 30 H 1.08998 * 109.46821 * 60.00326 * 1 2 3 31 31 H 1.08998 * 109.46681 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47751 * 239.99467 * 2 1 3 33 33 H 1.08994 * 109.47378 * 59.99461 * 3 2 1 34 34 H 1.08993 * 109.47108 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.46681 * 299.99511 * 3 2 1 36 36 H 1.08997 * 109.46820 * 65.00696 * 6 4 2 37 37 H 1.08992 * 109.47652 * 305.00155 * 6 4 2 38 38 H 0.96997 * 119.99988 * 0.02562 * 7 6 4 39 39 H 1.07994 * 119.71846 * 0.02562 * 11 10 8 40 40 H 1.08006 * 119.45764 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.85541 * 179.97438 * 19 14 13 42 42 H 0.96997 * 120.00052 * 94.99603 * 20 4 2 43 43 H 0.96992 * 120.00373 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6442 1.2952 6 6 1.6352 -2.1954 1.1881 7 7 2.0184 -2.8592 2.4366 8 6 1.7587 -4.1704 2.6099 9 8 1.2070 -4.8021 1.7302 10 6 2.1449 -4.8401 3.8701 11 6 2.7783 -4.1258 4.8881 12 7 3.1227 -4.7224 6.0102 13 6 2.8870 -6.0038 6.2191 14 6 2.2635 -6.7808 5.2597 15 6 2.0028 -8.2429 5.5154 16 9 2.4773 -8.5858 6.7861 17 9 0.6274 -8.4899 5.4494 18 9 2.6614 -9.0100 4.5486 19 6 1.8813 -6.2014 4.0623 20 7 1.4558 -0.1035 2.4424 21 6 2.0440 1.0004 2.9996 22 1 2.9388 1.4154 2.5599 23 6 1.4907 1.5854 4.1304 24 7 0.4005 1.0793 4.6667 25 14 2.2927 3.0917 4.8902 26 1 3.4970 3.4611 4.1037 27 1 1.3299 4.2221 4.8822 28 1 2.6892 2.7889 6.2889 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 2.1408 -2.6765 0.3509 37 1 0.5564 -2.2707 1.0528 38 1 2.4583 -2.3550 3.1388 39 1 2.9878 -3.0749 4.7543 40 1 3.1859 -6.4533 7.1546 41 1 1.3931 -6.7848 3.2956 42 1 0.6523 -0.4765 2.8376 43 1 0.0141 1.4878 5.4570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715693809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:34 Heat of formation + Delta-G solvation = -145.965645 kcal Electronic energy + Delta-G solvation = -30277.422133 eV Core-core repulsion = 25521.867451 eV Total energy + Delta-G solvation = -4755.554682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.48528 -48.01434 -47.92555 -40.93473 -39.17706 -37.37524 -34.27656 -33.39810 -32.98654 -32.38406 -30.24840 -28.15951 -26.72275 -26.44183 -24.96959 -23.58979 -23.30431 -22.11513 -20.64770 -19.28364 -18.80627 -18.79979 -18.57468 -17.44555 -17.29826 -16.98242 -16.57543 -15.50774 -15.42656 -14.93558 -14.75735 -14.67054 -14.37743 -14.35423 -14.19266 -14.12083 -14.08763 -13.98975 -13.58262 -13.47656 -13.28848 -13.17413 -13.01997 -12.50909 -12.29788 -12.02728 -11.36843 -11.08674 -11.01911 -10.87059 -10.68548 -10.50419 -10.35693 -10.33759 -10.16813 -9.97661 -9.76500 -9.73791 -9.54068 -9.01379 -8.82736 -7.11018 -5.89156 -3.18682 0.15660 0.55292 2.24575 2.65424 3.12569 3.32932 3.35237 3.41867 3.44188 3.44423 3.67920 3.95122 4.07348 4.28861 4.39819 4.47918 4.62391 4.77771 4.99778 5.27571 5.35202 5.40674 5.44184 5.57178 5.66767 5.76156 5.79258 5.95272 6.01944 6.14650 6.28491 6.32796 6.44813 6.55130 6.60753 6.74716 6.78536 7.01357 7.24024 7.34934 7.60909 7.63710 8.23505 8.28039 9.40510 9.93765 10.29891 11.32340 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.002796 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.874565 B =10012.116564 C =11509.826220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.167 3.833 5 H 0.055 0.945 6 C 0.111 3.889 7 N -0.701 5.701 8 C 0.560 3.440 9 O -0.542 6.542 10 C -0.181 4.181 11 C 0.173 3.827 12 N -0.477 5.477 13 C 0.170 3.830 14 C -0.253 4.253 15 C 0.520 3.480 16 F -0.174 7.174 17 F -0.172 7.172 18 F -0.173 7.173 19 C 0.032 3.968 20 N -0.719 5.719 21 C -0.239 4.239 22 H 0.074 0.926 23 C -0.008 4.008 24 N -0.927 5.927 25 Si 0.901 3.099 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.072 0.928 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.410 0.590 39 H 0.177 0.823 40 H 0.175 0.825 41 H 0.158 0.842 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 -15.075 -0.881 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.056 3.944 5 H 0.073 0.927 6 C -0.013 4.013 7 N -0.352 5.352 8 C 0.344 3.656 9 O -0.421 6.421 10 C -0.186 4.186 11 C 0.016 3.984 12 N -0.184 5.184 13 C 0.013 3.987 14 C -0.257 4.257 15 C 0.465 3.535 16 F -0.155 7.155 17 F -0.154 7.154 18 F -0.155 7.155 19 C 0.006 3.994 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.092 0.908 23 C -0.205 4.205 24 N -0.575 5.575 25 Si 0.732 3.268 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.248 0.752 39 H 0.194 0.806 40 H 0.192 0.808 41 H 0.176 0.824 42 H 0.220 0.780 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.780 -14.872 -0.805 15.642 hybrid contribution -0.228 0.348 0.309 0.518 sum 4.552 -14.524 -0.496 15.228 Atomic orbital electron populations 1.21777 0.95652 1.00626 1.01792 1.21609 0.96203 0.97207 0.97836 1.21841 0.99569 0.96330 1.02187 1.20570 0.97000 0.88175 0.88636 0.92706 1.21844 1.00940 0.93615 0.84870 1.45904 1.60104 1.08703 1.20480 1.17796 0.79471 0.82467 0.85827 1.90773 1.42977 1.65082 1.43292 1.21091 1.04845 0.94935 0.97729 1.23546 0.87569 1.00664 0.86647 1.67987 1.18711 1.09838 1.21862 1.22982 0.88985 0.89206 0.97550 1.20993 1.11029 0.93915 0.99755 1.17951 0.74481 0.86940 0.74160 1.93180 1.88310 1.93389 1.40659 1.93249 1.30912 1.95232 1.95972 1.93239 1.80937 1.77857 1.63432 1.21437 0.89706 0.93798 0.94468 1.42451 1.31931 1.33275 1.28427 1.19231 1.07163 1.03969 1.06655 0.90818 1.24712 0.97723 0.99422 0.98603 1.69656 1.21865 1.42216 1.23784 0.86223 0.78444 0.83024 0.79103 1.20557 1.21964 1.21897 0.90936 0.94367 0.93806 0.93212 0.89547 0.94125 0.94812 0.91503 0.90988 0.75230 0.80583 0.80843 0.82408 0.78035 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.74 37.16 0.32 -1.96 16 2 C -0.11 -1.69 2.74 -90.62 -0.25 -1.94 16 3 C -0.14 -2.37 8.46 37.16 0.31 -2.05 16 4 C 0.17 2.78 2.29 -67.93 -0.16 2.62 16 5 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 6 C 0.11 1.70 5.10 -4.04 -0.02 1.68 16 7 N -0.70 -10.33 5.34 -61.25 -0.33 -10.66 16 8 C 0.56 8.42 7.78 -12.33 -0.10 8.32 16 9 O -0.54 -9.58 16.42 5.32 0.09 -9.49 16 10 C -0.18 -2.32 5.89 -104.82 -0.62 -2.94 16 11 C 0.17 2.14 10.71 -17.13 -0.18 1.95 16 12 N -0.48 -5.85 10.35 -12.91 -0.13 -5.98 16 13 C 0.17 1.75 10.59 -17.47 -0.19 1.57 16 14 C -0.25 -2.64 5.38 -104.54 -0.56 -3.20 16 15 C 0.52 5.06 3.33 36.01 0.12 5.18 16 16 F -0.17 -1.58 15.99 2.25 0.04 -1.54 16 17 F -0.17 -1.82 17.24 2.25 0.04 -1.78 16 18 F -0.17 -1.76 17.24 2.25 0.04 -1.72 16 19 C 0.03 0.38 9.30 -38.87 -0.36 0.02 16 20 N -0.72 -14.82 3.53 -53.42 -0.19 -15.00 16 21 C -0.24 -5.63 7.75 -15.06 -0.12 -5.74 16 22 H 0.07 1.72 7.32 -52.49 -0.38 1.33 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -25.32 13.06 55.49 0.72 -24.59 16 25 Si 0.90 20.64 29.55 -169.99 -5.02 15.62 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.07 1.39 7.47 -51.93 -0.39 1.00 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.67 6.46 -51.93 -0.34 0.33 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 1.71 5.99 -51.93 -0.31 1.40 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.18 6.34 -51.93 -0.33 0.85 16 38 H 0.41 5.94 6.20 -40.82 -0.25 5.68 16 39 H 0.18 2.04 6.42 -52.49 -0.34 1.70 16 40 H 0.17 1.32 7.15 -52.48 -0.38 0.94 16 41 H 0.16 1.76 7.74 -52.49 -0.41 1.36 16 42 H 0.39 8.80 7.80 -40.82 -0.32 8.48 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -27.60 369.62 -6.17 -33.76 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -5.11 Total: 12.63 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.88 Total: 3.20 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.08 Total: -56.24 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 9 Polarization: -5.16 SS G_CDS: 0.11 Total: -5.05 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.60 -6.17 -33.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715693809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.201 kcal (2) G-P(sol) polarization free energy of solvation -27.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds