Wall clock time and date at job start Wed Apr 1 2020 04:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47052 * 2 1 4 4 N 1.46496 * 109.47406 * 179.97438 * 3 2 1 5 5 C 1.36940 * 120.00298 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99635 * 359.97438 * 5 4 3 7 7 C 1.38808 * 119.99992 * 179.97438 * 5 4 3 8 8 N 1.31617 * 120.00250 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99868 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47444 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47097 * 120.00548 * 9 7 5 12 12 H 1.48499 * 109.47601 * 240.00473 * 9 7 5 13 13 N 1.46495 * 109.46830 * 119.99281 * 2 1 3 14 14 C 1.34777 * 120.00799 * 304.32842 * 13 2 1 15 15 O 1.21581 * 119.99622 * 354.96112 * 14 13 2 16 16 C 1.47580 * 120.00223 * 174.95974 * 14 13 2 17 17 C 1.39563 * 120.22144 * 359.97438 * 16 14 13 18 18 C 1.38177 * 120.29057 * 180.02562 * 17 16 14 19 19 C 1.38026 * 120.59626 * 359.78209 * 18 17 16 20 20 C 1.39480 * 120.06581 * 0.44308 * 19 18 17 21 21 N 1.36213 * 133.65447 * 179.87291 * 20 19 18 22 22 C 1.30598 * 108.67511 * 179.71191 * 21 20 19 23 23 O 1.35191 * 124.94385 * 180.02562 * 22 21 20 24 24 O 1.34414 * 110.11553 * 359.97438 * 22 21 20 25 25 C 1.35007 * 108.21599 * 0.02562 * 24 22 21 26 26 C 1.52998 * 109.47264 * 239.99890 * 2 1 3 27 27 C 1.52990 * 117.50094 * 12.86758 * 26 2 1 28 28 C 1.52997 * 117.49960 * 304.20460 * 26 2 1 29 29 H 1.08998 * 109.47407 * 300.00195 * 1 2 3 30 30 H 1.09003 * 109.47173 * 60.00155 * 1 2 3 31 31 H 1.08996 * 109.47022 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47005 * 299.99948 * 3 2 1 33 33 H 1.09006 * 109.46987 * 59.99383 * 3 2 1 34 34 H 0.97000 * 119.99837 * 359.97438 * 4 3 2 35 35 H 0.97003 * 120.00103 * 179.97438 * 8 7 5 36 36 H 0.97003 * 119.99477 * 124.32859 * 13 2 1 37 37 H 1.07999 * 119.84983 * 0.05013 * 17 16 14 38 38 H 1.07997 * 119.69730 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.95998 * 180.02562 * 19 18 17 40 40 H 0.96698 * 114.00128 * 359.97438 * 23 22 21 41 41 H 1.09006 * 115.54719 * 158.53635 * 26 2 1 42 42 H 1.09007 * 117.49997 * 359.97438 * 27 26 2 43 43 H 1.09003 * 117.50081 * 145.01991 * 27 26 2 44 44 H 1.09000 * 117.50108 * 214.98020 * 28 26 2 45 45 H 1.09005 * 117.49505 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1896 2.6285 0.0002 6 1 3.6496 3.5638 -0.0010 7 6 5.5777 2.6286 0.0013 8 7 6.2359 1.4888 0.0023 9 14 6.5117 4.2463 0.0000 10 1 5.5467 5.3750 -0.0016 11 1 7.3645 4.3265 1.2131 12 1 7.3663 4.3236 -1.2119 13 7 2.0183 -0.6904 1.1962 14 6 1.6224 -0.2830 2.4184 15 8 0.9342 0.7126 2.5339 16 6 2.0241 -1.0454 3.6165 17 6 2.8136 -2.1893 3.4892 18 6 3.1901 -2.9045 4.6099 19 6 2.7962 -2.4971 5.8684 20 6 2.0031 -1.3595 6.0183 21 7 1.4660 -0.7230 7.0962 22 6 0.7994 0.3189 6.6772 23 8 0.1346 1.1848 7.4747 24 8 0.8715 0.4059 5.3379 25 6 1.6159 -0.6264 4.8874 26 6 2.0400 -0.7213 -1.2492 27 6 1.0283 -1.0131 -2.3590 28 6 1.5563 -2.1534 -1.4850 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.9900 0.6026 0.0013 35 1 7.2059 1.4888 0.0027 36 1 2.6266 -1.4409 1.1086 37 1 3.1318 -2.5166 2.5104 38 1 3.8008 -3.7885 4.5003 39 1 3.0967 -3.0636 6.7374 40 1 0.1873 0.9720 8.4165 41 1 3.0597 -0.4786 -1.5487 42 1 -0.0010 -0.6916 -2.1991 43 1 1.3822 -0.9629 -3.3888 44 1 2.2574 -2.8530 -1.9401 45 1 0.8743 -2.5817 -0.7504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753529824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:10 Heat of formation + Delta-G solvation = -7.509842 kcal Electronic energy + Delta-G solvation = -30837.186514 eV Core-core repulsion = 26629.492467 eV Total energy + Delta-G solvation = -4207.694047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.46761 -41.52790 -39.68573 -39.00682 -38.48572 -36.38809 -35.66628 -35.05320 -33.26458 -32.12080 -30.96496 -30.22879 -27.62512 -25.87699 -24.97608 -24.28186 -24.10520 -23.72097 -23.08857 -21.38541 -20.30684 -20.08415 -19.49670 -19.28140 -18.73970 -18.39144 -17.65722 -17.02213 -16.82402 -16.29849 -16.08764 -15.95751 -15.66269 -15.43978 -15.15989 -14.99034 -14.72831 -14.62637 -14.25218 -13.84166 -13.69721 -13.57370 -13.25750 -13.21824 -13.10591 -12.89014 -12.83689 -12.49895 -12.22449 -12.14504 -12.06438 -12.00402 -11.92712 -11.77581 -11.24672 -11.08321 -10.93417 -10.64283 -10.09007 -9.86072 -9.41396 -8.95879 -7.97162 -5.22757 -0.62911 -0.00603 0.56338 1.06981 1.42022 1.43056 1.52869 1.88610 2.03506 2.37984 2.53080 2.65602 3.01781 3.27677 3.35717 3.56820 3.62853 3.78200 3.88079 3.91738 3.94106 4.16327 4.18354 4.23856 4.26534 4.45542 4.53548 4.62605 4.74954 4.79991 4.83911 4.86753 4.90125 4.97806 5.05006 5.11341 5.14647 5.20669 5.28667 5.36165 5.44238 5.46246 5.47616 5.63208 5.90471 6.26241 6.52555 6.59292 7.24490 7.33658 8.07191 8.37502 9.25971 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.004016 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3330.988781 B = 6971.106875 C = 8480.670440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.211 3.789 3 C 0.145 3.855 4 N -0.727 5.727 5 C -0.246 4.246 6 H 0.059 0.941 7 C -0.065 4.065 8 N -0.960 5.960 9 Si 0.965 3.035 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.285 1.285 13 N -0.691 5.691 14 C 0.553 3.447 15 O -0.567 6.567 16 C -0.122 4.122 17 C -0.053 4.053 18 C -0.100 4.100 19 C -0.040 4.040 20 C 0.023 3.977 21 N -0.523 5.523 22 C 0.441 3.559 23 O -0.408 6.408 24 O -0.214 6.214 25 C 0.022 3.978 26 C -0.175 4.175 27 C -0.165 4.165 28 C -0.151 4.151 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.020 0.980 33 H 0.011 0.989 34 H 0.379 0.621 35 H 0.252 0.748 36 H 0.409 0.591 37 H 0.171 0.829 38 H 0.194 0.806 39 H 0.174 0.826 40 H 0.461 0.539 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 -16.463 8.806 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.126 3.874 3 C 0.018 3.982 4 N -0.370 5.370 5 C -0.378 4.378 6 H 0.077 0.923 7 C -0.258 4.258 8 N -0.610 5.610 9 Si 0.795 3.205 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.212 1.212 13 N -0.342 5.342 14 C 0.340 3.660 15 O -0.447 6.447 16 C -0.126 4.126 17 C -0.071 4.071 18 C -0.118 4.118 19 C -0.059 4.059 20 C -0.088 4.088 21 N -0.275 5.275 22 C 0.192 3.808 23 O -0.213 6.213 24 O -0.108 6.108 25 C -0.029 4.029 26 C -0.194 4.194 27 C -0.202 4.202 28 C -0.188 4.188 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.037 0.963 33 H 0.029 0.971 34 H 0.212 0.788 35 H 0.061 0.939 36 H 0.247 0.753 37 H 0.189 0.811 38 H 0.211 0.789 39 H 0.191 0.809 40 H 0.325 0.675 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.127 0.873 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.366 -15.319 9.001 21.092 hybrid contribution 0.957 1.412 -0.029 1.706 sum -10.409 -13.907 8.972 19.551 Atomic orbital electron populations 1.22201 0.93024 1.03156 1.02933 1.19857 0.94138 0.90240 0.83186 1.21086 0.84467 0.95479 0.97199 1.42256 1.00593 1.05104 1.89092 1.19551 0.89756 0.87123 1.41351 0.92262 1.25369 0.96912 0.99870 1.03676 1.69765 1.06581 1.25286 1.59411 0.85194 0.78498 0.79854 0.76952 1.20129 1.22041 1.21212 1.45723 1.48842 1.35383 1.04274 1.18350 0.79834 0.83838 0.83929 1.90741 1.40530 1.26652 1.86761 1.19063 1.05492 0.99841 0.88229 1.21698 0.92480 0.90541 1.02404 1.21543 0.99469 1.01307 0.89510 1.20953 0.92997 0.91641 1.00334 1.19938 1.02909 0.99504 0.86485 1.71194 1.18833 1.08479 1.29023 1.22649 0.90606 0.88009 0.79560 1.84705 1.66718 1.45089 1.24813 1.84472 1.60226 1.45113 1.21007 1.20162 0.97678 0.88470 0.96590 1.22220 0.99925 1.00493 0.96800 1.23190 0.98951 1.02526 0.95542 1.23069 1.03305 0.89769 1.02658 0.92935 0.90249 0.90157 0.96259 0.97122 0.78750 0.93890 0.75306 0.81125 0.78863 0.80863 0.67451 0.89187 0.87205 0.88173 0.87260 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 6.98 71.98 0.50 -4.08 16 2 C 0.21 7.13 0.54 3.60 0.00 7.13 16 3 C 0.15 6.65 5.03 86.38 0.43 7.09 16 4 N -0.73 -38.58 5.04 -343.45 -1.73 -40.31 16 5 C -0.25 -14.64 9.99 84.03 0.84 -13.80 16 6 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 7 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 8 N -0.96 -58.29 13.06 21.65 0.28 -58.01 16 9 Si 0.97 48.08 29.55 68.60 2.03 50.11 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 N -0.69 -22.12 4.67 -426.02 -1.99 -24.11 16 14 C 0.55 20.72 7.17 86.71 0.62 21.34 16 15 O -0.57 -26.15 12.36 5.50 0.07 -26.08 16 16 C -0.12 -3.85 5.88 -20.09 -0.12 -3.97 16 17 C -0.05 -1.09 9.53 22.58 0.22 -0.87 16 18 C -0.10 -1.48 10.00 22.20 0.22 -1.26 16 19 C -0.04 -0.74 10.09 22.52 0.23 -0.51 16 20 C 0.02 0.62 7.23 39.25 0.28 0.90 16 21 N -0.52 -14.15 11.38 -422.77 -4.81 -18.96 16 22 C 0.44 12.63 9.54 130.43 1.24 13.88 16 23 O -0.41 -8.16 13.62 -62.45 -0.85 -9.01 16 24 O -0.21 -8.02 10.16 16.24 0.17 -7.85 16 25 C 0.02 0.73 6.98 23.16 0.16 0.89 16 26 C -0.18 -5.07 4.84 -10.80 -0.05 -5.12 16 27 C -0.16 -3.65 9.64 30.62 0.30 -3.36 16 28 C -0.15 -2.96 9.83 30.62 0.30 -2.66 16 29 H 0.05 1.88 6.03 -2.39 -0.01 1.87 16 30 H 0.08 2.12 6.78 -2.39 -0.02 2.10 16 31 H 0.08 1.92 6.98 -2.39 -0.02 1.90 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.01 0.57 6.32 -2.38 -0.02 0.56 16 34 H 0.38 20.22 6.62 -92.71 -0.61 19.60 16 35 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.41 10.63 6.52 -92.71 -0.60 10.03 16 37 H 0.17 2.53 6.40 -2.91 -0.02 2.51 16 38 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.46 3.08 9.06 -74.06 -0.67 2.41 16 41 H 0.09 3.25 7.09 -2.38 -0.02 3.24 16 42 H 0.11 2.22 5.88 -2.38 -0.01 2.20 16 43 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.11 1.82 7.34 -2.38 -0.02 1.80 16 Total: -1.00 -86.18 371.64 -1.99 -88.17 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.80 Total: 33.85 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 5.65 Total: 12.21 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -8.25 Total: -141.40 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.62 Total: -42.94 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -86.18 -1.99 -88.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753529824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.664 kcal (2) G-P(sol) polarization free energy of solvation -86.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds