Wall clock time and date at job start Wed Apr 1 2020 04:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46933 * 2 1 4 4 N 1.46504 * 109.47191 * 300.00032 * 3 2 1 5 5 C 1.36933 * 119.99874 * 180.02562 * 4 3 2 6 6 H 1.08004 * 120.00149 * 359.97438 * 5 4 3 7 7 C 1.38816 * 119.99649 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00300 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99810 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47382 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47363 * 119.99875 * 9 7 5 12 12 H 1.48501 * 109.46997 * 239.99712 * 9 7 5 13 13 N 1.46494 * 109.46867 * 239.99987 * 2 1 3 14 14 C 1.34779 * 119.99544 * 173.96740 * 13 2 1 15 15 O 1.21587 * 120.00254 * 5.27415 * 14 13 2 16 16 C 1.47595 * 119.99814 * 185.27774 * 14 13 2 17 17 C 1.39558 * 120.21420 * 359.72177 * 16 14 13 18 18 C 1.38187 * 120.28432 * 179.82569 * 17 16 14 19 19 C 1.38026 * 120.59779 * 0.40901 * 18 17 16 20 20 C 1.39487 * 120.06503 * 359.83037 * 19 18 17 21 21 N 1.36208 * 133.65498 * 179.97438 * 20 19 18 22 22 C 1.30604 * 108.67608 * 180.02562 * 21 20 19 23 23 O 1.35191 * 124.94208 * 180.02562 * 22 21 20 24 24 O 1.34415 * 110.11120 * 359.97438 * 22 21 20 25 25 C 1.35014 * 108.21671 * 0.02562 * 24 22 21 26 26 C 1.53002 * 109.46914 * 119.99728 * 2 1 3 27 27 C 1.52997 * 117.50018 * 54.46013 * 26 2 1 28 28 C 1.52997 * 60.00131 * 107.48681 * 27 26 2 29 29 H 1.08998 * 109.46914 * 299.99951 * 1 2 3 30 30 H 1.08997 * 109.47188 * 60.00045 * 1 2 3 31 31 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47628 * 59.99968 * 3 2 1 33 33 H 1.09003 * 109.46839 * 179.97438 * 3 2 1 34 34 H 0.96998 * 119.99416 * 359.97438 * 4 3 2 35 35 H 0.96996 * 120.00241 * 180.02562 * 8 7 5 36 36 H 0.96995 * 120.00303 * 353.96035 * 13 2 1 37 37 H 1.08000 * 119.85880 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.69901 * 180.23333 * 18 17 16 39 39 H 1.07999 * 119.96900 * 179.79904 * 19 18 17 40 40 H 0.96699 * 114.00462 * 359.97318 * 23 22 21 41 41 H 1.09002 * 115.56297 * 268.76572 * 26 2 1 42 42 H 1.09004 * 117.49816 * 359.97438 * 27 26 2 43 43 H 1.08994 * 117.50040 * 214.97546 * 27 26 2 44 44 H 1.09008 * 117.50001 * 107.49037 * 28 27 26 45 45 H 1.09008 * 117.50257 * 252.51063 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8828 3.4440 -1.4131 6 1 2.5038 3.9689 -0.7022 7 6 1.4196 4.0985 -2.5463 8 7 0.6626 3.4590 -3.4124 9 14 1.8709 5.8869 -2.8419 10 1 2.7246 6.3727 -1.7281 11 1 2.6128 6.0051 -4.1228 12 1 0.6333 6.7049 -2.9094 13 7 2.0183 -0.6906 -1.1961 14 6 3.3373 -0.7085 -1.4726 15 8 4.1307 -0.2357 -0.6819 16 6 3.8186 -1.3022 -2.7353 17 6 2.9124 -1.8514 -3.6434 18 6 3.3611 -2.4043 -4.8277 19 6 4.7087 -2.4293 -5.1252 20 6 5.6322 -1.8904 -4.2295 21 7 6.9888 -1.7684 -4.2373 22 6 7.3618 -1.1765 -3.1345 23 8 8.6411 -0.8902 -2.8039 24 8 6.2887 -0.8924 -2.3766 25 6 5.1867 -1.3235 -3.0268 26 6 2.0400 -0.7212 1.2493 27 6 1.5317 -2.1420 1.5018 28 6 2.9739 -1.9156 1.0437 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 0.9943 1.6615 -1.8348 35 1 0.3392 3.9162 -4.2043 36 1 1.3924 -1.1350 -1.7891 37 1 1.8556 -1.8420 -3.4208 38 1 2.6512 -2.8233 -5.5254 39 1 5.0484 -2.8669 -6.0523 40 1 9.2895 -1.1649 -3.4665 41 1 2.2167 -0.0880 2.1187 42 1 0.8337 -2.5629 0.7780 43 1 1.3740 -2.4436 2.5372 44 1 3.7650 -2.0682 1.7780 45 1 3.2250 -2.1876 0.0184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753529825.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:15 Heat of formation + Delta-G solvation = -0.054585 kcal Electronic energy + Delta-G solvation = -31297.861749 eV Core-core repulsion = 27090.490986 eV Total energy + Delta-G solvation = -4207.370763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.46153 -41.72930 -39.61359 -38.82312 -38.19262 -36.61355 -35.66090 -34.96475 -33.35617 -31.98174 -31.03347 -30.23641 -27.66910 -25.78273 -25.36580 -24.24979 -24.04955 -23.11816 -22.91362 -21.73872 -20.47716 -20.08556 -19.47889 -19.32652 -18.67836 -18.38890 -17.54778 -17.23475 -16.92947 -16.38695 -16.00336 -15.88169 -15.39055 -15.37654 -15.06388 -14.98497 -14.73049 -14.63897 -14.46924 -13.67039 -13.56428 -13.45712 -13.30767 -13.17686 -13.01680 -12.92516 -12.82872 -12.42272 -12.29114 -12.15864 -12.08817 -11.99844 -11.96366 -11.79170 -11.27723 -11.10187 -10.96859 -10.49401 -10.03733 -9.84889 -9.40843 -8.93511 -7.96585 -5.21524 -0.61536 0.00413 0.56578 1.07953 1.41659 1.42688 1.52268 1.90618 2.13523 2.38184 2.52835 2.68490 2.95623 3.27415 3.36847 3.60239 3.65872 3.78185 3.88433 3.99663 4.00073 4.16625 4.17919 4.24551 4.36295 4.36850 4.55085 4.58985 4.75087 4.80609 4.81320 4.90432 4.92387 4.98114 5.08486 5.14319 5.19392 5.21437 5.28176 5.32278 5.38857 5.46179 5.47019 5.68364 5.90310 6.27230 6.52353 6.61534 7.31265 7.34829 8.08312 8.38949 9.26504 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007934 B = 0.004628 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3528.141471 B = 6048.971415 C = 7725.590175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.210 3.790 3 C 0.141 3.859 4 N -0.727 5.727 5 C -0.243 4.243 6 H 0.058 0.942 7 C -0.065 4.065 8 N -0.958 5.958 9 Si 0.963 3.037 10 H -0.277 1.277 11 H -0.294 1.294 12 H -0.285 1.285 13 N -0.697 5.697 14 C 0.558 3.442 15 O -0.555 6.555 16 C -0.124 4.124 17 C -0.054 4.054 18 C -0.101 4.101 19 C -0.043 4.043 20 C 0.021 3.979 21 N -0.524 5.524 22 C 0.440 3.560 23 O -0.408 6.408 24 O -0.214 6.214 25 C 0.021 3.979 26 C -0.163 4.163 27 C -0.144 4.144 28 C -0.171 4.171 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.380 0.620 35 H 0.252 0.748 36 H 0.410 0.590 37 H 0.173 0.827 38 H 0.194 0.806 39 H 0.173 0.827 40 H 0.461 0.539 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.818 -20.204 -1.236 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.123 3.877 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.375 4.375 6 H 0.076 0.924 7 C -0.258 4.258 8 N -0.609 5.609 9 Si 0.792 3.208 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.211 1.211 13 N -0.350 5.350 14 C 0.347 3.653 15 O -0.434 6.434 16 C -0.128 4.128 17 C -0.073 4.073 18 C -0.119 4.119 19 C -0.062 4.062 20 C -0.089 4.089 21 N -0.276 5.276 22 C 0.191 3.809 23 O -0.213 6.213 24 O -0.107 6.107 25 C -0.029 4.029 26 C -0.182 4.182 27 C -0.181 4.181 28 C -0.209 4.209 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.213 0.787 35 H 0.061 0.939 36 H 0.247 0.753 37 H 0.190 0.810 38 H 0.211 0.789 39 H 0.190 0.810 40 H 0.325 0.675 41 H 0.117 0.883 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.097 0.903 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.740 -19.580 -0.466 20.151 hybrid contribution 0.503 1.529 -0.229 1.626 sum 5.244 -18.051 -0.695 18.810 Atomic orbital electron populations 1.21923 0.90861 1.03622 1.03165 1.19904 0.95021 0.89427 0.83302 1.21122 0.96928 0.91264 0.89338 1.42268 1.60992 1.09651 1.24120 1.19516 1.24546 0.89192 1.04292 0.92438 1.25340 1.01225 1.01831 0.97398 1.69751 1.40623 1.37163 1.13391 0.85234 0.77318 0.81022 0.77179 1.20243 1.22133 1.21131 1.45725 1.06526 1.55666 1.27045 1.18109 0.83141 0.78632 0.85461 1.90784 1.55925 1.46956 1.49747 1.19158 0.88267 1.06974 0.98368 1.21707 0.99737 0.93407 0.92454 1.21544 0.95194 0.98493 0.96687 1.20941 0.91053 0.95902 0.98293 1.19938 0.89907 1.03693 0.95407 1.71185 1.11529 1.25595 1.19266 1.22654 0.84652 0.90299 0.83321 1.84702 1.08019 1.78312 1.50294 1.84472 1.14104 1.67417 1.44748 1.20172 0.87015 1.01911 0.93806 1.22423 1.06012 0.91455 0.98347 1.23083 0.95803 0.95966 1.03207 1.22833 0.93956 1.02580 1.01496 0.90720 0.92827 0.88865 0.96297 0.96513 0.78651 0.93902 0.75263 0.80982 0.78917 0.80968 0.67494 0.88271 0.87126 0.87272 0.90285 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.20 71.98 0.59 -3.16 16 2 C 0.21 6.86 0.55 3.61 0.00 6.86 16 3 C 0.14 6.35 4.83 86.38 0.42 6.77 16 4 N -0.73 -38.05 5.17 -343.44 -1.78 -39.83 16 5 C -0.24 -14.43 9.99 84.04 0.84 -13.59 16 6 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 7 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 8 N -0.96 -57.90 13.06 21.65 0.28 -57.61 16 9 Si 0.96 48.08 29.55 68.60 2.03 50.11 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 12 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 13 N -0.70 -21.44 4.13 -425.99 -1.76 -23.20 16 14 C 0.56 20.78 5.03 86.71 0.44 21.22 16 15 O -0.56 -25.44 12.05 5.47 0.07 -25.37 16 16 C -0.12 -4.01 5.88 -20.09 -0.12 -4.13 16 17 C -0.05 -1.18 9.53 22.58 0.22 -0.96 16 18 C -0.10 -1.63 10.00 22.21 0.22 -1.40 16 19 C -0.04 -0.85 10.09 22.52 0.23 -0.63 16 20 C 0.02 0.62 7.23 39.25 0.28 0.91 16 21 N -0.52 -14.91 11.38 -422.76 -4.81 -19.72 16 22 C 0.44 13.21 9.54 130.43 1.24 14.46 16 23 O -0.41 -8.68 13.62 -62.45 -0.85 -9.53 16 24 O -0.21 -8.27 10.16 16.16 0.16 -8.10 16 25 C 0.02 0.76 6.98 23.16 0.16 0.92 16 26 C -0.16 -4.76 4.82 -10.79 -0.05 -4.81 16 27 C -0.14 -3.03 9.68 30.59 0.30 -2.74 16 28 C -0.17 -4.92 8.30 30.59 0.25 -4.66 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.05 1.71 6.86 -2.39 -0.02 1.69 16 31 H 0.09 1.78 6.96 -2.39 -0.02 1.77 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.02 0.89 5.92 -2.39 -0.01 0.87 16 34 H 0.38 19.89 6.35 -92.71 -0.59 19.31 16 35 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.41 9.58 6.53 -92.71 -0.61 8.98 16 37 H 0.17 2.60 6.40 -2.91 -0.02 2.58 16 38 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 40 H 0.46 3.65 9.06 -74.06 -0.67 2.98 16 41 H 0.10 3.04 8.07 -2.39 -0.02 3.02 16 42 H 0.11 1.91 7.25 -2.38 -0.02 1.89 16 43 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 45 H 0.08 2.47 5.09 -2.38 -0.01 2.46 16 Total: -1.00 -86.11 369.91 -1.95 -88.06 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.78 Total: 33.51 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 5.49 Total: 11.68 kcal Atomic # 7 Polarization: -132.30 SS G_CDS: -8.07 Total: -140.37 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.62 Total: -43.00 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -86.11 -1.95 -88.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753529825.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.007 kcal (2) G-P(sol) polarization free energy of solvation -86.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds