Wall clock time and date at job start Wed Apr 1 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46827 * 2 1 4 4 N 1.46495 * 109.47260 * 239.99484 * 2 1 3 5 5 S 1.65606 * 119.99947 * 67.91511 * 4 2 1 6 6 C 1.81400 * 104.45049 * 70.79604 * 5 4 2 7 7 O 1.42097 * 104.27768 * 186.87043 * 5 4 2 8 8 O 1.42097 * 104.27352 * 314.72505 * 5 4 2 9 9 C 1.50709 * 109.46895 * 119.99598 * 2 1 3 10 10 O 1.21283 * 120.00025 * 265.00676 * 9 2 1 11 11 N 1.34774 * 119.99895 * 84.99754 * 9 2 1 12 12 C 1.46496 * 120.00150 * 179.97438 * 11 9 2 13 13 C 1.50699 * 109.47246 * 180.02562 * 12 11 9 14 14 C 1.29446 * 117.69615 * 95.00491 * 13 12 11 15 15 C 1.50326 * 123.65332 * 181.14192 * 14 13 12 16 16 N 1.47110 * 109.10650 * 348.53103 * 15 14 13 17 17 C 1.36931 * 121.51637 * 223.16227 * 16 15 14 18 18 H 1.07995 * 120.00148 * 157.31619 * 17 16 15 19 19 C 1.38816 * 119.99849 * 337.30969 * 17 16 15 20 20 N 1.31618 * 120.00008 * 342.99629 * 19 17 16 21 21 Si 1.86799 * 119.99765 * 162.99241 * 19 17 16 22 22 H 1.48500 * 109.46769 * 94.98761 * 21 19 17 23 23 H 1.48501 * 109.47165 * 214.98354 * 21 19 17 24 24 H 1.48497 * 109.47446 * 334.98611 * 21 19 17 25 25 C 1.47346 * 117.11031 * 43.34977 * 16 15 14 26 26 C 1.49970 * 117.69282 * 274.97778 * 13 12 11 27 27 H 1.08999 * 109.47865 * 286.42642 * 1 2 3 28 28 H 1.09000 * 109.47137 * 46.42819 * 1 2 3 29 29 H 1.09004 * 109.46936 * 166.42442 * 1 2 3 30 30 H 1.09004 * 109.46649 * 189.60890 * 3 2 1 31 31 H 1.08991 * 109.47234 * 309.60428 * 3 2 1 32 32 H 1.09004 * 109.47255 * 69.61422 * 3 2 1 33 33 H 0.97000 * 120.00119 * 247.90902 * 4 2 1 34 34 H 1.08996 * 109.47034 * 50.42550 * 6 5 4 35 35 H 1.08991 * 109.46912 * 170.42784 * 6 5 4 36 36 H 1.08999 * 109.46835 * 290.42383 * 6 5 4 37 37 H 0.97004 * 119.99945 * 0.02562 * 11 9 2 38 38 H 1.09000 * 109.47090 * 60.00838 * 12 11 9 39 39 H 1.08995 * 109.47199 * 300.00825 * 12 11 9 40 40 H 1.08001 * 118.17645 * 0.85301 * 14 13 12 41 41 H 1.08999 * 109.52227 * 108.64451 * 15 14 13 42 42 H 1.09005 * 109.51808 * 228.83528 * 15 14 13 43 43 H 0.96994 * 120.00098 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.77814 * 178.42732 * 25 16 15 45 45 H 1.09009 * 109.77513 * 57.62410 * 25 16 15 46 46 H 1.08997 * 109.31982 * 281.29101 * 26 13 12 47 47 H 1.09007 * 109.31541 * 40.71966 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 1.7860 -0.0201 -2.6923 6 6 2.9025 1.4092 -2.7262 7 8 2.2299 -1.0212 -3.5978 8 8 0.4305 0.4062 -2.6786 9 6 2.0323 -0.7104 1.2306 10 8 2.3206 -0.0748 2.2225 11 7 2.1609 -2.0520 1.2289 12 6 2.6497 -2.7425 2.4249 13 6 2.7008 -4.2257 2.1630 14 6 3.8277 -4.7293 1.7728 15 6 4.0226 -6.1845 1.4504 16 7 2.8472 -6.9410 1.9089 17 6 2.9760 -8.1404 2.5568 18 1 2.1808 -8.4981 3.1941 19 6 4.1287 -8.8967 2.3945 20 7 4.9406 -8.6510 1.3881 21 14 4.5274 -10.2629 3.6044 22 1 4.0287 -11.5565 3.0721 23 1 5.9979 -10.3406 3.7963 24 1 3.8727 -9.9779 4.9064 25 6 1.5232 -6.3543 1.6371 26 6 1.4427 -5.0143 2.3734 27 1 -0.3635 0.2906 0.9857 28 1 -0.3633 0.7083 -0.7446 29 1 -0.3633 -0.9990 -0.2412 30 1 3.1164 1.4473 -0.1716 31 1 1.5434 2.0034 -0.7917 32 1 1.8235 1.9044 0.9633 33 1 2.4779 -1.5407 -1.1116 34 1 3.9009 1.0976 -2.4195 35 1 2.9428 1.8148 -3.7370 36 1 2.5344 2.1739 -2.0423 37 1 1.9306 -2.5603 0.4355 38 1 1.9775 -2.5436 3.2595 39 1 3.6490 -2.3824 2.6694 40 1 4.6738 -4.0662 1.6689 41 1 4.1413 -6.3063 0.3738 42 1 4.9123 -6.5545 1.9601 43 1 5.7462 -9.1792 1.2749 44 1 0.7422 -7.0222 2.0003 45 1 1.4037 -6.1941 0.5655 46 1 1.3052 -5.1963 3.4392 47 1 0.5931 -4.4456 1.9951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725824952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:24 Heat of formation + Delta-G solvation = -56.146004 kcal Electronic energy + Delta-G solvation = -29223.668802 eV Core-core repulsion = 25149.309683 eV Total energy + Delta-G solvation = -4074.359118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.51135 -38.03160 -37.55212 -36.61348 -36.23438 -35.13960 -32.95868 -31.11605 -30.92106 -30.24884 -29.77579 -27.44467 -27.14102 -24.71610 -23.18634 -22.70192 -21.15068 -20.44149 -19.57583 -18.88436 -17.71903 -17.49996 -16.70345 -16.22809 -15.97188 -15.67910 -15.60241 -15.05625 -14.78453 -14.45553 -14.16562 -13.96352 -13.90016 -13.66414 -13.54337 -13.46945 -13.17777 -12.84770 -12.72861 -12.43005 -12.33557 -12.29941 -12.14241 -11.99395 -11.92569 -11.72181 -11.61738 -11.42475 -11.38188 -10.96914 -10.75575 -10.47148 -10.36232 -10.17169 -9.94574 -9.86390 -9.65293 -9.15575 -8.72554 -8.13556 -6.81219 -5.84184 -3.21248 -0.12594 2.09283 2.43617 2.53816 3.23826 3.35512 3.43004 3.45381 3.47190 3.77683 4.10931 4.31783 4.38699 4.46286 4.55615 4.60910 4.71951 5.00318 5.06982 5.25091 5.26481 5.32015 5.34406 5.50243 5.52459 5.53259 5.72597 5.77367 5.83147 5.99940 6.02005 6.09451 6.27234 6.28234 6.40650 6.44595 6.67763 6.81302 7.08579 7.18327 7.24207 7.38160 7.66851 7.76792 7.98811 8.32573 9.14618 9.77809 10.35285 11.26450 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.002500 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.967291 B =11198.814920 C =11867.190741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.167 3.833 3 C -0.181 4.181 4 N -1.114 6.114 5 S 2.614 3.386 6 C -0.687 4.687 7 O -0.953 6.953 8 O -0.949 6.949 9 C 0.520 3.480 10 O -0.534 6.534 11 N -0.714 5.714 12 C 0.156 3.844 13 C -0.169 4.169 14 C -0.121 4.121 15 C 0.192 3.808 16 N -0.595 5.595 17 C -0.246 4.246 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.143 3.857 26 C -0.090 4.090 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.420 0.580 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.402 0.598 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.095 0.905 43 H 0.254 0.746 44 H 0.057 0.943 45 H 0.023 0.977 46 H 0.065 0.935 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 22.496 -6.336 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 C -0.239 4.239 4 N -0.875 5.875 5 S 2.705 3.295 6 C -0.836 4.836 7 O -0.944 6.944 8 O -0.940 6.940 9 C 0.303 3.697 10 O -0.410 6.410 11 N -0.366 5.366 12 C 0.034 3.966 13 C -0.170 4.170 14 C -0.142 4.142 15 C 0.067 3.933 16 N -0.318 5.318 17 C -0.375 4.375 18 H 0.087 0.913 19 C -0.200 4.200 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.016 3.984 26 C -0.129 4.129 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.256 0.744 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.157 0.843 37 H 0.237 0.763 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.060 0.940 42 H 0.113 0.887 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.611 22.686 -6.292 24.202 hybrid contribution 1.065 -0.906 0.561 1.507 sum -4.546 21.780 -5.731 22.976 Atomic orbital electron populations 1.22510 0.90966 1.05152 1.04264 1.20385 0.96399 0.92662 0.83060 1.22692 1.02232 0.93400 1.05597 1.55909 1.74625 1.34340 1.22614 1.04818 0.75920 0.76221 0.72494 1.31024 1.18572 1.22111 1.11942 1.93655 1.83579 1.55515 1.61628 1.93607 1.31133 1.83758 1.85452 1.20269 0.77772 0.82656 0.88984 1.90726 1.49669 1.66055 1.34591 1.46261 1.66221 1.06512 1.17589 1.20526 0.99451 0.89980 0.86668 1.20491 0.97164 0.92682 1.06649 1.23301 0.95848 1.00339 0.94713 1.19801 0.92158 0.83604 0.97740 1.44169 0.99255 1.20818 1.67556 1.19178 1.03226 0.95362 1.19773 0.91282 1.24955 0.99416 0.98144 0.97444 1.70015 1.14717 1.42313 1.28357 0.86250 0.77466 0.81832 0.81080 1.21498 1.21560 1.20483 1.20960 0.89295 0.92117 0.96002 1.20757 0.93663 0.97263 1.01244 0.90938 0.88308 0.90914 0.90605 0.90848 0.88241 0.74446 0.85017 0.85367 0.84331 0.76262 0.91300 0.91404 0.88750 0.93986 0.88742 0.93593 0.92412 0.95874 0.91695 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 7.99 37.16 0.30 -1.15 16 2 C 0.17 1.41 1.04 -132.97 -0.14 1.27 16 3 C -0.18 -1.20 6.50 37.16 0.24 -0.96 16 4 N -1.11 -8.39 5.30 -0.40 0.00 -8.39 16 5 S 2.61 19.92 5.70 -107.50 -0.61 19.31 16 6 C -0.69 -2.82 9.45 101.05 0.96 -1.86 16 7 O -0.95 -11.09 18.08 -57.54 -1.04 -12.13 16 8 O -0.95 -9.41 15.03 -57.54 -0.86 -10.27 16 9 C 0.52 5.93 6.63 -10.98 -0.07 5.86 16 10 O -0.53 -7.76 15.89 5.56 0.09 -7.67 16 11 N -0.71 -8.14 5.26 -61.47 -0.32 -8.47 16 12 C 0.16 2.11 5.66 -5.20 -0.03 2.09 16 13 C -0.17 -2.70 5.22 -100.99 -0.53 -3.23 16 14 C -0.12 -2.17 9.47 -35.78 -0.34 -2.50 16 15 C 0.19 4.37 5.27 -5.04 -0.03 4.34 16 16 N -0.59 -14.43 3.01 -173.58 -0.52 -14.95 16 17 C -0.25 -6.61 9.71 -15.06 -0.15 -6.76 16 18 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 19 C 0.00 -0.05 4.99 -17.43 -0.09 -0.13 16 20 N -0.91 -25.70 11.08 55.49 0.62 -25.08 16 21 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.14 2.84 6.57 -3.53 -0.02 2.82 16 26 C -0.09 -1.49 5.95 -28.18 -0.17 -1.66 16 27 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 28 H 0.10 0.83 6.02 -51.93 -0.31 0.51 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.42 7.38 -51.93 -0.38 0.04 16 31 H 0.07 0.33 5.63 -51.93 -0.29 0.03 16 32 H 0.10 0.74 7.50 -51.93 -0.39 0.35 16 33 H 0.42 3.03 7.14 -34.47 -0.25 2.78 16 34 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.14 0.40 4.96 -51.92 -0.26 0.15 16 37 H 0.40 4.09 7.07 -40.82 -0.29 3.80 16 38 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 39 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16 40 H 0.09 1.49 7.73 -52.49 -0.41 1.08 16 41 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 2.42 6.36 -51.93 -0.33 2.09 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 45 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -34.74 379.60 -9.11 -43.84 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.07 Total: 3.58 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.06 Total: -1.88 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.23 Total: -56.89 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -1.82 Total: -30.07 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 19.92 SS G_CDS: -0.61 Total: 19.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.74 -9.11 -43.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725824952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.301 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds