Wall clock time and date at job start Wed Apr 1 2020 03:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46827 * 2 1 4 4 N 1.46495 * 109.47260 * 239.99484 * 2 1 3 5 5 S 1.65606 * 119.99947 * 67.91511 * 4 2 1 6 6 C 1.81400 * 104.45049 * 70.79604 * 5 4 2 7 7 O 1.42097 * 104.27768 * 186.87043 * 5 4 2 8 8 O 1.42097 * 104.27352 * 314.72505 * 5 4 2 9 9 C 1.50709 * 109.46895 * 119.99598 * 2 1 3 10 10 O 1.21283 * 120.00025 * 265.00676 * 9 2 1 11 11 N 1.34774 * 119.99895 * 84.99754 * 9 2 1 12 12 C 1.46496 * 120.00150 * 179.97438 * 11 9 2 13 13 C 1.50699 * 109.47246 * 180.02562 * 12 11 9 14 14 C 1.29446 * 117.69615 * 95.00491 * 13 12 11 15 15 C 1.50326 * 123.65332 * 181.14192 * 14 13 12 16 16 N 1.47110 * 109.10650 * 348.53103 * 15 14 13 17 17 C 1.36931 * 121.51637 * 223.16227 * 16 15 14 18 18 H 1.07995 * 120.00148 * 157.31619 * 17 16 15 19 19 C 1.38816 * 119.99849 * 337.30969 * 17 16 15 20 20 N 1.31618 * 120.00008 * 342.99629 * 19 17 16 21 21 Si 1.86799 * 119.99765 * 162.99241 * 19 17 16 22 22 H 1.48500 * 109.46769 * 94.98761 * 21 19 17 23 23 H 1.48501 * 109.47165 * 214.98354 * 21 19 17 24 24 H 1.48497 * 109.47446 * 334.98611 * 21 19 17 25 25 C 1.47346 * 117.11031 * 43.34977 * 16 15 14 26 26 C 1.49970 * 117.69282 * 274.97778 * 13 12 11 27 27 H 1.08999 * 109.47865 * 286.42642 * 1 2 3 28 28 H 1.09000 * 109.47137 * 46.42819 * 1 2 3 29 29 H 1.09004 * 109.46936 * 166.42442 * 1 2 3 30 30 H 1.09004 * 109.46649 * 189.60890 * 3 2 1 31 31 H 1.08991 * 109.47234 * 309.60428 * 3 2 1 32 32 H 1.09004 * 109.47255 * 69.61422 * 3 2 1 33 33 H 0.97000 * 120.00119 * 247.90902 * 4 2 1 34 34 H 1.08996 * 109.47034 * 50.42550 * 6 5 4 35 35 H 1.08991 * 109.46912 * 170.42784 * 6 5 4 36 36 H 1.08999 * 109.46835 * 290.42383 * 6 5 4 37 37 H 0.97004 * 119.99945 * 0.02562 * 11 9 2 38 38 H 1.09000 * 109.47090 * 60.00838 * 12 11 9 39 39 H 1.08995 * 109.47199 * 300.00825 * 12 11 9 40 40 H 1.08001 * 118.17645 * 0.85301 * 14 13 12 41 41 H 1.08999 * 109.52227 * 108.64451 * 15 14 13 42 42 H 1.09005 * 109.51808 * 228.83528 * 15 14 13 43 43 H 0.96994 * 120.00098 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.77814 * 178.42732 * 25 16 15 45 45 H 1.09009 * 109.77513 * 57.62410 * 25 16 15 46 46 H 1.08997 * 109.31982 * 281.29101 * 26 13 12 47 47 H 1.09007 * 109.31541 * 40.71966 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 1.7860 -0.0201 -2.6923 6 6 2.9025 1.4092 -2.7262 7 8 2.2299 -1.0212 -3.5978 8 8 0.4305 0.4062 -2.6786 9 6 2.0323 -0.7104 1.2306 10 8 2.3206 -0.0748 2.2225 11 7 2.1609 -2.0520 1.2289 12 6 2.6497 -2.7425 2.4249 13 6 2.7008 -4.2257 2.1630 14 6 3.8277 -4.7293 1.7728 15 6 4.0226 -6.1845 1.4504 16 7 2.8472 -6.9410 1.9089 17 6 2.9760 -8.1404 2.5568 18 1 2.1808 -8.4981 3.1941 19 6 4.1287 -8.8967 2.3945 20 7 4.9406 -8.6510 1.3881 21 14 4.5274 -10.2629 3.6044 22 1 4.0287 -11.5565 3.0721 23 1 5.9979 -10.3406 3.7963 24 1 3.8727 -9.9779 4.9064 25 6 1.5232 -6.3543 1.6371 26 6 1.4427 -5.0143 2.3734 27 1 -0.3635 0.2906 0.9857 28 1 -0.3633 0.7083 -0.7446 29 1 -0.3633 -0.9990 -0.2412 30 1 3.1164 1.4473 -0.1716 31 1 1.5434 2.0034 -0.7917 32 1 1.8235 1.9044 0.9633 33 1 2.4779 -1.5407 -1.1116 34 1 3.9009 1.0976 -2.4195 35 1 2.9428 1.8148 -3.7370 36 1 2.5344 2.1739 -2.0423 37 1 1.9306 -2.5603 0.4355 38 1 1.9775 -2.5436 3.2595 39 1 3.6490 -2.3824 2.6694 40 1 4.6738 -4.0662 1.6689 41 1 4.1413 -6.3063 0.3738 42 1 4.9123 -6.5545 1.9601 43 1 5.7462 -9.1792 1.2749 44 1 0.7422 -7.0222 2.0003 45 1 1.4037 -6.1941 0.5655 46 1 1.3052 -5.1963 3.4392 47 1 0.5931 -4.4456 1.9951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725824952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:24 Heat of formation + Delta-G solvation = -83.440142 kcal Electronic energy + Delta-G solvation = -29224.852364 eV Core-core repulsion = 25149.309683 eV Total energy + Delta-G solvation = -4075.542681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40482 -39.46439 -38.32985 -37.38138 -36.93183 -36.48699 -34.54407 -32.62532 -31.64788 -31.43247 -30.69832 -28.71977 -27.90432 -26.24676 -24.54964 -23.98347 -22.73144 -21.28150 -20.20103 -19.71314 -19.40264 -18.25070 -17.53407 -17.29522 -17.10488 -16.89366 -16.64555 -16.37393 -15.82579 -15.61043 -15.31720 -15.20777 -15.03447 -14.64489 -14.52037 -14.32893 -13.98583 -13.93666 -13.75885 -13.52398 -13.42746 -13.27757 -13.15391 -12.94415 -12.88996 -12.81075 -12.59996 -12.57623 -12.52015 -12.37187 -12.24217 -12.10959 -11.92605 -11.70606 -11.29540 -10.93029 -10.70429 -10.67323 -10.16953 -9.65617 -8.77381 -7.89345 -5.28598 -0.68139 1.14992 1.35616 1.46207 1.48139 1.57722 1.78868 2.25224 2.50918 2.91174 3.23810 3.27755 3.42003 3.60952 3.77115 3.87654 3.90326 3.94441 3.97418 4.14379 4.23188 4.43824 4.52208 4.57448 4.64438 4.73174 4.77091 4.82558 4.87326 4.89992 4.91534 5.00605 5.09037 5.19993 5.23519 5.33484 5.36957 5.40039 5.47838 5.60851 5.74681 5.80193 6.16091 6.32589 6.44454 7.07630 7.12682 7.82928 8.36343 9.19326 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.002500 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.967291 B =11198.814920 C =11867.190741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.174 3.826 3 C -0.188 4.188 4 N -1.114 6.114 5 S 2.618 3.382 6 C -0.668 4.668 7 O -0.999 6.999 8 O -0.977 6.977 9 C 0.523 3.477 10 O -0.563 6.563 11 N -0.710 5.710 12 C 0.166 3.834 13 C -0.142 4.142 14 C -0.139 4.139 15 C 0.202 3.798 16 N -0.615 5.615 17 C -0.257 4.257 18 H 0.070 0.930 19 C -0.054 4.054 20 N -0.938 5.938 21 Si 0.966 3.034 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.271 1.271 25 C 0.137 3.863 26 C -0.084 4.084 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.421 0.579 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.409 0.591 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.117 0.883 41 H 0.014 0.986 42 H 0.058 0.942 43 H 0.250 0.750 44 H 0.057 0.943 45 H 0.026 0.974 46 H 0.064 0.936 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 24.936 -6.008 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.082 3.918 3 C -0.246 4.246 4 N -0.874 5.874 5 S 2.714 3.286 6 C -0.822 4.822 7 O -0.990 6.990 8 O -0.968 6.968 9 C 0.308 3.692 10 O -0.441 6.441 11 N -0.362 5.362 12 C 0.043 3.957 13 C -0.143 4.143 14 C -0.160 4.160 15 C 0.077 3.923 16 N -0.339 5.339 17 C -0.387 4.387 18 H 0.088 0.912 19 C -0.249 4.249 20 N -0.585 5.585 21 Si 0.795 3.205 22 H -0.214 1.214 23 H -0.219 1.219 24 H -0.196 1.196 25 C 0.012 3.988 26 C -0.123 4.123 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.257 0.743 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.246 0.754 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.135 0.865 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.082 0.918 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.215 25.108 -5.973 26.547 hybrid contribution 1.155 -1.594 0.438 2.017 sum -5.060 23.514 -5.535 24.681 Atomic orbital electron populations 1.22540 0.91042 1.05002 1.04470 1.20347 0.96244 0.93437 0.81791 1.22817 1.03475 0.92024 1.06245 1.55788 1.74725 1.34695 1.22191 1.04495 0.75827 0.76633 0.71661 1.30850 1.17783 1.19569 1.13965 1.93599 1.84156 1.58269 1.62976 1.93567 1.33511 1.84095 1.85588 1.20703 0.76835 0.82225 0.89472 1.90719 1.50932 1.66554 1.35937 1.46135 1.66117 1.06796 1.17173 1.20289 0.99861 0.87953 0.87556 1.20617 0.96060 0.94138 1.03501 1.22958 0.97719 0.97617 0.97669 1.19456 0.90663 0.86497 0.95678 1.44455 1.01200 1.20618 1.67643 1.19505 1.03231 0.96261 1.19672 0.91223 1.25691 0.99587 1.00638 0.98995 1.70172 1.14968 1.43436 1.29906 0.85270 0.76800 0.79151 0.79301 1.21381 1.21901 1.19609 1.21146 0.87326 0.93708 0.96649 1.20688 0.95165 0.95699 1.00759 0.90757 0.87957 0.91423 0.89172 0.88480 0.88891 0.74344 0.83312 0.83415 0.82464 0.75421 0.90971 0.91302 0.86548 0.96828 0.92361 0.94126 0.92399 0.95606 0.91777 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 7.99 71.98 0.57 -2.05 16 2 C 0.17 2.56 1.04 2.86 0.00 2.57 16 3 C -0.19 -1.92 6.50 71.98 0.47 -1.46 16 4 N -1.11 -14.79 5.30 -155.19 -0.82 -15.61 16 5 S 2.62 35.63 5.70 -56.49 -0.32 35.30 16 6 C -0.67 -2.99 9.45 113.37 1.07 -1.91 16 7 O -1.00 -22.77 18.08 -127.65 -2.31 -25.08 16 8 O -0.98 -18.02 15.03 -127.65 -1.92 -19.94 16 9 C 0.52 10.81 6.63 87.66 0.58 11.39 16 10 O -0.56 -15.22 15.89 -3.04 -0.05 -15.27 16 11 N -0.71 -14.64 5.26 -466.80 -2.46 -17.10 16 12 C 0.17 4.12 5.66 85.63 0.48 4.61 16 13 C -0.14 -4.32 5.22 -15.13 -0.08 -4.40 16 14 C -0.14 -4.92 9.47 27.12 0.26 -4.66 16 15 C 0.20 9.52 5.27 85.40 0.45 9.97 16 16 N -0.62 -30.35 3.01 -703.09 -2.12 -32.47 16 17 C -0.26 -14.02 9.71 84.04 0.82 -13.20 16 18 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 19 C -0.05 -3.02 4.99 84.86 0.42 -2.59 16 20 N -0.94 -54.91 11.08 21.65 0.24 -54.67 16 21 Si 0.97 44.79 29.59 68.60 2.03 46.82 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 C 0.14 5.39 6.57 86.25 0.57 5.95 16 26 C -0.08 -2.62 5.95 29.65 0.18 -2.45 16 27 H 0.07 1.10 8.07 -2.39 -0.02 1.08 16 28 H 0.10 1.52 6.02 -2.39 -0.01 1.51 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 0.67 7.38 -2.38 -0.02 0.65 16 31 H 0.10 0.51 5.63 -2.39 -0.01 0.50 16 32 H 0.09 1.14 7.50 -2.38 -0.02 1.13 16 33 H 0.42 5.48 7.14 -96.74 -0.69 4.79 16 34 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.15 0.23 8.14 -2.40 -0.02 0.21 16 36 H 0.16 0.20 4.96 -2.39 -0.01 0.18 16 37 H 0.41 7.48 7.07 -92.71 -0.66 6.83 16 38 H 0.07 1.81 8.11 -2.39 -0.02 1.79 16 39 H 0.07 1.75 7.78 -2.39 -0.02 1.74 16 40 H 0.12 3.57 7.73 -2.91 -0.02 3.55 16 41 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 3.13 6.36 -2.38 -0.02 3.12 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 45 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.09 2.16 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -77.05 379.60 -2.28 -79.33 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.34 Total: 16.91 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.79 Total: 1.77 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -5.16 Total: -119.85 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -4.28 Total: -60.28 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 35.63 SS G_CDS: -0.32 Total: 35.30 kcal Total: -77.05 -2.28 -79.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725824952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.113 kcal (2) G-P(sol) polarization free energy of solvation -77.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds