Wall clock time and date at job start Wed Apr 1 2020 03:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47762 * 2 1 4 4 C 1.53001 * 109.47323 * 120.00470 * 2 1 3 5 5 H 1.08999 * 109.46634 * 299.99878 * 4 2 1 6 6 C 1.52994 * 109.47323 * 179.97438 * 4 2 1 7 7 N 1.46506 * 109.47055 * 184.99976 * 6 4 2 8 8 C 1.34775 * 119.99804 * 180.02562 * 7 6 4 9 9 O 1.21507 * 120.00260 * 359.97438 * 8 7 6 10 10 C 1.48174 * 119.99701 * 179.97438 * 8 7 6 11 11 N 1.32745 * 119.72189 * 359.97438 * 10 8 7 12 12 C 1.31498 * 121.64339 * 180.02562 * 11 10 8 13 13 C 1.38609 * 120.89848 * 0.02562 * 12 11 10 14 14 C 1.38584 * 119.34933 * 359.67525 * 13 12 11 15 15 C 1.38629 * 118.48907 * 0.58500 * 14 13 12 16 16 C 1.50703 * 120.46944 * 179.71089 * 15 14 13 17 17 F 1.39905 * 109.47157 * 359.72248 * 16 15 14 18 18 F 1.39900 * 109.47159 * 239.72549 * 16 15 14 19 19 F 1.39897 * 109.47274 * 119.72240 * 16 15 14 20 20 N 1.46500 * 109.47245 * 59.99355 * 4 2 1 21 21 C 1.36936 * 120.00357 * 275.00597 * 20 4 2 22 22 H 1.08003 * 119.99976 * 359.97438 * 21 20 4 23 23 C 1.38805 * 120.00065 * 180.02562 * 21 20 4 24 24 N 1.31621 * 119.99919 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00246 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47194 * 90.00435 * 25 23 21 27 27 H 1.48500 * 109.47539 * 210.00189 * 25 23 21 28 28 H 1.48497 * 109.47099 * 330.00104 * 25 23 21 29 29 H 1.08999 * 109.47166 * 299.99977 * 1 2 3 30 30 H 1.08998 * 109.47049 * 59.99555 * 1 2 3 31 31 H 1.09005 * 109.47338 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46967 * 239.99589 * 2 1 3 33 33 H 1.08995 * 109.47779 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47024 * 300.00725 * 3 2 1 35 35 H 1.09004 * 109.47216 * 59.99741 * 3 2 1 36 36 H 1.08992 * 109.47562 * 65.00007 * 6 4 2 37 37 H 1.09005 * 109.47184 * 304.99001 * 6 4 2 38 38 H 0.96992 * 120.00054 * 359.97438 * 7 6 4 39 39 H 1.07996 * 119.55101 * 180.02562 * 12 11 10 40 40 H 1.07999 * 120.31863 * 179.97438 * 13 12 11 41 41 H 1.07999 * 120.75349 * 180.31813 * 14 13 12 42 42 H 0.96997 * 119.99807 * 95.00490 * 20 4 2 43 43 H 0.97000 * 119.99934 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1391 6 6 3.5699 -0.7219 1.2489 7 7 4.0582 -1.5143 2.3803 8 6 5.3833 -1.6556 2.5820 9 8 6.1729 -1.1262 1.8253 10 6 5.8771 -2.4565 3.7267 11 7 5.0095 -3.0320 4.5502 12 6 5.4059 -3.7504 5.5778 13 6 6.7546 -3.9335 5.8404 14 6 7.6944 -3.3553 5.0019 15 6 7.2475 -2.5987 3.9297 16 6 8.2307 -1.9444 2.9936 17 9 9.5346 -2.2351 3.4091 18 9 8.0353 -0.5592 3.0058 19 9 8.0351 -2.4316 1.6969 20 7 1.5516 -2.1025 1.2492 21 6 0.3100 -2.3898 1.7503 22 1 -0.3090 -1.5982 2.1460 23 6 -0.1525 -3.6985 1.7508 24 7 -1.3457 -3.9747 2.2330 25 14 0.9184 -5.0679 1.0672 26 1 1.7604 -5.6277 2.1548 27 1 0.0553 -6.1392 0.5082 28 1 1.7909 -4.5254 -0.0051 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.9337 0.3016 1.3383 37 1 3.9329 -1.1566 0.3175 38 1 3.4279 -1.9365 2.9846 39 1 4.6707 -4.2038 6.2260 40 1 7.0697 -4.5250 6.6872 41 1 8.7510 -3.4876 5.1823 42 1 2.1077 -2.8136 0.8942 43 1 -1.6690 -4.8892 2.2330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732574972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:20 Heat of formation + Delta-G solvation = -156.148714 kcal Electronic energy + Delta-G solvation = -31474.496539 eV Core-core repulsion = 26718.500286 eV Total energy + Delta-G solvation = -4755.996253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.10528 -48.66414 -48.49936 -41.90695 -40.30861 -38.85137 -35.56962 -34.95378 -34.20021 -33.21411 -32.66511 -29.90026 -27.70089 -27.47321 -26.14450 -25.05335 -23.77850 -23.20519 -21.92051 -21.03347 -20.01816 -19.54720 -19.42075 -19.40914 -18.65438 -17.79488 -17.12810 -16.75173 -16.52380 -16.44588 -15.90897 -15.57168 -15.41702 -15.37668 -15.09399 -14.97460 -14.96304 -14.90487 -14.71923 -14.67713 -14.57320 -14.24238 -14.12958 -14.00852 -13.49746 -12.97759 -12.96160 -12.93172 -12.85339 -12.49998 -12.33454 -11.95869 -11.78106 -11.55187 -11.44302 -11.37761 -11.33986 -10.90305 -10.77896 -10.59078 -10.10862 -9.27325 -7.94869 -5.26549 -0.79607 -0.17097 1.38693 1.40058 1.45443 1.53763 1.56480 1.92373 2.50575 2.51349 2.63109 2.94362 3.02896 3.35881 3.40410 3.50906 3.58867 3.73739 3.82405 3.84118 4.13928 4.22469 4.26643 4.29292 4.40379 4.59750 4.66517 4.71265 4.82954 4.90188 4.94867 5.02944 5.15524 5.23135 5.27215 5.31619 5.43069 5.61502 5.76517 5.87252 6.25604 6.27989 6.56118 6.96560 7.12884 7.87304 8.05798 9.26230 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003921 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.172727 B = 7139.379884 C = 8687.197859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.141 4.141 4 C 0.176 3.824 5 H 0.059 0.941 6 C 0.116 3.884 7 N -0.692 5.692 8 C 0.547 3.453 9 O -0.548 6.548 10 C 0.108 3.892 11 N -0.479 5.479 12 C 0.120 3.880 13 C -0.123 4.123 14 C -0.035 4.035 15 C -0.199 4.199 16 C 0.521 3.479 17 F -0.174 7.174 18 F -0.175 7.175 19 F -0.178 7.178 20 N -0.746 5.746 21 C -0.202 4.202 22 H 0.070 0.930 23 C -0.054 4.054 24 N -0.980 5.980 25 Si 0.936 3.064 26 H -0.281 1.281 27 H -0.303 1.303 28 H -0.265 1.265 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.417 0.583 39 H 0.203 0.797 40 H 0.204 0.796 41 H 0.187 0.813 42 H 0.361 0.639 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.901 2.857 7.717 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.125 4.125 3 C -0.199 4.199 4 C 0.067 3.933 5 H 0.077 0.923 6 C -0.007 4.007 7 N -0.342 5.342 8 C 0.332 3.668 9 O -0.426 6.426 10 C -0.030 4.030 11 N -0.190 5.190 12 C -0.038 4.038 13 C -0.142 4.142 14 C -0.060 4.060 15 C -0.204 4.204 16 C 0.466 3.534 17 F -0.155 7.155 18 F -0.156 7.156 19 F -0.159 7.159 20 N -0.389 5.389 21 C -0.333 4.333 22 H 0.088 0.912 23 C -0.245 4.245 24 N -0.632 5.632 25 Si 0.766 3.234 26 H -0.208 1.208 27 H -0.231 1.231 28 H -0.191 1.191 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.255 0.745 39 H 0.220 0.780 40 H 0.221 0.779 41 H 0.204 0.796 42 H 0.194 0.806 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.349 3.434 7.054 21.809 hybrid contribution 0.622 -1.304 -0.388 1.496 sum 20.971 2.130 6.665 22.108 Atomic orbital electron populations 1.21717 0.95568 1.01738 1.00090 1.21593 0.96100 0.96566 0.98264 1.21857 1.01105 0.94737 1.02225 1.20678 0.90039 0.85167 0.97381 0.92337 1.21836 0.94290 0.96236 0.88387 1.45866 1.06328 1.51491 1.30506 1.18243 0.83301 0.80927 0.84376 1.90833 1.55461 1.49230 1.47106 1.20843 0.89559 0.97167 0.95476 1.67804 1.38210 1.08238 1.04737 1.23873 0.97200 0.91011 0.91746 1.22958 0.92320 0.98294 1.00657 1.21966 1.03862 0.90489 0.89656 1.21093 0.93343 1.05375 1.00628 1.17849 0.79160 0.76940 0.79482 1.93156 1.39163 1.93222 1.89971 1.93206 1.94897 1.31112 1.96415 1.93209 1.94905 1.87683 1.40120 1.42827 1.17157 1.04388 1.74527 1.18933 0.91923 0.93003 1.29424 0.91210 1.25194 0.97539 0.99092 1.02711 1.69840 1.19790 1.19151 1.54377 0.85699 0.78565 0.80388 0.78760 1.20755 1.23056 1.19060 0.94162 0.92864 0.93352 0.92097 0.91883 0.91886 0.92502 0.89071 0.91795 0.74536 0.78046 0.77942 0.79610 0.80618 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.26 71.98 0.59 -4.18 16 2 C -0.10 -3.29 2.69 -10.80 -0.03 -3.32 16 3 C -0.14 -3.50 8.84 71.98 0.64 -2.87 16 4 C 0.18 6.14 2.18 44.99 0.10 6.24 16 5 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 6 C 0.12 3.68 4.73 86.38 0.41 4.09 16 7 N -0.69 -23.02 5.38 -465.66 -2.50 -25.52 16 8 C 0.55 18.38 7.62 86.88 0.66 19.04 16 9 O -0.55 -20.15 11.27 -3.74 -0.04 -20.19 16 10 C 0.11 3.09 6.73 41.90 0.28 3.37 16 11 N -0.48 -12.46 9.54 -184.90 -1.76 -14.23 16 12 C 0.12 1.92 11.18 84.83 0.95 2.87 16 13 C -0.12 -1.19 10.11 22.44 0.23 -0.97 16 14 C -0.03 -0.48 9.53 22.45 0.21 -0.27 16 15 C -0.20 -4.72 5.41 -19.52 -0.11 -4.83 16 16 C 0.52 13.95 2.78 71.24 0.20 14.15 16 17 F -0.17 -3.74 16.06 44.97 0.72 -3.02 16 18 F -0.18 -5.37 15.01 44.97 0.68 -4.69 16 19 F -0.18 -5.65 15.02 44.97 0.68 -4.98 16 20 N -0.75 -32.18 4.24 -322.95 -1.37 -33.55 16 21 C -0.20 -10.54 8.05 84.03 0.68 -9.87 16 22 H 0.07 3.97 7.63 -2.91 -0.02 3.95 16 23 C -0.05 -3.03 5.50 84.86 0.47 -2.56 16 24 N -0.98 -60.45 13.97 21.65 0.30 -60.15 16 25 Si 0.94 45.01 27.73 68.60 1.90 46.91 16 26 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 27 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 28 H -0.27 -11.99 6.52 99.48 0.65 -11.34 16 29 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 2.12 6.01 -2.38 -0.01 2.10 16 32 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.06 1.43 6.54 -2.39 -0.02 1.42 16 34 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 2.62 6.71 -2.39 -0.02 2.60 16 37 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.42 14.58 7.47 -92.71 -0.69 13.89 16 39 H 0.20 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.20 -0.02 8.06 -2.91 -0.02 -0.04 16 41 H 0.19 1.39 7.26 -2.91 -0.02 1.36 16 42 H 0.36 15.83 5.66 -92.71 -0.52 15.30 16 43 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -71.56 361.22 3.68 -67.89 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: -0.20 Total: 30.62 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 5.28 Total: 20.91 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -5.34 Total: -133.44 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.04 Total: -20.19 kcal Atomic # 9 Polarization: -14.77 SS G_CDS: 2.07 Total: -12.69 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Total: -71.56 3.68 -67.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732574972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.263 kcal (2) G-P(sol) polarization free energy of solvation -71.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds