Wall clock time and date at job start Wed Apr 1 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47262 * 2 1 4 4 C 1.52998 * 109.47373 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47167 * 54.99558 * 4 3 2 6 6 C 1.50697 * 109.47244 * 175.00261 * 4 3 2 7 7 O 1.21279 * 119.99917 * 34.99469 * 6 4 3 8 8 N 1.34780 * 119.99723 * 214.99925 * 6 4 3 9 9 C 1.46501 * 119.99569 * 179.97438 * 8 6 4 10 10 C 1.50697 * 109.46820 * 179.97438 * 9 8 6 11 11 C 1.29454 * 117.69309 * 95.00482 * 10 9 8 12 12 C 1.50319 * 123.65308 * 180.57644 * 11 10 9 13 13 N 1.47013 * 109.16670 * 349.27852 * 12 11 10 14 14 C 1.36927 * 121.37514 * 222.96985 * 13 12 11 15 15 H 1.08007 * 119.99875 * 155.97934 * 14 13 12 16 16 C 1.38816 * 120.00301 * 335.97289 * 14 13 12 17 17 N 1.31613 * 120.00223 * 344.50115 * 16 14 13 18 18 Si 1.86807 * 120.00023 * 164.49546 * 16 14 13 19 19 H 1.48497 * 109.46704 * 94.45760 * 18 16 14 20 20 H 1.48496 * 109.46994 * 214.45860 * 18 16 14 21 21 H 1.48496 * 109.47070 * 334.45894 * 18 16 14 22 22 C 1.47338 * 117.24593 * 42.94916 * 13 12 11 23 23 C 1.49963 * 117.69536 * 275.22126 * 10 9 8 24 24 S 1.81404 * 109.46943 * 295.00042 * 4 3 2 25 25 N 1.65602 * 104.44829 * 300.00029 * 24 4 3 26 26 O 1.42105 * 110.54427 * 51.62268 * 24 4 3 27 27 O 1.42095 * 110.54403 * 188.37537 * 24 4 3 28 28 H 1.08997 * 109.47234 * 59.99650 * 1 2 3 29 29 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46772 * 299.99599 * 1 2 3 31 31 H 1.09003 * 109.47258 * 239.99951 * 2 1 3 32 32 H 1.09002 * 109.47650 * 120.00217 * 2 1 3 33 33 H 1.08996 * 109.46689 * 59.99969 * 3 2 1 34 34 H 1.09002 * 109.46965 * 300.00636 * 3 2 1 35 35 H 0.96993 * 120.00144 * 359.97438 * 8 6 4 36 36 H 1.09002 * 109.47101 * 60.00511 * 9 8 6 37 37 H 1.08996 * 109.47574 * 300.00035 * 9 8 6 38 38 H 1.07998 * 118.17606 * 0.85593 * 11 10 9 39 39 H 1.09003 * 109.52678 * 109.18260 * 12 11 10 40 40 H 1.08996 * 109.52663 * 229.37273 * 12 11 10 41 41 H 0.97000 * 120.00990 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.78220 * 57.81154 * 22 13 12 43 43 H 1.08996 * 109.77666 * 178.61809 * 22 13 12 44 44 H 1.09002 * 109.43565 * 40.82068 * 23 10 9 45 45 H 1.08996 * 109.13473 * 281.43391 * 23 10 9 46 46 H 0.96996 * 119.99720 * 0.02562 * 25 24 4 47 47 H 0.96998 * 120.00061 * 179.97438 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8427 6 6 4.0722 2.8579 -0.1244 7 8 3.4634 3.7656 0.4013 8 7 5.1981 3.1151 -0.8194 9 6 5.6860 4.4912 -0.9401 10 6 6.9508 4.5055 -1.7593 11 6 6.8440 4.7460 -3.0268 12 6 8.0141 4.7799 -3.9698 13 7 9.2615 4.7593 -3.1921 14 6 10.3164 5.5703 -3.5151 15 1 11.0419 5.8386 -2.7612 16 6 10.4536 6.0476 -4.8114 17 7 9.7702 5.4960 -5.7916 18 14 11.6081 7.4731 -5.1645 19 1 12.9313 6.9460 -5.5845 20 1 11.0414 8.3114 -6.2514 21 1 11.7692 8.2951 -3.9383 22 6 9.3294 3.8303 -2.0505 23 6 8.2439 4.2353 -1.0496 24 16 4.1753 0.7195 1.5491 25 7 3.5575 1.7004 2.7317 26 8 3.5627 -0.5410 1.7839 27 8 5.5826 0.8819 1.6588 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 5.6851 2.3892 -1.2395 36 1 5.8919 4.8921 0.0523 37 1 4.9288 5.1036 -1.4296 38 1 5.8598 4.9372 -3.4284 39 1 7.9792 3.9096 -4.6252 40 1 7.9732 5.6897 -4.5686 41 1 9.8657 5.8297 -6.6973 42 1 9.1530 2.8108 -2.3935 43 1 10.3097 3.8970 -1.5786 44 1 8.1005 3.4308 -0.3282 45 1 8.5575 5.1365 -0.5228 46 1 3.0061 2.4614 2.4915 47 1 3.7464 1.5135 3.6645 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755890354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:20 Heat of formation + Delta-G solvation = -78.202156 kcal Electronic energy + Delta-G solvation = -28872.899728 eV Core-core repulsion = 24797.584184 eV Total energy + Delta-G solvation = -4075.315545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.25944 -37.94172 -37.66237 -36.37375 -35.88900 -35.13308 -33.43186 -33.05722 -31.47581 -30.72491 -29.75263 -27.22473 -25.36491 -23.95588 -22.78532 -21.84168 -21.26009 -21.03105 -19.87847 -18.49599 -18.29415 -17.65435 -17.13364 -16.49977 -16.13687 -16.01944 -15.68979 -15.27655 -15.02799 -14.61227 -14.35737 -14.20318 -13.90812 -13.72233 -13.48020 -13.28635 -13.00827 -12.82277 -12.54330 -12.50256 -12.43537 -12.34632 -12.12715 -11.91815 -11.60601 -11.44326 -11.41400 -11.34738 -10.96194 -10.76083 -10.71969 -10.66999 -10.47522 -10.36139 -10.23505 -9.86170 -9.65768 -9.24071 -8.73084 -8.14016 -6.78949 -5.83991 -3.22490 -0.32161 2.17320 2.27102 2.52919 3.07623 3.16087 3.35388 3.42659 3.45146 3.63419 4.06860 4.38213 4.44132 4.46265 4.66362 4.74555 5.02045 5.08861 5.21061 5.25870 5.35168 5.40560 5.43494 5.52076 5.68133 5.71453 5.75035 5.80490 5.83017 6.01787 6.03503 6.12440 6.18761 6.31985 6.45030 6.70098 6.76394 6.83732 7.08192 7.16759 7.19534 7.30041 7.66882 7.76570 7.79266 8.33749 9.15328 9.78077 10.35913 11.26666 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022916 B = 0.002295 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.573311 B =12199.153091 C =12657.886768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.086 4.086 4 C -0.617 4.617 5 H 0.162 0.838 6 C 0.529 3.471 7 O -0.528 6.528 8 N -0.702 5.702 9 C 0.154 3.846 10 C -0.168 4.168 11 C -0.122 4.122 12 C 0.193 3.807 13 N -0.595 5.595 14 C -0.245 4.245 15 H 0.069 0.931 16 C -0.002 4.002 17 N -0.910 5.910 18 Si 0.905 3.095 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.143 3.857 23 C -0.093 4.093 24 S 2.630 3.370 25 N -1.245 6.245 26 O -0.947 6.947 27 O -0.947 6.947 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.406 0.594 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.094 0.906 41 H 0.254 0.746 42 H 0.024 0.976 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.420 0.580 47 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.843 -10.082 13.252 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.207 4.207 3 C -0.125 4.125 4 C -0.727 4.727 5 H 0.180 0.820 6 C 0.312 3.688 7 O -0.406 6.406 8 N -0.352 5.352 9 C 0.033 3.967 10 C -0.168 4.168 11 C -0.143 4.143 12 C 0.068 3.932 13 N -0.319 5.319 14 C -0.374 4.374 15 H 0.087 0.913 16 C -0.199 4.199 17 N -0.556 5.556 18 Si 0.734 3.266 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.017 3.983 23 C -0.133 4.133 24 S 2.717 3.283 25 N -0.922 5.922 26 O -0.936 6.936 27 O -0.936 6.936 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.249 0.751 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.594 -10.234 13.402 24.370 hybrid contribution 0.259 1.127 -0.815 1.415 sum -17.335 -9.107 12.586 23.278 Atomic orbital electron populations 1.21688 0.94835 1.02086 1.01924 1.22264 0.97526 0.95312 1.05595 1.21302 0.86390 0.99164 1.05647 1.30669 1.09737 1.06888 1.25437 0.82046 1.19139 0.81429 0.88034 0.80232 1.90730 1.56928 1.45379 1.47520 1.46224 1.25215 1.11421 1.52344 1.20611 0.94344 0.81181 1.00605 1.20482 0.94042 1.07471 0.94847 1.23316 1.00644 0.94715 0.95577 1.19768 0.81072 1.01851 0.90477 1.44131 1.12178 1.43561 1.31982 1.19187 1.03552 1.21576 0.93133 0.91320 1.24988 0.99343 1.00322 0.95294 1.69999 1.44939 1.41272 0.99377 0.86238 0.80310 0.82345 0.77665 1.21475 1.21575 1.20463 1.20960 0.96075 0.92423 0.88852 1.20789 0.93701 1.00623 0.98138 1.04509 0.74376 0.74090 0.75335 1.52978 1.70846 1.46691 1.21683 1.93560 1.77147 1.40064 1.82789 1.93663 1.29859 1.85809 1.84265 0.92747 0.92220 0.92482 0.91195 0.87478 0.89722 0.89313 0.75886 0.90892 0.91095 0.88775 0.94053 0.88798 0.93605 0.95847 0.92315 0.92374 0.91643 0.75114 0.74887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.15 0.37 -0.55 16 2 C -0.17 -1.19 5.65 -26.73 -0.15 -1.34 16 3 C -0.09 -0.62 4.21 -26.73 -0.11 -0.74 16 4 C -0.62 -4.99 2.75 -27.89 -0.08 -5.07 16 5 H 0.16 0.87 8.11 -51.92 -0.42 0.45 16 6 C 0.53 5.91 6.59 -10.99 -0.07 5.83 16 7 O -0.53 -6.94 15.50 5.56 0.09 -6.86 16 8 N -0.70 -8.32 5.55 -61.47 -0.34 -8.66 16 9 C 0.15 2.14 5.66 -5.19 -0.03 2.11 16 10 C -0.17 -2.75 5.23 -100.99 -0.53 -3.27 16 11 C -0.12 -2.20 9.47 -35.78 -0.34 -2.54 16 12 C 0.19 4.42 5.23 -5.10 -0.03 4.40 16 13 N -0.60 -14.55 3.01 -173.67 -0.52 -15.08 16 14 C -0.25 -6.61 9.71 -15.06 -0.15 -6.76 16 15 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 16 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 17 N -0.91 -25.78 11.08 55.49 0.61 -25.17 16 18 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.14 2.91 6.58 -3.53 -0.02 2.89 16 23 C -0.09 -1.60 5.94 -28.19 -0.17 -1.77 16 24 S 2.63 24.30 5.46 -107.50 -0.59 23.71 16 25 N -1.24 -9.06 9.13 60.35 0.55 -8.51 16 26 O -0.95 -10.12 14.89 -57.54 -0.86 -10.98 16 27 O -0.95 -12.24 18.01 -57.54 -1.04 -13.27 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.87 4.90 -51.93 -0.25 0.62 16 33 H 0.08 0.55 6.96 -51.93 -0.36 0.19 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.41 4.26 8.44 -40.82 -0.34 3.92 16 36 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 37 H 0.07 0.98 7.78 -51.93 -0.40 0.57 16 38 H 0.09 1.50 7.73 -52.49 -0.41 1.09 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 2.41 6.41 -51.93 -0.33 2.07 16 41 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.42 2.80 6.95 -34.47 -0.24 2.56 16 47 H 0.42 2.32 8.96 -34.47 -0.31 2.01 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -33.94 387.26 -9.94 -43.88 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.26 Total: 5.61 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.39 Total: -6.95 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.30 Total: -57.41 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.81 Total: -31.11 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: 24.30 SS G_CDS: -0.59 Total: 23.71 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.94 -9.94 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755890354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.325 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds