Wall clock time and date at job start Wed Apr 1 2020 03:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46738 * 2 1 4 4 N 1.46500 * 109.47210 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99779 * 275.31451 * 4 3 2 6 6 H 1.07990 * 120.00048 * 37.57353 * 5 4 3 7 7 C 1.38810 * 119.99485 * 217.57444 * 5 4 3 8 8 N 1.31623 * 120.00310 * 21.42927 * 7 5 4 9 9 Si 1.86792 * 120.00024 * 201.42383 * 7 5 4 10 10 H 1.48506 * 109.47232 * 90.00132 * 9 7 5 11 11 H 1.48499 * 109.47268 * 210.00059 * 9 7 5 12 12 H 1.48507 * 109.47103 * 330.00434 * 9 7 5 13 13 C 1.46500 * 119.99787 * 95.31014 * 4 3 2 14 14 C 1.53000 * 109.47071 * 270.00142 * 13 4 3 15 15 N 1.46500 * 109.47071 * 180.02562 * 14 13 4 16 16 C 1.34780 * 120.00018 * 179.97438 * 15 14 13 17 17 O 1.21509 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.48167 * 119.99934 * 180.02562 * 16 15 14 19 19 C 1.39305 * 119.72498 * 180.02562 * 18 16 15 20 20 C 1.38591 * 119.06140 * 180.27585 * 19 18 16 21 21 C 1.50703 * 120.75531 * 179.70112 * 20 19 18 22 22 F 1.39898 * 109.46979 * 89.99885 * 21 20 19 23 23 F 1.39892 * 109.46910 * 209.99851 * 21 20 19 24 24 F 1.39901 * 109.46857 * 329.99761 * 21 20 19 25 25 C 1.38624 * 118.48472 * 359.45557 * 20 19 18 26 26 C 1.38558 * 119.35523 * 0.52158 * 25 20 19 27 27 N 1.31529 * 120.90017 * 359.74855 * 26 25 20 28 28 H 1.09002 * 109.47487 * 60.00204 * 1 2 3 29 29 H 1.09010 * 109.46842 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47500 * 299.99428 * 1 2 3 31 31 H 1.08999 * 109.47023 * 240.00787 * 2 1 3 32 32 H 1.08995 * 109.47107 * 119.99760 * 2 1 3 33 33 H 1.09001 * 109.46658 * 60.00056 * 3 2 1 34 34 H 1.08997 * 109.47238 * 300.00517 * 3 2 1 35 35 H 0.96990 * 120.00421 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46753 * 150.00518 * 13 4 3 37 37 H 1.09003 * 109.46858 * 30.00411 * 13 4 3 38 38 H 1.08999 * 109.47523 * 59.99958 * 14 13 4 39 39 H 1.09005 * 109.47035 * 300.00099 * 14 13 4 40 40 H 0.97005 * 119.99749 * 0.02562 * 15 14 13 41 41 H 1.07998 * 120.46604 * 359.97438 * 19 18 16 42 42 H 1.08005 * 120.32282 * 180.27453 * 25 20 19 43 43 H 1.07995 * 119.54903 * 179.76300 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1891 1.3331 1.1818 6 1 3.8168 0.6877 1.9635 7 6 5.3611 2.0516 1.3742 8 7 5.6018 3.1243 0.6504 9 14 6.5966 1.4963 2.6603 10 1 7.5669 0.5575 2.0419 11 1 7.3217 2.6778 3.1929 12 1 5.8835 0.8121 3.7688 13 6 4.2379 1.5600 -1.2624 14 6 4.4932 0.1645 -1.8354 15 7 5.2267 0.2818 -3.0981 16 6 5.5645 -0.8265 -3.7866 17 8 5.2603 -1.9229 -3.3603 18 6 6.3069 -0.7079 -5.0634 19 6 6.6527 -1.8572 -5.7707 20 6 7.3521 -1.7306 -6.9605 21 6 7.7514 -2.9486 -7.7530 22 9 6.7363 -3.2673 -8.6614 23 9 8.9349 -2.6837 -8.4503 24 9 7.9537 -4.0253 -6.8830 25 6 7.6714 -0.4578 -7.4074 26 6 7.2949 0.6415 -6.6527 27 7 6.6364 0.4923 -5.5239 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9563 0.8900 34 1 1.6765 1.9564 -0.8899 35 1 6.4205 3.6266 0.7850 36 1 5.1902 2.0596 -1.0847 37 1 3.6490 2.1419 -1.9715 38 1 3.5409 -0.3352 -2.0130 39 1 5.0820 -0.4173 -1.1262 40 1 5.4699 1.1571 -3.4382 41 1 6.3839 -2.8333 -5.3946 42 1 8.2118 -0.3245 -8.3330 43 1 7.5454 1.6343 -6.9960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753148247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:15 Heat of formation + Delta-G solvation = -154.061806 kcal Electronic energy + Delta-G solvation = -29711.974965 eV Core-core repulsion = 24956.069208 eV Total energy + Delta-G solvation = -4755.905758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.33429 -48.84295 -48.79682 -41.90713 -40.20294 -38.25326 -35.93434 -34.73480 -34.55012 -32.94063 -32.48253 -29.88457 -27.96572 -27.33907 -26.18099 -24.67178 -24.11087 -22.64957 -22.06194 -21.70752 -20.07843 -19.67276 -19.65924 -18.69321 -18.09135 -17.54344 -17.16278 -17.03237 -16.62394 -16.58273 -15.95618 -15.80783 -15.69113 -15.61276 -15.45601 -15.22833 -15.07342 -15.00229 -14.93120 -14.86622 -14.64997 -14.31250 -14.20394 -13.53140 -13.33850 -13.30968 -13.08864 -12.93456 -12.63414 -12.52585 -12.23445 -12.03293 -11.87324 -11.69293 -11.60577 -11.54689 -11.28873 -10.88386 -10.57016 -10.52676 -10.08537 -8.59726 -7.85819 -5.49069 -0.72852 -0.37124 1.33611 1.43599 1.47818 1.48240 1.54390 1.93642 2.44277 2.49208 2.49980 2.78610 2.93333 3.20480 3.21869 3.55172 3.58003 3.66362 3.78804 4.11711 4.21911 4.27619 4.33510 4.37036 4.46020 4.53002 4.63242 4.68577 4.71609 4.85495 4.99760 5.13961 5.22499 5.23534 5.26343 5.31421 5.44425 5.63070 5.65238 5.73139 6.27824 6.45270 6.58546 7.02427 7.15152 7.82029 8.34476 9.09941 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.002462 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.222658 B =11369.551208 C =12301.738298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.270 4.270 6 H 0.053 0.947 7 C -0.028 4.028 8 N -0.909 5.909 9 Si 0.950 3.050 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.271 1.271 13 C 0.146 3.854 14 C 0.117 3.883 15 N -0.690 5.690 16 C 0.559 3.441 17 O -0.572 6.572 18 C 0.071 3.929 19 C -0.075 4.075 20 C -0.151 4.151 21 C 0.520 3.480 22 F -0.172 7.172 23 F -0.165 7.165 24 F -0.178 7.178 25 C -0.079 4.079 26 C 0.113 3.887 27 N -0.450 5.450 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.254 0.746 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.035 0.965 40 H 0.417 0.583 41 H 0.151 0.849 42 H 0.195 0.805 43 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 -5.674 -21.571 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.400 4.400 6 H 0.070 0.930 7 C -0.226 4.226 8 N -0.552 5.552 9 Si 0.779 3.221 10 H -0.217 1.217 11 H -0.215 1.215 12 H -0.196 1.196 13 C 0.018 3.982 14 C -0.009 4.009 15 N -0.340 5.340 16 C 0.344 3.656 17 O -0.452 6.452 18 C -0.066 4.066 19 C -0.096 4.096 20 C -0.160 4.160 21 C 0.465 3.535 22 F -0.154 7.154 23 F -0.146 7.146 24 F -0.160 7.160 25 C -0.099 4.099 26 C -0.048 4.048 27 N -0.161 5.161 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.254 0.746 41 H 0.169 0.831 42 H 0.212 0.788 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.351 -5.594 -20.687 21.690 hybrid contribution 1.123 -0.996 0.297 1.530 sum 4.474 -6.590 -20.390 21.891 Atomic orbital electron populations 1.21656 0.94268 1.01775 1.01995 1.22019 0.96418 0.98751 1.00307 1.21060 0.83265 0.94569 0.99121 1.43835 1.00882 1.85049 1.01892 1.19158 1.06263 1.19930 0.94674 0.92974 1.25754 1.02104 0.94714 1.00013 1.70079 1.25879 1.15465 1.43802 0.85548 0.79617 0.77267 0.79712 1.21723 1.21498 1.19595 1.20903 0.99291 0.91702 0.86259 1.22086 0.94505 1.01411 0.82943 1.45843 1.55662 1.09563 1.22970 1.18241 0.79234 0.84334 0.83771 1.90762 1.56677 1.27611 1.70146 1.20800 1.00284 0.89872 0.95613 1.21824 0.94005 1.00913 0.92908 1.20452 1.03889 0.94940 0.96768 1.17933 0.75114 0.82737 0.77683 1.93256 1.60069 1.93576 1.68449 1.93228 1.47662 1.93752 1.79964 1.93232 1.94890 1.58310 1.69537 1.22735 0.95352 0.90094 1.01749 1.23721 0.91612 1.01548 0.87889 1.67612 1.09274 1.24496 1.14748 0.92104 0.92278 0.92585 0.93576 0.94235 0.94565 0.93226 0.93685 0.90835 0.93704 0.92689 0.94604 0.74580 0.83129 0.78779 0.76387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.12 16 2 C -0.14 -4.86 6.23 30.60 0.19 -4.67 16 3 C 0.15 5.95 5.72 86.38 0.49 6.45 16 4 N -0.60 -28.93 2.43 -702.00 -1.71 -30.64 16 5 C -0.27 -14.59 9.45 84.03 0.79 -13.80 16 6 H 0.05 2.87 7.92 -2.92 -0.02 2.84 16 7 C -0.03 -1.50 4.95 84.86 0.42 -1.08 16 8 N -0.91 -50.98 11.47 21.65 0.25 -50.73 16 9 Si 0.95 44.40 29.60 68.60 2.03 46.43 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 C 0.15 6.52 5.45 86.38 0.47 6.99 16 14 C 0.12 4.82 6.00 86.38 0.52 5.34 16 15 N -0.69 -24.32 5.55 -465.66 -2.58 -26.90 16 16 C 0.56 19.57 7.81 86.88 0.68 20.25 16 17 O -0.57 -23.71 16.32 -3.74 -0.06 -23.77 16 18 C 0.07 1.91 6.75 41.91 0.28 2.19 16 19 C -0.08 -1.74 9.01 22.61 0.20 -1.54 16 20 C -0.15 -2.53 5.47 -19.69 -0.11 -2.63 16 21 C 0.52 8.41 3.39 71.24 0.24 8.65 16 22 F -0.17 -2.93 17.30 44.97 0.78 -2.15 16 23 F -0.16 -2.31 16.56 44.97 0.74 -1.57 16 24 F -0.18 -3.50 16.55 44.97 0.74 -2.75 16 25 C -0.08 -0.84 9.49 22.44 0.21 -0.63 16 26 C 0.11 1.40 11.18 84.81 0.95 2.35 16 27 N -0.45 -9.86 9.54 -184.92 -1.76 -11.63 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.70 6.64 -2.39 -0.02 1.69 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 34 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 35 H 0.25 13.76 8.31 -92.72 -0.77 12.98 16 36 H 0.07 3.74 5.52 -2.39 -0.01 3.73 16 37 H 0.04 1.84 7.86 -2.39 -0.02 1.83 16 38 H 0.05 2.28 6.64 -2.39 -0.02 2.26 16 39 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.42 13.15 7.80 -92.70 -0.72 12.43 16 41 H 0.15 3.72 7.28 -2.91 -0.02 3.70 16 42 H 0.20 0.51 7.69 -2.91 -0.02 0.49 16 43 H 0.22 0.83 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -67.25 377.81 4.83 -62.43 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.34 Total: 16.52 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 6.06 Total: 24.76 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -5.81 Total: -119.89 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.06 Total: -23.77 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 2.27 Total: -6.47 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.25 4.83 -62.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753148247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.636 kcal (2) G-P(sol) polarization free energy of solvation -67.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds