Wall clock time and date at job start Wed Apr 1 2020 03:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47048 * 2 1 4 4 N 1.46497 * 109.47150 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99555 * 269.99547 * 4 3 2 6 6 H 1.08003 * 120.00171 * 38.14169 * 5 4 3 7 7 C 1.38811 * 120.00040 * 218.13160 * 5 4 3 8 8 N 1.31617 * 119.99789 * 21.27955 * 7 5 4 9 9 Si 1.86803 * 120.00108 * 201.28153 * 7 5 4 10 10 H 1.48502 * 109.46947 * 60.00234 * 9 7 5 11 11 H 1.48496 * 109.47365 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47029 * 300.00337 * 9 7 5 13 13 C 1.46495 * 120.00436 * 89.99536 * 4 3 2 14 14 C 1.52994 * 109.47426 * 264.50300 * 13 4 3 15 15 N 1.46504 * 109.47290 * 179.97438 * 14 13 4 16 16 C 1.34772 * 120.00035 * 179.97438 * 15 14 13 17 17 O 1.21513 * 120.00157 * 0.02562 * 16 15 14 18 18 C 1.48170 * 120.00165 * 179.97438 * 16 15 14 19 19 C 1.39306 * 119.72523 * 180.27618 * 18 16 15 20 20 C 1.38594 * 119.05682 * 180.27727 * 19 18 16 21 21 C 1.38623 * 118.48964 * 359.45904 * 20 19 18 22 22 C 1.38556 * 119.35048 * 0.27646 * 21 20 19 23 23 C 1.50703 * 119.54563 * 179.97438 * 22 21 20 24 24 F 1.39898 * 109.46878 * 90.00683 * 23 22 21 25 25 F 1.39901 * 109.47154 * 209.99995 * 23 22 21 26 26 F 1.39896 * 109.47558 * 330.00429 * 23 22 21 27 27 N 1.31525 * 120.90629 * 0.02562 * 22 21 20 28 28 H 1.08999 * 109.47385 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47667 * 299.99857 * 1 2 3 30 30 H 1.09004 * 109.47621 * 60.00093 * 1 2 3 31 31 H 1.08996 * 109.47086 * 239.99942 * 2 1 3 32 32 H 1.08997 * 109.47238 * 119.99893 * 2 1 3 33 33 H 1.08996 * 109.47224 * 60.00027 * 3 2 1 34 34 H 1.08997 * 109.47014 * 300.00030 * 3 2 1 35 35 H 0.97002 * 119.99829 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47089 * 144.49842 * 13 4 3 37 37 H 1.09003 * 109.47252 * 24.50312 * 13 4 3 38 38 H 1.09003 * 109.47361 * 59.99708 * 14 13 4 39 39 H 1.08998 * 109.47003 * 299.99750 * 14 13 4 40 40 H 0.97002 * 119.99658 * 359.97438 * 15 14 13 41 41 H 1.07997 * 120.47333 * 0.03846 * 19 18 16 42 42 H 1.08003 * 120.75305 * 179.73639 * 20 19 18 43 43 H 1.08001 * 120.32538 * 180.30039 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1900 1.4425 1.1851 6 1 3.8233 0.8648 2.0207 7 6 5.3560 2.1848 1.3130 8 7 5.5890 3.1901 0.4960 9 14 6.5943 1.7570 2.6446 10 1 7.0746 0.3660 2.4453 11 1 7.7448 2.6928 2.5699 12 1 5.9480 1.8715 3.9767 13 6 4.2369 1.4427 -1.2696 14 6 4.6115 0.0069 -1.6424 15 7 5.3431 0.0070 -2.9117 16 6 5.7770 -1.1547 -3.4395 17 8 5.5612 -2.2022 -2.8627 18 6 6.5164 -1.1547 -4.7235 19 6 6.9573 -2.3593 -5.2667 20 6 7.6526 -2.3427 -6.4655 21 6 7.8729 -1.1225 -7.0852 22 6 7.4007 0.0364 -6.4905 23 6 7.6382 1.3654 -7.1601 24 9 6.5742 1.6496 -8.0228 25 9 7.7308 2.3674 -6.1882 26 9 8.8299 1.3130 -7.8910 27 7 6.7488 -0.0074 -5.3489 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8932 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 6.4036 3.7090 0.5857 36 1 5.1432 2.0395 -1.1662 37 1 3.6085 1.8690 -2.0516 38 1 3.7053 -0.5899 -1.7458 39 1 5.2400 -0.4193 -0.8605 40 1 5.5151 0.8432 -3.3723 41 1 6.7635 -3.2926 -4.7589 42 1 8.0107 -3.2601 -6.9090 43 1 8.4071 -1.0756 -8.0227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731870019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:11 Heat of formation + Delta-G solvation = -153.270773 kcal Electronic energy + Delta-G solvation = -30150.064221 eV Core-core repulsion = 25394.192765 eV Total energy + Delta-G solvation = -4755.871456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.25620 -48.78168 -48.72406 -41.93364 -40.22705 -38.26345 -35.91288 -34.62994 -34.02276 -33.53418 -32.55058 -29.92316 -27.86154 -27.35324 -26.29495 -24.81367 -23.72915 -22.69651 -22.11117 -21.70201 -19.96357 -19.64488 -19.61573 -18.86243 -18.33308 -17.35011 -17.24684 -17.04302 -16.62777 -16.59275 -15.97615 -15.74725 -15.64352 -15.50434 -15.33386 -15.15550 -15.02070 -14.87741 -14.86793 -14.75411 -14.49396 -14.30013 -14.19300 -13.84722 -13.36840 -13.15527 -13.06776 -12.92037 -12.66125 -12.52343 -12.26116 -12.04257 -11.88649 -11.73489 -11.65325 -11.31782 -11.26732 -10.90968 -10.70519 -10.55541 -10.11241 -8.60646 -7.84954 -5.51569 -0.71454 -0.24753 1.28185 1.42757 1.45902 1.46681 1.52219 1.94518 2.36900 2.43041 2.48483 2.72207 3.18676 3.23723 3.27120 3.63370 3.67950 3.77061 3.81853 4.06402 4.20069 4.22183 4.30959 4.35338 4.49630 4.67291 4.69460 4.78078 4.83711 4.85348 4.98831 5.12410 5.20964 5.22373 5.25435 5.30269 5.43419 5.61907 5.62698 5.72923 6.11078 6.42177 6.49208 6.99224 7.13665 7.80684 8.33636 9.08770 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.010527 B = 0.002948 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.142049 B = 9494.208697 C =10208.041879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.145 3.855 4 N -0.595 5.595 5 C -0.273 4.273 6 H 0.054 0.946 7 C -0.027 4.027 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.271 1.271 13 C 0.142 3.858 14 C 0.120 3.880 15 N -0.696 5.696 16 C 0.561 3.439 17 O -0.566 6.566 18 C 0.067 3.933 19 C -0.081 4.081 20 C -0.054 4.054 21 C -0.089 4.089 22 C 0.018 3.982 23 C 0.526 3.474 24 F -0.172 7.172 25 F -0.177 7.177 26 F -0.161 7.161 27 N -0.446 5.446 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.253 0.747 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.037 0.963 40 H 0.413 0.587 41 H 0.168 0.832 42 H 0.207 0.793 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.167 -9.830 -20.608 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.403 4.403 6 H 0.072 0.928 7 C -0.225 4.225 8 N -0.554 5.554 9 Si 0.778 3.222 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.197 1.197 13 C 0.015 3.985 14 C -0.006 4.006 15 N -0.346 5.346 16 C 0.346 3.654 17 O -0.446 6.446 18 C -0.072 4.072 19 C -0.102 4.102 20 C -0.079 4.079 21 C -0.108 4.108 22 C -0.124 4.124 23 C 0.471 3.529 24 F -0.153 7.153 25 F -0.158 7.158 26 F -0.142 7.142 27 N -0.157 5.157 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.249 0.751 41 H 0.185 0.815 42 H 0.224 0.776 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.782 -9.569 -19.758 22.277 hybrid contribution 1.049 0.125 0.449 1.147 sum 4.831 -9.444 -19.309 22.031 Atomic orbital electron populations 1.21654 0.94237 1.01836 1.01965 1.22019 0.96445 0.98577 1.00365 1.21075 0.83215 0.94666 0.99079 1.43813 1.00871 1.85393 1.01514 1.19142 1.06762 1.22288 0.92116 0.92799 1.25786 1.02167 0.94646 0.99903 1.70069 1.26257 1.17829 1.41199 0.85624 0.79102 0.77267 0.80202 1.21155 1.21614 1.19677 1.20908 0.98650 0.92159 0.86777 1.22016 0.94487 1.01167 0.82946 1.45941 1.55206 1.09576 1.23840 1.18248 0.78985 0.83852 0.84302 1.90756 1.59048 1.32207 1.62559 1.20951 1.00828 0.90104 0.95304 1.22635 0.92987 0.98708 0.95851 1.22220 0.93527 0.99960 0.92237 1.22540 0.95759 0.90903 1.01618 1.21118 1.02656 0.94095 0.94525 1.17844 0.74435 0.84144 0.76483 1.93241 1.56764 1.94319 1.71012 1.93246 1.95834 1.63606 1.63117 1.93223 1.46509 1.96483 1.78007 1.66831 1.10779 1.30367 1.07758 0.92122 0.92606 0.92202 0.93527 0.94084 0.94194 0.93791 0.93758 0.91185 0.93741 0.92547 0.94496 0.75072 0.81477 0.77620 0.79095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.12 16 2 C -0.13 -4.83 6.26 30.59 0.19 -4.64 16 3 C 0.14 6.06 5.71 86.38 0.49 6.55 16 4 N -0.60 -29.54 2.43 -702.02 -1.71 -31.24 16 5 C -0.27 -14.98 9.42 84.03 0.79 -14.19 16 6 H 0.05 2.98 7.92 -2.91 -0.02 2.96 16 7 C -0.03 -1.48 5.00 84.86 0.42 -1.06 16 8 N -0.91 -52.61 11.43 21.65 0.25 -52.36 16 9 Si 0.95 45.09 29.60 68.60 2.03 47.12 16 10 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.14 6.62 5.50 86.38 0.47 7.09 16 14 C 0.12 5.13 5.97 86.38 0.52 5.64 16 15 N -0.70 -25.85 5.55 -465.67 -2.58 -28.43 16 16 C 0.56 19.72 7.81 86.88 0.68 20.40 16 17 O -0.57 -22.71 16.32 -3.76 -0.06 -22.77 16 18 C 0.07 1.81 6.75 41.91 0.28 2.09 16 19 C -0.08 -1.47 9.63 22.61 0.22 -1.25 16 20 C -0.05 -0.51 10.17 22.45 0.23 -0.28 16 21 C -0.09 -1.00 9.44 22.44 0.21 -0.79 16 22 C 0.02 0.36 6.30 42.68 0.27 0.63 16 23 C 0.53 10.83 3.43 71.24 0.24 11.07 16 24 F -0.17 -3.62 17.30 44.97 0.78 -2.84 16 25 F -0.18 -4.65 17.03 44.97 0.77 -3.88 16 26 F -0.16 -2.68 16.44 44.97 0.74 -1.94 16 27 N -0.45 -11.87 9.14 -173.08 -1.58 -13.46 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.47 8.14 -2.38 -0.02 1.46 16 30 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.05 1.71 6.65 -2.39 -0.02 1.69 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 34 H 0.04 1.72 7.86 -2.39 -0.02 1.70 16 35 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 36 H 0.07 3.72 5.53 -2.39 -0.01 3.71 16 37 H 0.04 1.91 7.83 -2.39 -0.02 1.89 16 38 H 0.06 2.39 6.65 -2.39 -0.02 2.38 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.41 14.51 7.80 -92.71 -0.72 13.79 16 41 H 0.17 2.76 7.64 -2.91 -0.02 2.74 16 42 H 0.21 -0.07 8.06 -2.91 -0.02 -0.10 16 43 H 0.19 0.71 7.60 -2.91 -0.02 0.69 16 Total: -1.00 -69.55 378.46 4.70 -64.85 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.34 Total: 16.80 kcal Atomic # 6 Polarization: 22.41 SS G_CDS: 5.74 Total: 28.15 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -5.62 Total: -125.49 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 9 Polarization: -10.95 SS G_CDS: 2.28 Total: -8.66 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.55 4.70 -64.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731870019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.424 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds