Wall clock time and date at job start Wed Apr 1 2020 04:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 N 1.46504 * 109.47191 * 300.00032 * 3 2 1 5 5 C 1.36933 * 119.99874 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.38816 * 119.99649 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00300 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99810 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47382 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47363 * 119.99875 * 9 7 5 12 12 H 1.48501 * 109.46997 * 239.99712 * 9 7 5 13 13 N 1.46494 * 109.46867 * 239.99987 * 2 1 3 14 14 C 1.34779 * 119.99544 * 173.96740 * 13 2 1 15 15 O 1.21587 * 120.00254 * 5.27415 * 14 13 2 16 16 C 1.47595 * 119.99814 * 185.27774 * 14 13 2 17 17 C 1.39558 * 120.21420 * 359.72177 * 16 14 13 18 18 C 1.38187 * 120.28432 * 179.82569 * 17 16 14 19 19 C 1.38026 * 120.59779 * 0.40901 * 18 17 16 20 20 C 1.39487 * 120.06503 * 359.83037 * 19 18 17 21 21 N 1.36208 * 133.65498 * 179.97438 * 20 19 18 22 22 C 1.30604 * 108.67608 * 180.02562 * 21 20 19 23 23 O 1.35191 * 124.94208 * 180.02562 * 22 21 20 24 24 O 1.34415 * 110.11120 * 359.97438 * 22 21 20 25 25 C 1.35014 * 108.21671 * 0.02562 * 24 22 21 26 26 C 1.53002 * 109.46914 * 119.99728 * 2 1 3 27 27 C 1.52997 * 117.50018 * 54.46013 * 26 2 1 28 28 C 1.52997 * 60.00131 * 107.48681 * 27 26 2 29 29 H 1.08998 * 109.46914 * 299.99951 * 1 2 3 30 30 H 1.08997 * 109.47188 * 60.00045 * 1 2 3 31 31 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47628 * 59.99968 * 3 2 1 33 33 H 1.09003 * 109.46839 * 179.97438 * 3 2 1 34 34 H 0.96998 * 119.99416 * 359.97438 * 4 3 2 35 35 H 0.96996 * 120.00241 * 180.02562 * 8 7 5 36 36 H 0.96995 * 120.00303 * 353.96035 * 13 2 1 37 37 H 1.08000 * 119.85880 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.69901 * 180.23333 * 18 17 16 39 39 H 1.07999 * 119.96900 * 179.79904 * 19 18 17 40 40 H 0.96699 * 114.00462 * 359.97318 * 23 22 21 41 41 H 1.09002 * 115.56297 * 268.76572 * 26 2 1 42 42 H 1.09004 * 117.49816 * 359.97438 * 27 26 2 43 43 H 1.08994 * 117.50040 * 214.97546 * 27 26 2 44 44 H 1.09008 * 117.50001 * 107.49037 * 28 27 26 45 45 H 1.09008 * 117.50257 * 252.51063 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8828 3.4440 -1.4131 6 1 2.5038 3.9689 -0.7022 7 6 1.4196 4.0985 -2.5463 8 7 0.6626 3.4590 -3.4124 9 14 1.8709 5.8869 -2.8419 10 1 2.7246 6.3727 -1.7281 11 1 2.6128 6.0051 -4.1228 12 1 0.6333 6.7049 -2.9094 13 7 2.0183 -0.6906 -1.1961 14 6 3.3373 -0.7085 -1.4726 15 8 4.1307 -0.2357 -0.6819 16 6 3.8186 -1.3022 -2.7353 17 6 2.9124 -1.8514 -3.6434 18 6 3.3611 -2.4043 -4.8277 19 6 4.7087 -2.4293 -5.1252 20 6 5.6322 -1.8904 -4.2295 21 7 6.9888 -1.7684 -4.2373 22 6 7.3618 -1.1765 -3.1345 23 8 8.6411 -0.8902 -2.8039 24 8 6.2887 -0.8924 -2.3766 25 6 5.1867 -1.3235 -3.0268 26 6 2.0400 -0.7212 1.2493 27 6 1.5317 -2.1420 1.5018 28 6 2.9739 -1.9156 1.0437 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 0.9943 1.6615 -1.8348 35 1 0.3392 3.9162 -4.2043 36 1 1.3924 -1.1350 -1.7891 37 1 1.8556 -1.8420 -3.4208 38 1 2.6512 -2.8233 -5.5254 39 1 5.0484 -2.8669 -6.0523 40 1 9.2895 -1.1649 -3.4665 41 1 2.2167 -0.0880 2.1187 42 1 0.8337 -2.5629 0.7780 43 1 1.3740 -2.4436 2.5372 44 1 3.7650 -2.0682 1.7780 45 1 3.2250 -2.1876 0.0184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753529825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:16 Heat of formation + Delta-G solvation = 31.127268 kcal Electronic energy + Delta-G solvation = -31296.509602 eV Core-core repulsion = 27090.490986 eV Total energy + Delta-G solvation = -4206.018616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.37950 -40.43627 -38.65846 -37.81357 -36.94005 -34.95765 -34.57258 -33.37579 -31.74077 -30.61640 -29.62838 -29.14299 -26.02669 -24.52643 -23.72079 -23.15998 -22.96284 -22.05957 -21.33383 -20.56154 -19.19937 -19.10333 -18.39187 -17.61942 -17.29896 -17.20207 -16.45376 -15.91708 -15.42474 -15.13636 -14.79691 -14.43243 -14.19422 -13.93366 -13.82634 -13.63761 -13.47372 -13.27231 -12.84537 -12.54640 -12.34000 -12.13419 -12.06490 -11.96113 -11.85485 -11.34779 -11.09778 -11.02530 -10.87151 -10.84929 -10.76367 -10.71640 -10.18027 -10.02346 -9.83868 -9.64472 -9.30354 -8.91357 -8.74814 -8.59217 -8.39930 -6.80460 -5.71342 -2.96752 0.39682 1.04116 1.50681 2.13962 3.08180 3.32414 3.38120 3.46913 3.53169 3.55266 3.80221 4.05364 4.27035 4.55283 4.63943 4.77270 4.82626 4.89711 5.08057 5.12112 5.17185 5.21072 5.41843 5.44611 5.55780 5.65527 5.70020 5.74533 5.79719 5.83321 6.01247 6.04404 6.07437 6.12914 6.19536 6.29797 6.30986 6.32720 6.39687 6.60422 6.64933 6.73229 6.93988 7.16481 7.47366 7.78344 7.84558 8.48671 8.58018 9.60284 10.17975 10.53993 11.52135 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007934 B = 0.004628 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3528.141471 B = 6048.971415 C = 7725.590175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.201 3.799 3 C 0.140 3.860 4 N -0.726 5.726 5 C -0.227 4.227 6 H 0.068 0.932 7 C -0.016 4.016 8 N -0.936 5.936 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 N -0.708 5.708 14 C 0.563 3.437 15 O -0.507 6.507 16 C -0.087 4.087 17 C -0.065 4.065 18 C -0.116 4.116 19 C -0.051 4.051 20 C 0.040 3.960 21 N -0.527 5.527 22 C 0.448 3.552 23 O -0.412 6.412 24 O -0.174 6.174 25 C 0.058 3.942 26 C -0.143 4.143 27 C -0.185 4.185 28 C -0.158 4.158 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.381 0.619 35 H 0.252 0.748 36 H 0.394 0.606 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.438 0.562 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 -18.225 0.178 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.116 3.884 3 C 0.012 3.988 4 N -0.370 5.370 5 C -0.359 4.359 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.586 5.586 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.361 5.361 14 C 0.350 3.650 15 O -0.383 6.383 16 C -0.091 4.091 17 C -0.084 4.084 18 C -0.135 4.135 19 C -0.070 4.070 20 C -0.071 4.071 21 N -0.279 5.279 22 C 0.199 3.801 23 O -0.213 6.213 24 O -0.067 6.067 25 C 0.007 3.993 26 C -0.163 4.163 27 C -0.222 4.222 28 C -0.195 4.195 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.216 0.784 35 H 0.062 0.938 36 H 0.229 0.771 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.298 0.702 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.458 -17.568 0.961 18.742 hybrid contribution -0.101 0.943 -0.644 1.147 sum 6.358 -16.624 0.317 17.801 Atomic orbital electron populations 1.21984 0.92941 1.01385 1.04174 1.20089 0.93761 0.92551 0.82037 1.21112 0.98944 0.87723 0.91043 1.42248 1.61190 1.10479 1.23084 1.19278 1.24741 0.87583 1.04255 0.91352 1.24654 1.00852 0.98133 0.97495 1.69643 1.39904 1.35906 1.13166 0.86156 0.77467 0.85299 0.77591 1.20636 1.22046 1.21962 1.45850 1.06871 1.56265 1.27067 1.17676 0.82922 0.79337 0.85085 1.90818 1.54690 1.44716 1.48062 1.19009 0.87717 1.04400 0.97969 1.21239 0.99071 0.95292 0.92797 1.20977 0.94937 1.00419 0.97156 1.20379 0.90998 0.97559 0.98099 1.19435 0.89399 1.02983 0.95304 1.71194 1.11570 1.25521 1.19595 1.22338 0.84110 0.90162 0.83522 1.84702 1.09015 1.78526 1.49077 1.84552 1.12719 1.66375 1.43010 1.19737 0.86774 1.00272 0.92508 1.22533 1.04111 0.90280 0.99371 1.22970 0.97896 0.99769 1.01553 1.22894 0.92372 1.02137 1.02091 0.90904 0.90662 0.92820 0.95867 0.93099 0.78441 0.93803 0.77096 0.83730 0.83774 0.84221 0.70228 0.87396 0.89178 0.89400 0.89621 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.20 37.16 0.30 -1.82 16 2 C 0.20 3.29 0.55 -131.82 -0.07 3.22 16 3 C 0.14 3.01 4.83 -4.04 -0.02 2.99 16 4 N -0.73 -18.46 5.17 -59.90 -0.31 -18.77 16 5 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 6 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 8 N -0.94 -28.21 13.06 55.49 0.72 -27.49 16 9 Si 0.90 23.17 29.55 -169.99 -5.02 18.15 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 N -0.71 -10.94 4.13 -48.62 -0.20 -11.14 16 14 C 0.56 10.07 5.03 -12.44 -0.06 10.01 16 15 O -0.51 -10.80 12.05 -4.61 -0.06 -10.85 16 16 C -0.09 -1.38 5.88 -104.97 -0.62 -2.00 16 17 C -0.06 -0.77 9.53 -39.11 -0.37 -1.15 16 18 C -0.12 -1.16 10.00 -39.68 -0.40 -1.56 16 19 C -0.05 -0.58 10.09 -39.19 -0.40 -0.97 16 20 C 0.04 0.59 7.23 -84.71 -0.61 -0.03 16 21 N -0.53 -7.45 11.38 -12.81 -0.15 -7.60 16 22 C 0.45 6.40 9.54 52.24 0.50 6.90 16 23 O -0.41 -4.21 13.62 -40.55 -0.55 -4.76 16 24 O -0.17 -3.12 10.16 -24.68 -0.25 -3.38 16 25 C 0.06 0.99 6.98 -38.21 -0.27 0.72 16 26 C -0.14 -2.11 4.82 -90.62 -0.44 -2.55 16 27 C -0.18 -2.20 9.68 -26.73 -0.26 -2.46 16 28 C -0.16 -2.26 8.30 -26.73 -0.22 -2.48 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.24 6.86 -51.93 -0.36 0.89 16 31 H 0.05 0.62 6.96 -51.93 -0.36 0.25 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 1.25 5.92 -51.93 -0.31 0.94 16 34 H 0.38 9.82 6.35 -40.82 -0.26 9.56 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.39 4.93 6.53 -40.82 -0.27 4.67 16 37 H 0.15 1.33 6.40 -52.49 -0.34 1.00 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.44 1.74 9.06 45.56 0.41 2.15 16 41 H 0.11 1.61 8.07 -51.93 -0.42 1.19 16 42 H 0.09 0.98 7.25 -51.93 -0.38 0.61 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 45 H 0.09 1.39 5.09 -51.92 -0.26 1.12 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -37.32 369.91 -8.03 -45.35 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -4.62 Total: 13.35 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -3.18 Total: 1.56 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: 0.07 Total: -64.99 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.86 Total: -18.99 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.32 -8.03 -45.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753529825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.476 kcal (2) G-P(sol) polarization free energy of solvation -37.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds