Wall clock time and date at job start Wed Apr 1 2020 03:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46738 * 2 1 4 4 N 1.46500 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99779 * 275.31451 * 4 3 2 6 6 H 1.07990 * 120.00048 * 37.57353 * 5 4 3 7 7 C 1.38810 * 119.99485 * 217.57444 * 5 4 3 8 8 N 1.31623 * 120.00310 * 21.42927 * 7 5 4 9 9 Si 1.86792 * 120.00024 * 201.42383 * 7 5 4 10 10 H 1.48506 * 109.47232 * 90.00132 * 9 7 5 11 11 H 1.48499 * 109.47268 * 210.00059 * 9 7 5 12 12 H 1.48507 * 109.47103 * 330.00434 * 9 7 5 13 13 C 1.46500 * 119.99787 * 95.31014 * 4 3 2 14 14 C 1.53000 * 109.47071 * 270.00142 * 13 4 3 15 15 N 1.46500 * 109.47071 * 180.02562 * 14 13 4 16 16 C 1.34780 * 120.00018 * 179.97438 * 15 14 13 17 17 O 1.21509 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.48167 * 119.99934 * 180.02562 * 16 15 14 19 19 C 1.39305 * 119.72498 * 180.02562 * 18 16 15 20 20 C 1.38591 * 119.06140 * 180.27585 * 19 18 16 21 21 C 1.50703 * 120.75531 * 179.70112 * 20 19 18 22 22 F 1.39898 * 109.46979 * 89.99885 * 21 20 19 23 23 F 1.39892 * 109.46910 * 209.99851 * 21 20 19 24 24 F 1.39901 * 109.46857 * 329.99761 * 21 20 19 25 25 C 1.38624 * 118.48472 * 359.45557 * 20 19 18 26 26 C 1.38558 * 119.35523 * 0.52158 * 25 20 19 27 27 N 1.31529 * 120.90017 * 359.74855 * 26 25 20 28 28 H 1.09002 * 109.47487 * 60.00204 * 1 2 3 29 29 H 1.09010 * 109.46842 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47500 * 299.99428 * 1 2 3 31 31 H 1.08999 * 109.47023 * 240.00787 * 2 1 3 32 32 H 1.08995 * 109.47107 * 119.99760 * 2 1 3 33 33 H 1.09001 * 109.46658 * 60.00056 * 3 2 1 34 34 H 1.08997 * 109.47238 * 300.00517 * 3 2 1 35 35 H 0.96990 * 120.00421 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46753 * 150.00518 * 13 4 3 37 37 H 1.09003 * 109.46858 * 30.00411 * 13 4 3 38 38 H 1.08999 * 109.47523 * 59.99958 * 14 13 4 39 39 H 1.09005 * 109.47035 * 300.00099 * 14 13 4 40 40 H 0.97005 * 119.99749 * 0.02562 * 15 14 13 41 41 H 1.07998 * 120.46604 * 359.97438 * 19 18 16 42 42 H 1.08005 * 120.32282 * 180.27453 * 25 20 19 43 43 H 1.07995 * 119.54903 * 179.76300 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1891 1.3331 1.1818 6 1 3.8168 0.6877 1.9635 7 6 5.3611 2.0516 1.3742 8 7 5.6018 3.1243 0.6504 9 14 6.5966 1.4963 2.6603 10 1 7.5669 0.5575 2.0419 11 1 7.3217 2.6778 3.1929 12 1 5.8835 0.8121 3.7688 13 6 4.2379 1.5600 -1.2624 14 6 4.4932 0.1645 -1.8354 15 7 5.2267 0.2818 -3.0981 16 6 5.5645 -0.8265 -3.7866 17 8 5.2603 -1.9229 -3.3603 18 6 6.3069 -0.7079 -5.0634 19 6 6.6527 -1.8572 -5.7707 20 6 7.3521 -1.7306 -6.9605 21 6 7.7514 -2.9486 -7.7530 22 9 6.7363 -3.2673 -8.6614 23 9 8.9349 -2.6837 -8.4503 24 9 7.9537 -4.0253 -6.8830 25 6 7.6714 -0.4578 -7.4074 26 6 7.2949 0.6415 -6.6527 27 7 6.6364 0.4923 -5.5239 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 6.4205 3.6266 0.7850 36 1 5.1902 2.0596 -1.0847 37 1 3.6490 2.1419 -1.9715 38 1 3.5409 -0.3352 -2.0130 39 1 5.0820 -0.4173 -1.1262 40 1 5.4699 1.1571 -3.4382 41 1 6.3839 -2.8333 -5.3946 42 1 8.2118 -0.3245 -8.3330 43 1 7.5454 1.6343 -6.9960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753148247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:16 Heat of formation + Delta-G solvation = -136.196036 kcal Electronic energy + Delta-G solvation = -29711.200247 eV Core-core repulsion = 24956.069208 eV Total energy + Delta-G solvation = -4755.131040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.60718 -48.11888 -48.06407 -40.97589 -38.92853 -36.51258 -34.52315 -33.79134 -32.87916 -31.98406 -30.78464 -28.29649 -27.20756 -25.58079 -24.97034 -23.45027 -23.10308 -21.13176 -20.68494 -20.15574 -19.03432 -18.94672 -18.90904 -17.32963 -16.64043 -16.46108 -16.42383 -15.45651 -15.31130 -15.02062 -14.95927 -14.85757 -14.68862 -14.48540 -14.36930 -14.23356 -14.20514 -14.12030 -13.78618 -13.63028 -13.01819 -12.80675 -12.73394 -12.62582 -12.53649 -11.59009 -11.53707 -11.20638 -10.95092 -10.76741 -10.75300 -10.49905 -10.44111 -10.36971 -10.10639 -9.90609 -9.86876 -9.71604 -9.62536 -8.63435 -8.48360 -6.64571 -5.85259 -3.44463 0.10331 0.41000 2.08429 2.54286 3.08150 3.21853 3.35028 3.42381 3.44276 3.49535 3.54753 3.88154 3.93344 4.27449 4.39172 4.44121 4.49159 4.92909 5.07134 5.20698 5.25698 5.34804 5.46908 5.65888 5.75341 5.92843 6.00339 6.08376 6.17909 6.27338 6.40257 6.50518 6.60845 6.64670 6.75423 6.96136 6.97205 7.16809 7.20671 7.51996 7.78961 7.82214 8.36257 8.46512 9.12492 9.74353 10.32121 11.14745 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.002462 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.222658 B =11369.551208 C =12301.738298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.262 4.262 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.897 3.103 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.137 3.863 14 C 0.094 3.906 15 N -0.692 5.692 16 C 0.560 3.440 17 O -0.535 6.535 18 C 0.096 3.904 19 C -0.070 4.070 20 C -0.147 4.147 21 C 0.513 3.487 22 F -0.171 7.171 23 F -0.172 7.172 24 F -0.169 7.169 25 C -0.108 4.108 26 C 0.106 3.894 27 N -0.432 5.432 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.255 0.745 36 H 0.100 0.900 37 H 0.030 0.970 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.409 0.591 41 H 0.162 0.838 42 H 0.154 0.846 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 -6.126 -19.237 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.392 4.392 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.528 5.528 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.010 3.990 14 C -0.031 4.031 15 N -0.342 5.342 16 C 0.342 3.658 17 O -0.412 6.412 18 C -0.043 4.043 19 C -0.090 4.090 20 C -0.156 4.156 21 C 0.459 3.541 22 F -0.152 7.152 23 F -0.154 7.154 24 F -0.150 7.150 25 C -0.129 4.129 26 C -0.053 4.053 27 N -0.143 5.143 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.117 0.883 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.244 0.756 41 H 0.180 0.820 42 H 0.171 0.829 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.867 -6.039 -18.346 19.526 hybrid contribution 1.245 -0.880 -0.275 1.549 sum 4.112 -6.919 -18.622 20.287 Atomic orbital electron populations 1.21723 0.97335 1.00405 1.01005 1.22190 0.93823 1.00945 1.01574 1.20946 0.85014 0.92974 0.98969 1.43606 0.99447 1.84774 1.02035 1.19031 1.05703 1.20494 0.93940 0.91998 1.25187 1.00812 0.94518 0.98111 1.69990 1.25634 1.14696 1.42464 0.86392 0.81646 0.77888 0.81487 1.21229 1.21695 1.20138 1.21063 1.00495 0.90983 0.86489 1.22627 0.94905 1.03271 0.82312 1.46021 1.55551 1.08752 1.23839 1.17727 0.79911 0.85298 0.82817 1.90799 1.55197 1.26427 1.68793 1.21471 0.98012 0.88439 0.96357 1.21940 0.93276 1.01899 0.91928 1.20379 1.03990 0.93723 0.97508 1.18049 0.74996 0.83166 0.77879 1.93256 1.59926 1.93577 1.68457 1.93211 1.48128 1.93852 1.80185 1.93245 1.94834 1.57805 1.69149 1.22220 0.97801 0.91597 1.01237 1.22960 0.93449 0.99436 0.89463 1.67672 1.08298 1.25400 1.12975 0.93472 0.93812 0.93194 0.92946 0.92329 0.93537 0.94715 0.93475 0.88265 0.95127 0.92557 0.91329 0.75575 0.82029 0.82855 0.80545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.15 -2.62 6.23 -26.73 -0.17 -2.79 16 3 C 0.15 3.01 5.72 -4.04 -0.02 2.99 16 4 N -0.58 -13.76 2.43 -173.24 -0.42 -14.18 16 5 C -0.26 -6.91 9.45 -15.06 -0.14 -7.06 16 6 H 0.06 1.65 7.92 -52.49 -0.42 1.24 16 7 C 0.01 0.38 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -24.42 11.47 55.49 0.64 -23.78 16 9 Si 0.90 21.22 29.60 -169.99 -5.03 16.19 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 C 0.14 3.00 5.45 -4.04 -0.02 2.98 16 14 C 0.09 1.87 6.00 -4.04 -0.02 1.84 16 15 N -0.69 -11.84 5.55 -61.15 -0.34 -12.18 16 16 C 0.56 9.47 7.81 -12.18 -0.10 9.37 16 17 O -0.54 -10.56 16.32 5.36 0.09 -10.47 16 18 C 0.10 1.30 6.75 -83.01 -0.56 0.74 16 19 C -0.07 -0.81 9.01 -39.05 -0.35 -1.17 16 20 C -0.15 -1.38 5.47 -104.35 -0.57 -1.95 16 21 C 0.51 4.66 3.39 36.01 0.12 4.78 16 22 F -0.17 -1.61 17.30 2.25 0.04 -1.57 16 23 F -0.17 -1.47 16.56 2.25 0.04 -1.43 16 24 F -0.17 -1.72 16.55 2.25 0.04 -1.68 16 25 C -0.11 -0.79 9.49 -39.32 -0.37 -1.17 16 26 C 0.11 0.86 11.18 -17.56 -0.20 0.67 16 27 N -0.43 -5.09 9.54 -9.80 -0.09 -5.18 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.97 6.64 -51.93 -0.34 0.62 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 35 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.10 2.45 5.52 -51.93 -0.29 2.16 16 37 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 38 H 0.06 1.13 6.64 -51.93 -0.34 0.78 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.41 6.34 7.80 -40.82 -0.32 6.03 16 41 H 0.16 1.90 7.28 -52.49 -0.38 1.52 16 42 H 0.15 0.66 7.69 -52.48 -0.40 0.26 16 43 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -29.96 377.81 -6.88 -36.84 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.40 Total: 4.01 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -2.12 Total: 7.75 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.22 Total: -55.33 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.11 Total: -4.69 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.96 -6.88 -36.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753148247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.355 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds