Wall clock time and date at job start Wed Apr 1 2020 03:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47048 * 2 1 4 4 N 1.46497 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99555 * 269.99547 * 4 3 2 6 6 H 1.08003 * 120.00171 * 38.14169 * 5 4 3 7 7 C 1.38811 * 120.00040 * 218.13160 * 5 4 3 8 8 N 1.31617 * 119.99789 * 21.27955 * 7 5 4 9 9 Si 1.86803 * 120.00108 * 201.28153 * 7 5 4 10 10 H 1.48502 * 109.46947 * 60.00234 * 9 7 5 11 11 H 1.48496 * 109.47365 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47029 * 300.00337 * 9 7 5 13 13 C 1.46495 * 120.00436 * 89.99536 * 4 3 2 14 14 C 1.52994 * 109.47426 * 264.50300 * 13 4 3 15 15 N 1.46504 * 109.47290 * 179.97438 * 14 13 4 16 16 C 1.34772 * 120.00035 * 179.97438 * 15 14 13 17 17 O 1.21513 * 120.00157 * 0.02562 * 16 15 14 18 18 C 1.48170 * 120.00165 * 179.97438 * 16 15 14 19 19 C 1.39306 * 119.72523 * 180.27618 * 18 16 15 20 20 C 1.38594 * 119.05682 * 180.27727 * 19 18 16 21 21 C 1.38623 * 118.48964 * 359.45904 * 20 19 18 22 22 C 1.38556 * 119.35048 * 0.27646 * 21 20 19 23 23 C 1.50703 * 119.54563 * 179.97438 * 22 21 20 24 24 F 1.39898 * 109.46878 * 90.00683 * 23 22 21 25 25 F 1.39901 * 109.47154 * 209.99995 * 23 22 21 26 26 F 1.39896 * 109.47558 * 330.00429 * 23 22 21 27 27 N 1.31525 * 120.90629 * 0.02562 * 22 21 20 28 28 H 1.08999 * 109.47385 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47667 * 299.99857 * 1 2 3 30 30 H 1.09004 * 109.47621 * 60.00093 * 1 2 3 31 31 H 1.08996 * 109.47086 * 239.99942 * 2 1 3 32 32 H 1.08997 * 109.47238 * 119.99893 * 2 1 3 33 33 H 1.08996 * 109.47224 * 60.00027 * 3 2 1 34 34 H 1.08997 * 109.47014 * 300.00030 * 3 2 1 35 35 H 0.97002 * 119.99829 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47089 * 144.49842 * 13 4 3 37 37 H 1.09003 * 109.47252 * 24.50312 * 13 4 3 38 38 H 1.09003 * 109.47361 * 59.99708 * 14 13 4 39 39 H 1.08998 * 109.47003 * 299.99750 * 14 13 4 40 40 H 0.97002 * 119.99658 * 359.97438 * 15 14 13 41 41 H 1.07997 * 120.47333 * 0.03846 * 19 18 16 42 42 H 1.08003 * 120.75305 * 179.73639 * 20 19 18 43 43 H 1.08001 * 120.32538 * 180.30039 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1900 1.4425 1.1851 6 1 3.8233 0.8648 2.0207 7 6 5.3560 2.1848 1.3130 8 7 5.5890 3.1901 0.4960 9 14 6.5943 1.7570 2.6446 10 1 7.0746 0.3660 2.4453 11 1 7.7448 2.6928 2.5699 12 1 5.9480 1.8715 3.9767 13 6 4.2369 1.4427 -1.2696 14 6 4.6115 0.0069 -1.6424 15 7 5.3431 0.0070 -2.9117 16 6 5.7770 -1.1547 -3.4395 17 8 5.5612 -2.2022 -2.8627 18 6 6.5164 -1.1547 -4.7235 19 6 6.9573 -2.3593 -5.2667 20 6 7.6526 -2.3427 -6.4655 21 6 7.8729 -1.1225 -7.0852 22 6 7.4007 0.0364 -6.4905 23 6 7.6382 1.3654 -7.1601 24 9 6.5742 1.6496 -8.0228 25 9 7.7308 2.3674 -6.1882 26 9 8.8299 1.3130 -7.8910 27 7 6.7488 -0.0074 -5.3489 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8932 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 6.4036 3.7090 0.5857 36 1 5.1432 2.0395 -1.1662 37 1 3.6085 1.8690 -2.0516 38 1 3.7053 -0.5899 -1.7458 39 1 5.2400 -0.4193 -0.8605 40 1 5.5151 0.8432 -3.3723 41 1 6.7635 -3.2926 -4.7589 42 1 8.0107 -3.2601 -6.9090 43 1 8.4071 -1.0756 -8.0227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731870019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:12 Heat of formation + Delta-G solvation = -134.660302 kcal Electronic energy + Delta-G solvation = -30149.257210 eV Core-core repulsion = 25394.192765 eV Total energy + Delta-G solvation = -4755.064445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.40196 -47.96577 -47.80773 -41.00081 -38.93480 -36.49285 -34.43143 -33.25863 -32.87522 -32.59444 -30.76447 -28.30630 -27.00907 -25.56714 -25.15539 -23.39197 -22.83018 -21.16576 -20.67228 -20.11035 -18.93353 -18.79606 -18.71449 -17.62973 -16.69024 -16.51544 -16.22675 -15.46142 -15.27815 -14.97615 -14.75426 -14.63258 -14.36161 -14.34133 -14.30253 -14.09498 -13.99805 -13.97212 -13.76584 -13.51293 -13.10688 -12.96238 -12.78264 -12.57251 -12.36706 -11.59487 -11.50657 -11.17772 -10.94217 -10.72897 -10.56510 -10.54087 -10.46742 -10.34396 -10.09217 -9.90854 -9.86023 -9.83331 -9.63400 -8.60365 -8.48100 -6.61374 -5.81139 -3.43117 0.09926 0.50467 2.11370 2.49758 3.12978 3.28390 3.37230 3.42695 3.45957 3.46485 3.57863 4.10851 4.15899 4.36966 4.44270 4.45683 4.53649 4.83837 4.95600 5.28538 5.39103 5.47531 5.53614 5.65890 5.75442 5.88985 6.00995 6.10772 6.19429 6.29188 6.41264 6.51697 6.61404 6.66433 6.75969 6.96904 6.98463 7.04287 7.16767 7.56211 7.80932 7.83256 8.36928 8.49109 9.14815 9.76712 10.34804 11.17285 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.010527 B = 0.002948 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.142049 B = 9494.208697 C =10208.041879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.578 5.578 5 C -0.265 4.265 6 H 0.061 0.939 7 C 0.016 3.984 8 N -0.885 5.885 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.135 3.865 14 C 0.096 3.904 15 N -0.692 5.692 16 C 0.561 3.439 17 O -0.536 6.536 18 C 0.097 3.903 19 C -0.085 4.085 20 C -0.077 4.077 21 C -0.109 4.109 22 C 0.036 3.964 23 C 0.524 3.476 24 F -0.170 7.170 25 F -0.158 7.158 26 F -0.172 7.172 27 N -0.417 5.417 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.032 0.968 35 H 0.256 0.744 36 H 0.099 0.901 37 H 0.031 0.969 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.409 0.591 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 -8.077 -18.405 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.395 4.395 6 H 0.079 0.921 7 C -0.184 4.184 8 N -0.526 5.526 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.007 3.993 14 C -0.029 4.029 15 N -0.342 5.342 16 C 0.344 3.656 17 O -0.413 6.413 18 C -0.043 4.043 19 C -0.105 4.105 20 C -0.103 4.103 21 C -0.129 4.129 22 C -0.106 4.106 23 C 0.469 3.531 24 F -0.151 7.151 25 F -0.140 7.140 26 F -0.153 7.153 27 N -0.128 5.128 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.244 0.756 41 H 0.179 0.821 42 H 0.174 0.826 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.260 -7.813 -17.540 19.476 hybrid contribution 1.201 -0.401 -0.105 1.271 sum 4.461 -8.214 -17.645 19.968 Atomic orbital electron populations 1.21721 0.97324 1.00378 1.01042 1.22204 0.93850 1.01014 1.01473 1.20954 0.85023 0.92853 0.99050 1.43582 0.99409 1.85058 1.01757 1.18970 1.06241 1.22919 0.91357 0.92114 1.25191 1.00780 0.94582 0.97895 1.69958 1.26064 1.16928 1.39675 0.86488 0.81084 0.78023 0.81933 1.20791 1.21576 1.20579 1.21080 0.99762 0.91541 0.86911 1.22574 0.94989 1.02897 0.82439 1.46064 1.54794 1.08668 1.24644 1.17715 0.79729 0.84935 0.83263 1.90794 1.57842 1.31451 1.61187 1.21481 0.98374 0.88452 0.96039 1.22433 0.93345 0.99979 0.94771 1.21679 0.95973 0.98389 0.94246 1.22046 0.97792 0.92097 1.01001 1.20927 1.01831 0.93054 0.94749 1.17802 0.74193 0.84402 0.76716 1.93248 1.56553 1.94283 1.71019 1.93284 1.95720 1.62697 1.62253 1.93206 1.47219 1.96558 1.78361 1.67065 1.09527 1.29904 1.06345 0.93836 0.93189 0.93442 0.93029 0.92375 0.93231 0.94946 0.93380 0.88357 0.95022 0.92561 0.91201 0.75603 0.82143 0.82638 0.82917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.15 0.37 -1.79 16 2 C -0.15 -2.63 6.26 -26.73 -0.17 -2.80 16 3 C 0.15 3.06 5.71 -4.04 -0.02 3.03 16 4 N -0.58 -13.96 2.43 -173.24 -0.42 -14.38 16 5 C -0.27 -7.08 9.42 -15.06 -0.14 -7.23 16 6 H 0.06 1.63 7.92 -52.48 -0.42 1.22 16 7 C 0.02 0.44 5.00 -17.43 -0.09 0.36 16 8 N -0.88 -24.83 11.43 55.49 0.63 -24.20 16 9 Si 0.90 21.46 29.60 -169.99 -5.03 16.43 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.13 3.02 5.50 -4.05 -0.02 2.99 16 14 C 0.10 1.96 5.97 -4.04 -0.02 1.94 16 15 N -0.69 -12.30 5.55 -61.15 -0.34 -12.64 16 16 C 0.56 9.57 7.81 -12.18 -0.10 9.48 16 17 O -0.54 -10.44 16.32 5.35 0.09 -10.36 16 18 C 0.10 1.32 6.75 -83.01 -0.56 0.76 16 19 C -0.08 -0.86 9.63 -39.05 -0.38 -1.24 16 20 C -0.08 -0.54 10.17 -39.31 -0.40 -0.94 16 21 C -0.11 -0.85 9.44 -39.32 -0.37 -1.22 16 22 C 0.04 0.40 6.30 -82.60 -0.52 -0.12 16 23 C 0.52 5.71 3.43 36.01 0.12 5.84 16 24 F -0.17 -1.88 17.30 2.25 0.04 -1.84 16 25 F -0.16 -2.07 17.03 2.25 0.04 -2.03 16 26 F -0.17 -1.63 16.44 2.25 0.04 -1.59 16 27 N -0.42 -5.62 9.14 -6.06 -0.06 -5.67 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.95 6.65 -51.93 -0.35 0.60 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 34 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.10 2.50 5.53 -51.93 -0.29 2.21 16 37 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 38 H 0.06 1.15 6.65 -51.93 -0.35 0.81 16 39 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.41 6.81 7.80 -40.82 -0.32 6.49 16 41 H 0.16 1.48 7.64 -52.49 -0.40 1.08 16 42 H 0.16 0.51 8.06 -52.48 -0.42 0.08 16 43 H 0.15 0.73 7.60 -52.49 -0.40 0.33 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -30.51 378.46 -7.02 -37.53 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.42 Total: 3.98 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -2.30 Total: 9.07 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.18 Total: -56.89 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.11 Total: -5.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.51 -7.02 -37.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731870019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.128 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds