Wall clock time and date at job start Wed Apr 1 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47218 * 2 1 4 4 C 1.53005 * 109.47275 * 119.99603 * 2 1 3 5 5 H 1.08996 * 109.47236 * 185.00117 * 4 2 1 6 6 C 1.53003 * 109.46752 * 64.99897 * 4 2 1 7 7 N 1.46502 * 109.46844 * 184.99944 * 6 4 2 8 8 C 1.34778 * 119.99973 * 179.97438 * 7 6 4 9 9 O 1.21548 * 119.99848 * 0.02562 * 8 7 6 10 10 C 1.47842 * 119.99830 * 180.02562 * 8 7 6 11 11 C 1.39562 * 120.56156 * 0.02562 * 10 8 7 12 12 N 1.31664 * 120.56097 * 180.02562 * 11 10 8 13 13 C 1.31954 * 121.88389 * 359.97438 * 12 11 10 14 14 C 1.38304 * 121.08168 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.34981 * 179.97438 * 14 13 12 16 16 F 1.39903 * 109.46901 * 0.02562 * 15 14 13 17 17 F 1.39900 * 109.47037 * 119.99718 * 15 14 13 18 18 F 1.39893 * 109.47127 * 239.99932 * 15 14 13 19 19 C 1.38401 * 119.30570 * 359.97438 * 14 13 12 20 20 N 1.46503 * 109.46789 * 305.00416 * 4 2 1 21 21 C 1.36938 * 119.99821 * 274.99769 * 20 4 2 22 22 H 1.07995 * 119.99887 * 359.97438 * 21 20 4 23 23 C 1.38816 * 119.99993 * 180.02562 * 21 20 4 24 24 N 1.31621 * 120.00026 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00084 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47184 * 359.97438 * 25 23 21 27 27 H 1.48490 * 109.47170 * 119.99681 * 25 23 21 28 28 H 1.48505 * 109.46887 * 239.99782 * 25 23 21 29 29 H 1.08994 * 109.47386 * 300.00534 * 1 2 3 30 30 H 1.08998 * 109.46821 * 60.00326 * 1 2 3 31 31 H 1.08998 * 109.46681 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47751 * 239.99467 * 2 1 3 33 33 H 1.08994 * 109.47378 * 59.99461 * 3 2 1 34 34 H 1.08993 * 109.47108 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.46681 * 299.99511 * 3 2 1 36 36 H 1.08997 * 109.46820 * 65.00696 * 6 4 2 37 37 H 1.08992 * 109.47652 * 305.00155 * 6 4 2 38 38 H 0.96997 * 119.99988 * 0.02562 * 7 6 4 39 39 H 1.07994 * 119.71846 * 0.02562 * 11 10 8 40 40 H 1.08006 * 119.45764 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.85541 * 179.97438 * 19 14 13 42 42 H 0.96997 * 120.00052 * 94.99603 * 20 4 2 43 43 H 0.96992 * 120.00373 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6442 1.2952 6 6 1.6352 -2.1954 1.1881 7 7 2.0184 -2.8592 2.4366 8 6 1.7587 -4.1704 2.6099 9 8 1.2070 -4.8021 1.7302 10 6 2.1449 -4.8401 3.8701 11 6 2.7783 -4.1258 4.8881 12 7 3.1227 -4.7224 6.0102 13 6 2.8870 -6.0038 6.2191 14 6 2.2635 -6.7808 5.2597 15 6 2.0028 -8.2429 5.5154 16 9 2.4773 -8.5858 6.7861 17 9 0.6274 -8.4899 5.4494 18 9 2.6614 -9.0100 4.5486 19 6 1.8813 -6.2014 4.0623 20 7 1.4558 -0.1035 2.4424 21 6 2.0440 1.0004 2.9996 22 1 2.9388 1.4154 2.5599 23 6 1.4907 1.5854 4.1304 24 7 0.4005 1.0793 4.6667 25 14 2.2927 3.0917 4.8902 26 1 3.4970 3.4611 4.1037 27 1 1.3299 4.2221 4.8822 28 1 2.6892 2.7889 6.2889 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 2.1408 -2.6765 0.3509 37 1 0.5564 -2.2707 1.0528 38 1 2.4583 -2.3550 3.1388 39 1 2.9878 -3.0749 4.7543 40 1 3.1859 -6.4533 7.1546 41 1 1.3931 -6.7848 3.2956 42 1 0.6523 -0.4765 2.8376 43 1 0.0141 1.4878 5.4570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715693809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:33 Heat of formation + Delta-G solvation = -162.195860 kcal Electronic energy + Delta-G solvation = -30278.125928 eV Core-core repulsion = 25521.867451 eV Total energy + Delta-G solvation = -4756.258477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.27697 -48.78498 -48.73678 -41.92943 -40.34708 -38.77867 -35.52670 -34.72100 -34.34076 -33.38140 -31.89065 -29.56608 -27.78679 -27.57426 -26.20139 -25.17064 -24.23084 -23.41487 -21.78281 -20.46422 -19.78154 -19.60220 -19.59932 -19.11987 -18.24861 -18.01334 -17.64745 -16.82531 -16.63869 -16.28585 -15.87628 -15.64472 -15.51264 -15.44349 -15.16470 -15.13799 -14.97794 -14.94451 -14.87652 -14.65736 -14.48477 -14.44487 -14.09290 -13.75328 -13.41690 -13.38264 -12.89068 -12.79588 -12.67900 -12.37813 -12.13745 -11.91894 -11.87406 -11.53085 -11.43262 -11.31504 -11.14776 -10.86046 -10.75478 -10.72818 -10.05760 -8.90628 -7.83519 -5.09001 -0.76745 -0.37823 1.42021 1.51126 1.55174 1.58766 1.61100 2.02661 2.42963 2.49653 2.63195 2.84478 3.06729 3.26950 3.42026 3.46508 3.50911 3.61958 3.83291 3.92779 3.96583 4.12097 4.30452 4.38092 4.47024 4.52954 4.62975 4.71526 4.79137 4.98399 5.01180 5.06186 5.13510 5.24935 5.29972 5.36618 5.49191 5.63164 5.67952 5.84485 6.36919 6.40799 6.46577 7.04165 7.46176 8.17627 8.42437 9.39132 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.013420 B = 0.002796 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.874565 B =10012.116564 C =11509.826220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.139 4.139 4 C 0.168 3.832 5 H 0.061 0.939 6 C 0.118 3.882 7 N -0.699 5.699 8 C 0.562 3.438 9 O -0.571 6.571 10 C -0.192 4.192 11 C 0.174 3.826 12 N -0.493 5.493 13 C 0.179 3.821 14 C -0.249 4.249 15 C 0.528 3.472 16 F -0.167 7.167 17 F -0.177 7.177 18 F -0.175 7.175 19 C 0.032 3.968 20 N -0.721 5.721 21 C -0.209 4.209 22 H 0.080 0.920 23 C -0.067 4.067 24 N -0.964 5.964 25 Si 0.950 3.050 26 H -0.267 1.267 27 H -0.307 1.307 28 H -0.301 1.301 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.411 0.589 39 H 0.179 0.821 40 H 0.203 0.797 41 H 0.161 0.839 42 H 0.374 0.626 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.988 -16.038 -1.634 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.059 3.941 5 H 0.079 0.921 6 C -0.006 4.006 7 N -0.350 5.350 8 C 0.348 3.652 9 O -0.452 6.452 10 C -0.197 4.197 11 C 0.017 3.983 12 N -0.201 5.201 13 C 0.021 3.979 14 C -0.253 4.253 15 C 0.473 3.527 16 F -0.148 7.148 17 F -0.158 7.158 18 F -0.156 7.156 19 C 0.006 3.994 20 N -0.362 5.362 21 C -0.341 4.341 22 H 0.098 0.902 23 C -0.259 4.259 24 N -0.616 5.616 25 Si 0.783 3.217 26 H -0.191 1.191 27 H -0.235 1.235 28 H -0.229 1.229 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.249 0.751 39 H 0.196 0.804 40 H 0.220 0.780 41 H 0.178 0.822 42 H 0.206 0.794 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.167 -15.834 -1.596 17.067 hybrid contribution -0.605 0.572 0.465 0.954 sum 5.561 -15.262 -1.131 16.283 Atomic orbital electron populations 1.21696 0.95988 1.00804 1.00746 1.21583 0.95829 0.96899 0.98268 1.21770 1.00060 0.96518 1.01244 1.20717 0.96987 0.88865 0.87506 0.92097 1.21745 1.00442 0.92668 0.85709 1.45879 1.59942 1.08773 1.20395 1.18034 0.78701 0.82262 0.86163 1.90752 1.44409 1.65627 1.44455 1.20881 1.06332 0.95434 0.97083 1.23563 0.87322 1.00808 0.86626 1.68037 1.19423 1.10850 1.21759 1.23450 0.87600 0.88495 0.98307 1.21023 1.10631 0.94358 0.99246 1.17756 0.74240 0.86390 0.74345 1.93197 1.88184 1.93286 1.40140 1.93246 1.31322 1.95213 1.96014 1.93241 1.80935 1.77828 1.63580 1.21525 0.89397 0.93410 0.95064 1.42523 1.31408 1.32671 1.29552 1.19488 1.06109 1.03380 1.05140 0.90222 1.25235 0.98726 1.01918 1.00068 1.69785 1.23716 1.43708 1.24387 0.85402 0.77780 0.80481 0.78085 1.19142 1.23480 1.22870 0.94512 0.92802 0.93068 0.90196 0.93111 0.93263 0.93128 0.89775 0.92106 0.75066 0.80429 0.78022 0.82157 0.79391 0.94621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.74 71.98 0.63 -3.57 16 2 C -0.10 -3.07 2.74 -10.79 -0.03 -3.10 16 3 C -0.14 -4.33 8.46 71.98 0.61 -3.72 16 4 C 0.17 5.34 2.29 44.99 0.10 5.45 16 5 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 6 C 0.12 3.45 5.10 86.38 0.44 3.89 16 7 N -0.70 -20.17 5.34 -465.98 -2.49 -22.66 16 8 C 0.56 16.67 7.78 86.79 0.68 17.34 16 9 O -0.57 -19.93 16.42 -3.87 -0.06 -20.00 16 10 C -0.19 -4.83 5.89 -19.99 -0.12 -4.95 16 11 C 0.17 4.18 10.71 85.04 0.91 5.09 16 12 N -0.49 -11.46 10.35 -194.76 -2.01 -13.48 16 13 C 0.18 3.32 10.59 84.69 0.90 4.21 16 14 C -0.25 -4.78 5.38 -19.81 -0.11 -4.88 16 15 C 0.53 9.30 3.33 71.24 0.24 9.54 16 16 F -0.17 -2.63 15.99 44.97 0.72 -1.92 16 17 F -0.18 -3.47 17.24 44.97 0.78 -2.69 16 18 F -0.17 -3.25 17.24 44.97 0.78 -2.48 16 19 C 0.03 0.73 9.30 22.73 0.21 0.94 16 20 N -0.72 -29.56 3.53 -322.93 -1.14 -30.70 16 21 C -0.21 -9.76 7.75 84.03 0.65 -9.11 16 22 H 0.08 3.60 7.32 -2.91 -0.02 3.58 16 23 C -0.07 -3.44 5.50 84.86 0.47 -2.98 16 24 N -0.96 -53.99 13.06 21.65 0.28 -53.71 16 25 Si 0.95 42.94 29.55 68.60 2.03 44.97 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 28 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 29 H 0.04 1.40 7.47 -2.39 -0.02 1.38 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.50 6.46 -2.39 -0.02 1.48 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.95 5.99 -2.39 -0.01 1.94 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.39 8.14 -2.38 -0.02 1.38 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 1.94 6.34 -2.39 -0.02 1.92 16 38 H 0.41 11.73 6.20 -92.71 -0.58 11.15 16 39 H 0.18 4.08 6.42 -2.91 -0.02 4.06 16 40 H 0.20 2.48 7.15 -2.91 -0.02 2.46 16 41 H 0.16 3.48 7.74 -2.91 -0.02 3.45 16 42 H 0.37 17.30 7.80 -92.71 -0.72 16.58 16 43 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -59.00 369.62 4.24 -54.76 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: -0.21 Total: 33.74 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 5.58 Total: 14.15 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -5.36 Total: -120.55 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.06 Total: -20.00 kcal Atomic # 9 Polarization: -9.36 SS G_CDS: 2.27 Total: -7.08 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -59.00 4.24 -54.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715693809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.431 kcal (2) G-P(sol) polarization free energy of solvation -59.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds