Wall clock time and date at job start Wed Apr 1 2020 04:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47052 * 2 1 4 4 N 1.46496 * 109.47406 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00298 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99635 * 359.97438 * 5 4 3 7 7 C 1.38808 * 119.99992 * 179.97438 * 5 4 3 8 8 N 1.31617 * 120.00250 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99868 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47444 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47097 * 120.00548 * 9 7 5 12 12 H 1.48499 * 109.47601 * 240.00473 * 9 7 5 13 13 N 1.46495 * 109.46830 * 119.99281 * 2 1 3 14 14 C 1.34777 * 120.00799 * 304.32842 * 13 2 1 15 15 O 1.21581 * 119.99622 * 354.96112 * 14 13 2 16 16 C 1.47580 * 120.00223 * 174.95974 * 14 13 2 17 17 C 1.39563 * 120.22144 * 359.97438 * 16 14 13 18 18 C 1.38177 * 120.29057 * 180.02562 * 17 16 14 19 19 C 1.38026 * 120.59626 * 359.78209 * 18 17 16 20 20 C 1.39480 * 120.06581 * 0.44308 * 19 18 17 21 21 N 1.36213 * 133.65447 * 179.87291 * 20 19 18 22 22 C 1.30598 * 108.67511 * 179.71191 * 21 20 19 23 23 O 1.35191 * 124.94385 * 180.02562 * 22 21 20 24 24 O 1.34414 * 110.11553 * 359.97438 * 22 21 20 25 25 C 1.35007 * 108.21599 * 0.02562 * 24 22 21 26 26 C 1.52998 * 109.47264 * 239.99890 * 2 1 3 27 27 C 1.52990 * 117.50094 * 12.86758 * 26 2 1 28 28 C 1.52997 * 117.49960 * 304.20460 * 26 2 1 29 29 H 1.08998 * 109.47407 * 300.00195 * 1 2 3 30 30 H 1.09003 * 109.47173 * 60.00155 * 1 2 3 31 31 H 1.08996 * 109.47022 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47005 * 299.99948 * 3 2 1 33 33 H 1.09006 * 109.46987 * 59.99383 * 3 2 1 34 34 H 0.97000 * 119.99837 * 359.97438 * 4 3 2 35 35 H 0.97003 * 120.00103 * 179.97438 * 8 7 5 36 36 H 0.97003 * 119.99477 * 124.32859 * 13 2 1 37 37 H 1.07999 * 119.84983 * 0.05013 * 17 16 14 38 38 H 1.07997 * 119.69730 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.95998 * 180.02562 * 19 18 17 40 40 H 0.96698 * 114.00128 * 359.97438 * 23 22 21 41 41 H 1.09006 * 115.54719 * 158.53635 * 26 2 1 42 42 H 1.09007 * 117.49997 * 359.97438 * 27 26 2 43 43 H 1.09003 * 117.50081 * 145.01991 * 27 26 2 44 44 H 1.09000 * 117.50108 * 214.98020 * 28 26 2 45 45 H 1.09005 * 117.49505 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1896 2.6285 0.0002 6 1 3.6496 3.5638 -0.0010 7 6 5.5777 2.6286 0.0013 8 7 6.2359 1.4888 0.0023 9 14 6.5117 4.2463 0.0000 10 1 5.5467 5.3750 -0.0016 11 1 7.3645 4.3265 1.2131 12 1 7.3663 4.3236 -1.2119 13 7 2.0183 -0.6904 1.1962 14 6 1.6224 -0.2830 2.4184 15 8 0.9342 0.7126 2.5339 16 6 2.0241 -1.0454 3.6165 17 6 2.8136 -2.1893 3.4892 18 6 3.1901 -2.9045 4.6099 19 6 2.7962 -2.4971 5.8684 20 6 2.0031 -1.3595 6.0183 21 7 1.4660 -0.7230 7.0962 22 6 0.7994 0.3189 6.6772 23 8 0.1346 1.1848 7.4747 24 8 0.8715 0.4059 5.3379 25 6 1.6159 -0.6264 4.8874 26 6 2.0400 -0.7213 -1.2492 27 6 1.0283 -1.0131 -2.3590 28 6 1.5563 -2.1534 -1.4850 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.9900 0.6026 0.0013 35 1 7.2059 1.4888 0.0027 36 1 2.6266 -1.4409 1.1086 37 1 3.1318 -2.5166 2.5104 38 1 3.8008 -3.7885 4.5003 39 1 3.0967 -3.0636 6.7374 40 1 0.1873 0.9720 8.4165 41 1 3.0597 -0.4786 -1.5487 42 1 -0.0010 -0.6916 -2.1991 43 1 1.3822 -0.9629 -3.3888 44 1 2.2574 -2.8530 -1.9401 45 1 0.8743 -2.5817 -0.7504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753529824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:11 Heat of formation + Delta-G solvation = 23.629638 kcal Electronic energy + Delta-G solvation = -30835.836205 eV Core-core repulsion = 26629.492467 eV Total energy + Delta-G solvation = -4206.343738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -43.43027 -40.22645 -38.73082 -37.98220 -37.37820 -34.70985 -34.58481 -33.49022 -31.70414 -30.63619 -29.68480 -29.16598 -25.89984 -24.63645 -23.68690 -23.16791 -22.76660 -22.29801 -22.05148 -20.23881 -19.17634 -18.99170 -18.43167 -17.65883 -17.32416 -17.13290 -16.60752 -15.83113 -15.25783 -15.12288 -14.80344 -14.61103 -14.40163 -14.13051 -13.79889 -13.76576 -13.57573 -13.20316 -12.73787 -12.59071 -12.39879 -12.29710 -12.08573 -11.97491 -11.91717 -11.42897 -11.17515 -11.03957 -10.90357 -10.81703 -10.79769 -10.72127 -10.19364 -10.03831 -9.82703 -9.64706 -9.40058 -8.96791 -8.76912 -8.61536 -8.44092 -6.81361 -5.71581 -2.97210 0.34576 0.98812 1.45892 2.08930 3.04222 3.22592 3.33246 3.46871 3.53193 3.55293 3.73708 4.04478 4.24502 4.51300 4.64789 4.72490 4.74042 4.84436 5.04465 5.08865 5.11062 5.18992 5.35471 5.38212 5.46275 5.63317 5.64968 5.68643 5.76969 5.84046 5.97437 5.99911 6.04954 6.09141 6.22188 6.25501 6.26647 6.29272 6.46176 6.56086 6.68677 6.69968 6.92553 7.12472 7.42565 7.78000 7.84912 8.48351 8.53181 9.59961 10.17700 10.53769 11.51856 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.004016 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3330.988781 B = 6971.106875 C = 8480.670440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.203 3.797 3 C 0.144 3.856 4 N -0.726 5.726 5 C -0.228 4.228 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 N -0.701 5.701 14 C 0.560 3.440 15 O -0.519 6.519 16 C -0.087 4.087 17 C -0.065 4.065 18 C -0.116 4.116 19 C -0.050 4.050 20 C 0.040 3.960 21 N -0.527 5.527 22 C 0.448 3.552 23 O -0.412 6.412 24 O -0.175 6.175 25 C 0.058 3.942 26 C -0.150 4.150 27 C -0.172 4.172 28 C -0.183 4.183 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.025 0.975 33 H 0.045 0.955 34 H 0.381 0.619 35 H 0.252 0.748 36 H 0.397 0.603 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.439 0.561 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.303 -13.563 8.768 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.118 3.882 3 C 0.015 3.985 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.586 5.586 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.352 5.352 14 C 0.346 3.654 15 O -0.395 6.395 16 C -0.091 4.091 17 C -0.084 4.084 18 C -0.135 4.135 19 C -0.070 4.070 20 C -0.071 4.071 21 N -0.279 5.279 22 C 0.199 3.801 23 O -0.213 6.213 24 O -0.067 6.067 25 C 0.006 3.994 26 C -0.169 4.169 27 C -0.209 4.209 28 C -0.220 4.220 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.215 0.785 35 H 0.062 0.938 36 H 0.233 0.767 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.298 0.702 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.985 -12.388 8.947 19.420 hybrid contribution 1.150 0.526 -0.065 1.266 sum -10.835 -11.862 8.882 18.357 Atomic orbital electron populations 1.22289 0.94604 1.01694 1.03724 1.20054 0.93153 0.93181 0.81851 1.21075 0.86472 0.91639 0.99276 1.42230 0.99178 1.06175 1.89409 1.19290 0.89032 0.86251 1.41381 0.91317 1.24657 0.96271 0.96682 1.03518 1.69649 1.06526 1.23715 1.58749 0.86147 0.79920 0.83325 0.77059 1.20632 1.22041 1.21978 1.45785 1.49027 1.35464 1.04915 1.17815 0.80583 0.84195 0.82770 1.90772 1.38305 1.24461 1.86006 1.18983 1.02679 0.97887 0.89514 1.21266 0.94563 0.92318 1.00219 1.20989 1.00649 1.00808 0.91061 1.20390 0.95025 0.93150 0.98417 1.19441 1.01971 0.98452 0.87272 1.71200 1.18755 1.08561 1.29343 1.22340 0.90200 0.87417 0.80146 1.84704 1.67502 1.45810 1.23292 1.84551 1.59244 1.43833 1.19097 1.19749 0.96438 0.87791 0.95396 1.22563 1.00825 0.97007 0.96481 1.23057 0.99294 1.02691 0.95857 1.22963 1.04019 0.91506 1.03539 0.90176 0.91423 0.92889 0.95755 0.93737 0.78464 0.93795 0.76738 0.83603 0.83717 0.84180 0.70188 0.85886 0.88258 0.88852 0.88877 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 6.98 37.16 0.26 -2.18 16 2 C 0.20 3.37 0.54 -131.82 -0.07 3.29 16 3 C 0.14 3.11 5.03 -4.04 -0.02 3.09 16 4 N -0.73 -18.51 5.04 -59.91 -0.30 -18.81 16 5 C -0.23 -6.58 9.99 -15.06 -0.15 -6.73 16 6 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 8 N -0.94 -28.19 13.06 55.49 0.72 -27.46 16 9 Si 0.90 23.11 29.55 -169.99 -5.02 18.08 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 N -0.70 -11.09 4.67 -48.63 -0.23 -11.31 16 14 C 0.56 10.03 7.17 -12.45 -0.09 9.94 16 15 O -0.52 -11.08 12.36 -4.61 -0.06 -11.13 16 16 C -0.09 -1.34 5.88 -104.97 -0.62 -1.95 16 17 C -0.06 -0.74 9.53 -39.11 -0.37 -1.11 16 18 C -0.12 -1.09 10.00 -39.68 -0.40 -1.49 16 19 C -0.05 -0.54 10.09 -39.20 -0.40 -0.94 16 20 C 0.04 0.56 7.23 -84.71 -0.61 -0.05 16 21 N -0.53 -7.14 11.38 -12.81 -0.15 -7.28 16 22 C 0.45 6.15 9.54 52.24 0.50 6.64 16 23 O -0.41 -3.99 13.62 -40.55 -0.55 -4.54 16 24 O -0.18 -3.04 10.16 -24.66 -0.25 -3.29 16 25 C 0.06 0.94 6.98 -38.21 -0.27 0.67 16 26 C -0.15 -2.22 4.84 -90.63 -0.44 -2.66 16 27 C -0.17 -2.10 9.64 -26.70 -0.26 -2.36 16 28 C -0.18 -2.08 9.83 -26.70 -0.26 -2.35 16 29 H 0.08 1.37 6.03 -51.93 -0.31 1.06 16 30 H 0.07 0.92 6.78 -51.93 -0.35 0.57 16 31 H 0.05 0.68 6.98 -51.93 -0.36 0.32 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.04 1.09 6.32 -51.93 -0.33 0.76 16 34 H 0.38 9.85 6.62 -40.82 -0.27 9.58 16 35 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.40 5.32 6.52 -40.82 -0.27 5.06 16 37 H 0.15 1.30 6.40 -52.49 -0.34 0.97 16 38 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.44 1.51 9.06 45.56 0.41 1.92 16 41 H 0.12 2.19 7.09 -51.93 -0.37 1.82 16 42 H 0.10 1.14 5.88 -51.93 -0.31 0.83 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 0.97 7.34 -51.93 -0.38 0.59 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -37.14 371.64 -8.05 -45.19 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -4.53 Total: 13.69 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.29 Total: 1.26 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: 0.05 Total: -64.87 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.86 Total: -18.96 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.14 -8.05 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753529824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.824 kcal (2) G-P(sol) polarization free energy of solvation -37.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds