Wall clock time and date at job start Wed Apr 1 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47762 * 2 1 4 4 C 1.53001 * 109.47323 * 120.00470 * 2 1 3 5 5 H 1.08999 * 109.46634 * 299.99878 * 4 2 1 6 6 C 1.52994 * 109.47323 * 179.97438 * 4 2 1 7 7 N 1.46506 * 109.47055 * 184.99976 * 6 4 2 8 8 C 1.34775 * 119.99804 * 180.02562 * 7 6 4 9 9 O 1.21507 * 120.00260 * 359.97438 * 8 7 6 10 10 C 1.48174 * 119.99701 * 179.97438 * 8 7 6 11 11 N 1.32745 * 119.72189 * 359.97438 * 10 8 7 12 12 C 1.31498 * 121.64339 * 180.02562 * 11 10 8 13 13 C 1.38609 * 120.89848 * 0.02562 * 12 11 10 14 14 C 1.38584 * 119.34933 * 359.67525 * 13 12 11 15 15 C 1.38629 * 118.48907 * 0.58500 * 14 13 12 16 16 C 1.50703 * 120.46944 * 179.71089 * 15 14 13 17 17 F 1.39905 * 109.47157 * 359.72248 * 16 15 14 18 18 F 1.39900 * 109.47159 * 239.72549 * 16 15 14 19 19 F 1.39897 * 109.47274 * 119.72240 * 16 15 14 20 20 N 1.46500 * 109.47245 * 59.99355 * 4 2 1 21 21 C 1.36936 * 120.00357 * 275.00597 * 20 4 2 22 22 H 1.08003 * 119.99976 * 359.97438 * 21 20 4 23 23 C 1.38805 * 120.00065 * 180.02562 * 21 20 4 24 24 N 1.31621 * 119.99919 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00246 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47194 * 90.00435 * 25 23 21 27 27 H 1.48500 * 109.47539 * 210.00189 * 25 23 21 28 28 H 1.48497 * 109.47099 * 330.00104 * 25 23 21 29 29 H 1.08999 * 109.47166 * 299.99977 * 1 2 3 30 30 H 1.08998 * 109.47049 * 59.99555 * 1 2 3 31 31 H 1.09005 * 109.47338 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46967 * 239.99589 * 2 1 3 33 33 H 1.08995 * 109.47779 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47024 * 300.00725 * 3 2 1 35 35 H 1.09004 * 109.47216 * 59.99741 * 3 2 1 36 36 H 1.08992 * 109.47562 * 65.00007 * 6 4 2 37 37 H 1.09005 * 109.47184 * 304.99001 * 6 4 2 38 38 H 0.96992 * 120.00054 * 359.97438 * 7 6 4 39 39 H 1.07996 * 119.55101 * 180.02562 * 12 11 10 40 40 H 1.07999 * 120.31863 * 179.97438 * 13 12 11 41 41 H 1.07999 * 120.75349 * 180.31813 * 14 13 12 42 42 H 0.96997 * 119.99807 * 95.00490 * 20 4 2 43 43 H 0.97000 * 119.99934 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1391 6 6 3.5699 -0.7219 1.2489 7 7 4.0582 -1.5143 2.3803 8 6 5.3833 -1.6556 2.5820 9 8 6.1729 -1.1262 1.8253 10 6 5.8771 -2.4565 3.7267 11 7 5.0095 -3.0320 4.5502 12 6 5.4059 -3.7504 5.5778 13 6 6.7546 -3.9335 5.8404 14 6 7.6944 -3.3553 5.0019 15 6 7.2475 -2.5987 3.9297 16 6 8.2307 -1.9444 2.9936 17 9 9.5346 -2.2351 3.4091 18 9 8.0353 -0.5592 3.0058 19 9 8.0351 -2.4316 1.6969 20 7 1.5516 -2.1025 1.2492 21 6 0.3100 -2.3898 1.7503 22 1 -0.3090 -1.5982 2.1460 23 6 -0.1525 -3.6985 1.7508 24 7 -1.3457 -3.9747 2.2330 25 14 0.9184 -5.0679 1.0672 26 1 1.7604 -5.6277 2.1548 27 1 0.0553 -6.1392 0.5082 28 1 1.7909 -4.5254 -0.0051 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.9337 0.3016 1.3383 37 1 3.9329 -1.1566 0.3175 38 1 3.4279 -1.9365 2.9846 39 1 4.6707 -4.2038 6.2260 40 1 7.0697 -4.5250 6.6872 41 1 8.7510 -3.4876 5.1823 42 1 2.1077 -2.8136 0.8942 43 1 -1.6690 -4.8892 2.2330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732574972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:21 Heat of formation + Delta-G solvation = -134.986319 kcal Electronic energy + Delta-G solvation = -31473.578869 eV Core-core repulsion = 26718.500286 eV Total energy + Delta-G solvation = -4755.078582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.05409 -47.64141 -47.37164 -40.97698 -39.13716 -37.38499 -34.30620 -33.29076 -33.13455 -32.35729 -30.81936 -28.46700 -26.61795 -26.22148 -25.08838 -23.52111 -22.74175 -21.78799 -20.68906 -19.60323 -18.83764 -18.52579 -18.34132 -18.03122 -17.23826 -16.82504 -15.69313 -15.65699 -15.51529 -15.08042 -14.60496 -14.34970 -14.31102 -14.07894 -14.01718 -13.91649 -13.86661 -13.59557 -13.54107 -13.41254 -13.29732 -12.95627 -12.85815 -12.45983 -12.16930 -12.08409 -11.64312 -11.25649 -11.09039 -10.88487 -10.69735 -10.58037 -10.38600 -10.23402 -10.16046 -10.03422 -9.80804 -9.78006 -9.49204 -8.94976 -8.80862 -7.33703 -5.81416 -3.17264 0.07267 0.56378 2.54559 2.56377 3.04579 3.34485 3.38994 3.43276 3.44478 3.59252 3.89592 3.95031 4.33910 4.42501 4.45906 4.55257 4.65325 4.85734 5.01034 5.13413 5.23459 5.37249 5.42924 5.47027 5.58404 5.68199 5.75202 5.88769 5.96043 6.05248 6.17739 6.28808 6.38475 6.46543 6.57019 6.58664 6.77413 7.00332 7.22474 7.33738 7.69670 7.94093 8.22991 8.36695 9.14514 9.87104 10.06023 11.36201 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003921 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.172727 B = 7139.379884 C = 8687.197859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.175 3.825 5 H 0.064 0.936 6 C 0.107 3.893 7 N -0.686 5.686 8 C 0.552 3.448 9 O -0.525 6.525 10 C 0.139 3.861 11 N -0.447 5.447 12 C 0.132 3.868 13 C -0.156 4.156 14 C -0.037 4.037 15 C -0.191 4.191 16 C 0.524 3.476 17 F -0.187 7.187 18 F -0.161 7.161 19 F -0.161 7.161 20 N -0.746 5.746 21 C -0.239 4.239 22 H 0.095 0.905 23 C 0.010 3.990 24 N -0.931 5.931 25 Si 0.877 3.123 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.421 0.579 39 H 0.176 0.824 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.362 0.638 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.363 3.101 6.613 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.207 4.207 4 C 0.065 3.935 5 H 0.082 0.918 6 C -0.017 4.017 7 N -0.337 5.337 8 C 0.335 3.665 9 O -0.402 6.402 10 C -0.001 4.001 11 N -0.158 5.158 12 C -0.027 4.027 13 C -0.176 4.176 14 C -0.063 4.063 15 C -0.196 4.196 16 C 0.469 3.531 17 F -0.168 7.168 18 F -0.142 7.142 19 F -0.142 7.142 20 N -0.389 5.389 21 C -0.369 4.369 22 H 0.113 0.887 23 C -0.186 4.186 24 N -0.578 5.578 25 Si 0.708 3.292 26 H -0.211 1.211 27 H -0.219 1.219 28 H -0.204 1.204 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.260 0.740 39 H 0.193 0.807 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.195 0.805 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.759 3.634 5.966 19.083 hybrid contribution 1.361 -1.451 -0.145 1.995 sum 19.120 2.183 5.822 20.106 Atomic orbital electron populations 1.21822 0.94332 1.04267 0.99237 1.21694 0.97341 0.94531 0.99420 1.21942 1.00418 0.97169 1.01210 1.20537 0.88861 0.87254 0.96865 0.91792 1.21944 0.95945 0.95345 0.88429 1.45852 1.06090 1.51237 1.30550 1.17814 0.83738 0.81141 0.83853 1.90863 1.55133 1.48182 1.46010 1.21205 0.88607 0.95234 0.95006 1.67883 1.37483 1.07004 1.03420 1.23238 0.95061 0.91813 0.92597 1.22435 0.93944 1.00482 1.00736 1.21508 1.01896 0.91825 0.91065 1.21063 0.94543 1.04360 0.99603 1.17641 0.78238 0.77461 0.79760 1.93142 1.40030 1.93397 1.90237 1.93243 1.94725 1.29868 1.96383 1.93252 1.94710 1.87552 1.38660 1.42844 1.18596 1.02566 1.74897 1.19034 0.91400 0.94089 1.32377 0.88711 1.24618 0.96345 0.96801 1.00879 1.69690 1.17651 1.19122 1.51336 0.86669 0.80197 0.83250 0.79101 1.21122 1.21895 1.20422 0.93743 0.94958 0.89278 0.91968 0.93048 0.93385 0.92977 0.90613 0.91391 0.74011 0.80701 0.82907 0.82672 0.80530 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.26 37.15 0.31 -2.20 16 2 C -0.11 -1.77 2.69 -90.63 -0.24 -2.02 16 3 C -0.15 -2.02 8.84 37.15 0.33 -1.70 16 4 C 0.17 3.09 2.18 -67.93 -0.15 2.94 16 5 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 6 C 0.11 1.73 4.73 -4.04 -0.02 1.71 16 7 N -0.69 -11.40 5.38 -61.15 -0.33 -11.73 16 8 C 0.55 9.22 7.62 -12.18 -0.09 9.13 16 9 O -0.53 -9.57 11.27 5.36 0.06 -9.51 16 10 C 0.14 2.03 6.73 -83.01 -0.56 1.47 16 11 N -0.45 -6.08 9.54 -9.79 -0.09 -6.17 16 12 C 0.13 1.25 11.18 -17.56 -0.20 1.06 16 13 C -0.16 -1.12 10.11 -39.32 -0.40 -1.52 16 14 C -0.04 -0.33 9.53 -39.31 -0.37 -0.70 16 15 C -0.19 -2.40 5.41 -104.09 -0.56 -2.96 16 16 C 0.52 7.21 2.78 36.01 0.10 7.31 16 17 F -0.19 -2.17 16.06 2.25 0.04 -2.13 16 18 F -0.16 -2.47 15.01 2.25 0.03 -2.44 16 19 F -0.16 -2.55 15.02 2.25 0.03 -2.51 16 20 N -0.75 -16.04 4.24 -53.43 -0.23 -16.27 16 21 C -0.24 -6.12 8.05 -15.06 -0.12 -6.24 16 22 H 0.10 2.60 7.63 -52.48 -0.40 2.20 16 23 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 24 N -0.93 -27.79 13.97 55.49 0.78 -27.01 16 25 Si 0.88 21.43 27.73 -169.99 -4.71 16.72 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.92 6.01 -51.93 -0.31 1.61 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.13 6.71 -51.93 -0.35 0.78 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.42 7.30 7.47 -40.82 -0.30 6.99 16 39 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.16 0.94 7.26 -52.49 -0.38 0.56 16 42 H 0.36 8.00 5.66 -40.82 -0.23 7.77 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -31.30 361.22 -6.34 -37.64 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.29 Total: 11.53 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -2.08 Total: 6.45 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.13 Total: -61.18 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.06 Total: -9.51 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 0.10 Total: -7.08 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.30 -6.34 -37.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732574972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.347 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds