Wall clock time and date at job start Wed Apr 1 2020 04:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.21288 * 120.00038 * 239.99878 * 12 2 1 14 14 N 1.34777 * 120.00369 * 59.99719 * 12 2 1 15 15 C 1.46505 * 120.00115 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47089 * 59.99886 * 15 14 12 17 17 C 1.53002 * 109.46958 * 180.02562 * 15 14 12 18 18 N 1.46497 * 109.46729 * 180.02562 * 17 15 14 19 19 C 1.36030 * 126.34813 * 265.01727 * 18 17 15 20 20 N 1.30111 * 110.10225 * 180.02562 * 19 18 17 21 21 C 1.35788 * 109.64054 * 0.02562 * 20 19 18 22 22 C 1.39747 * 133.59895 * 180.02562 * 21 20 19 23 23 C 1.36606 * 119.88091 * 179.22427 * 22 21 20 24 24 C 1.38780 * 120.66920 * 0.63389 * 23 22 21 25 25 C 1.37851 * 120.45010 * 359.59992 * 24 23 22 26 26 C 1.38058 * 126.34901 * 84.71688 * 18 17 15 27 27 C 1.50696 * 109.46934 * 299.99804 * 15 14 12 28 28 O 1.20823 * 119.99781 * 145.00245 * 27 15 14 29 29 O 1.34233 * 120.00169 * 325.00303 * 27 15 14 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 34 34 H 0.96995 * 119.99691 * 359.97438 * 14 12 2 35 35 H 1.09002 * 109.47067 * 60.00120 * 16 15 14 36 36 H 1.09000 * 109.46497 * 179.97438 * 16 15 14 37 37 H 1.08996 * 109.46876 * 300.00263 * 16 15 14 38 38 H 1.09002 * 109.46838 * 299.99332 * 17 15 14 39 39 H 1.08998 * 109.47387 * 59.99328 * 17 15 14 40 40 H 1.08001 * 124.95198 * 0.02952 * 19 18 17 41 41 H 1.08001 * 120.05858 * 359.94988 * 22 21 20 42 42 H 1.07998 * 119.66260 * 180.22946 * 23 22 21 43 43 H 1.07994 * 119.77220 * 179.61906 * 24 23 22 44 44 H 1.08005 * 120.15504 * 180.02562 * 25 24 23 45 45 H 0.96694 * 116.99648 * 180.02562 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1948 -0.9406 -3.6508 16 6 1.6843 -2.3830 -3.6507 17 6 1.6854 -0.2188 -4.9000 18 7 2.1728 -0.9101 -6.0962 19 6 3.2882 -0.5978 -6.8096 20 7 3.4221 -1.4170 -7.8115 21 6 2.4003 -2.3113 -7.8095 22 6 2.0578 -3.3850 -8.6359 23 6 0.9454 -4.1283 -8.3598 24 6 0.1407 -3.8211 -7.2717 25 6 0.4566 -2.7635 -6.4458 26 6 1.5885 -2.0027 -6.7050 27 6 3.7017 -0.9411 -3.6510 28 8 4.3055 -1.8896 -4.0933 29 8 4.3733 0.1123 -3.1598 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 0.7094 1.1615 3.4845 34 1 1.1489 0.5386 -2.5435 35 1 0.5943 -2.3826 -3.6505 36 1 2.0470 -2.8967 -4.5409 37 1 2.0475 -2.8968 -2.7607 38 1 0.5954 -0.2182 -4.9001 39 1 2.0493 0.8086 -4.8999 40 1 3.9641 0.2121 -6.5780 41 1 2.6778 -3.6338 -9.4844 42 1 0.6860 -4.9596 -8.9987 43 1 -0.7387 -4.4147 -7.0705 44 1 -0.1728 -2.5289 -5.6000 45 1 5.3389 0.0662 -3.1817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:29 Heat of formation + Delta-G solvation = -67.540557 kcal Electronic energy + Delta-G solvation = -31225.220507 eV Core-core repulsion = 27014.923333 eV Total energy + Delta-G solvation = -4210.297174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.34410 -41.86925 -40.33388 -38.32959 -37.53218 -37.11520 -35.78118 -34.78612 -32.88012 -31.54537 -30.96763 -30.26744 -27.99584 -27.17263 -25.97505 -24.67032 -24.21774 -23.08307 -22.37387 -21.08419 -20.94833 -19.39266 -18.57918 -18.44464 -18.20693 -18.09925 -17.43168 -17.02292 -16.71670 -16.45383 -16.24071 -15.99989 -15.61782 -15.19018 -15.02931 -14.84728 -14.68402 -14.53093 -14.38445 -13.92530 -13.58812 -13.31790 -13.24875 -13.07382 -12.96064 -12.80700 -12.72255 -12.61563 -12.58476 -12.52224 -12.38732 -12.18169 -12.03716 -11.87839 -11.37814 -11.02547 -10.95927 -10.60508 -10.34367 -10.28273 -9.31176 -9.08349 -8.15630 -6.24590 0.01950 0.56989 0.96763 1.34338 1.38831 1.41294 1.51846 1.71023 1.83020 2.06521 2.24464 2.46384 2.94227 3.14845 3.21632 3.34261 3.39172 3.59247 3.87884 4.03045 4.09615 4.19586 4.21959 4.36052 4.50214 4.51839 4.55098 4.62617 4.66397 4.80452 4.85521 4.98209 5.05741 5.07670 5.21213 5.27189 5.46581 5.48319 5.53562 5.58796 5.61608 5.76825 5.96362 5.97977 6.09393 6.23668 6.64473 6.83182 6.84394 6.85234 7.37846 7.47714 8.89669 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020345 B = 0.002891 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.909875 B = 9684.523049 C =10114.265856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.030 3.970 3 H 0.048 0.952 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.282 1.282 12 C 0.534 3.466 13 O -0.575 6.575 14 N -0.705 5.705 15 C 0.177 3.823 16 C -0.151 4.151 17 C 0.115 3.885 18 N -0.486 5.486 19 C 0.263 3.737 20 N -0.529 5.529 21 C 0.010 3.990 22 C -0.088 4.088 23 C -0.124 4.124 24 C -0.103 4.103 25 C -0.117 4.117 26 C 0.043 3.957 27 C 0.479 3.521 28 O -0.536 6.536 29 O -0.505 6.505 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.265 0.735 34 H 0.423 0.577 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.234 0.766 41 H 0.130 0.870 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.142 0.858 45 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.758 0.794 -20.655 21.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 H 0.065 0.935 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.207 1.207 12 C 0.324 3.676 13 O -0.452 6.452 14 N -0.363 5.363 15 C 0.088 3.912 16 C -0.209 4.209 17 C -0.008 4.008 18 N -0.177 5.177 19 C -0.023 4.023 20 N -0.248 5.248 21 C -0.107 4.107 22 C -0.108 4.108 23 C -0.144 4.144 24 C -0.122 4.122 25 C -0.137 4.137 26 C -0.065 4.065 27 C 0.320 3.680 28 O -0.425 6.425 29 O -0.317 6.317 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.263 0.737 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.250 0.750 41 H 0.148 0.852 42 H 0.173 0.827 43 H 0.176 0.824 44 H 0.160 0.840 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -3.993 0.045 -21.047 21.422 hybrid contribution 0.825 -0.218 1.812 2.003 sum -3.168 -0.173 -19.235 19.495 Atomic orbital electron populations 1.21589 0.94553 0.99633 1.02222 1.18778 0.95593 0.95994 0.88702 0.93473 1.21270 1.31506 1.12638 0.91267 0.93725 1.25467 0.95242 0.95720 1.01065 1.69926 1.37050 1.23367 1.24248 0.85729 0.78411 0.78767 0.79766 1.20271 1.19934 1.20736 1.21610 0.77607 0.83326 0.85093 1.90565 1.39325 1.28333 1.87023 1.45823 1.54956 1.32830 1.02657 1.20523 0.85484 0.96462 0.88767 1.22214 1.02619 0.93092 1.03001 1.22236 1.04041 0.96863 0.77625 1.45221 1.22628 1.25888 1.23926 1.25800 0.88555 0.99602 0.88321 1.70381 1.24322 1.07280 1.22831 1.19487 0.94167 0.99192 0.97823 1.20286 0.98249 0.93204 0.99014 1.21008 0.94377 1.00379 0.98676 1.21332 1.00482 0.96349 0.94076 1.20407 0.95082 0.96317 1.01915 1.19076 0.98722 0.92449 0.96280 1.23967 0.92362 0.79309 0.72381 1.90715 1.70773 1.36070 1.44924 1.84515 1.27808 1.43532 1.75841 0.95785 0.91269 0.91932 0.92607 0.73719 0.88280 0.91183 0.93381 0.83377 0.83483 0.74951 0.85197 0.82714 0.82363 0.84000 0.71738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 8.87 71.98 0.64 -4.25 16 2 C 0.03 1.39 2.64 -12.29 -0.03 1.35 16 3 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.53 -29.09 8.37 25.60 0.21 -28.88 16 5 H 0.04 2.68 6.75 -2.91 -0.02 2.66 16 6 C 0.02 1.32 5.30 84.65 0.45 1.77 16 7 N -0.91 -48.47 11.32 21.45 0.24 -48.23 16 8 Si 0.95 43.81 29.54 68.60 2.03 45.83 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 12 C 0.53 21.50 6.47 87.66 0.57 22.07 16 13 O -0.57 -28.27 12.67 -3.05 -0.04 -28.30 16 14 N -0.70 -18.83 4.77 -426.31 -2.03 -20.86 16 15 C 0.18 4.40 0.85 2.86 0.00 4.41 16 16 C -0.15 -4.33 6.67 71.98 0.48 -3.85 16 17 C 0.11 1.69 5.24 86.38 0.45 2.14 16 18 N -0.49 -9.85 2.36 -520.27 -1.23 -11.07 16 19 C 0.26 5.85 11.67 180.06 2.10 7.95 16 20 N -0.53 -15.01 11.27 -192.03 -2.16 -17.18 16 21 C 0.01 0.28 7.23 39.45 0.29 0.56 16 22 C -0.09 -1.99 10.05 22.25 0.22 -1.76 16 23 C -0.12 -2.12 9.96 22.02 0.22 -1.90 16 24 C -0.10 -1.65 10.03 22.31 0.22 -1.43 16 25 C -0.12 -2.18 8.52 22.32 0.19 -1.99 16 26 C 0.04 0.99 5.31 38.86 0.21 1.20 16 27 C 0.48 14.57 4.85 71.23 0.35 14.91 16 28 O -0.54 -20.09 16.68 21.97 0.37 -19.72 16 29 O -0.50 -13.17 13.03 -51.44 -0.67 -13.84 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 3.18 6.07 -2.39 -0.01 3.16 16 32 H 0.06 1.84 7.56 -2.39 -0.02 1.82 16 33 H 0.26 13.48 8.31 -92.70 -0.77 12.71 16 34 H 0.42 7.95 7.89 -92.71 -0.73 7.22 16 35 H 0.10 2.19 7.22 -2.39 -0.02 2.17 16 36 H 0.07 2.11 5.34 -2.39 -0.01 2.10 16 37 H 0.05 1.83 6.17 -2.39 -0.01 1.82 16 38 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.15 1.23 8.13 -2.39 -0.02 1.21 16 40 H 0.23 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 42 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.14 2.04 6.91 -2.91 -0.02 2.02 16 45 H 0.42 8.04 9.10 -74.06 -0.67 7.37 16 Total: -1.00 -81.89 371.09 2.72 -79.17 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.34 Total: 21.91 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.57 Total: 12.30 kcal Atomic # 7 Polarization: -92.16 SS G_CDS: -5.18 Total: -97.34 kcal Atomic # 8 Polarization: -61.53 SS G_CDS: -0.34 Total: -61.87 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -81.89 2.72 -79.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.628 kcal (2) G-P(sol) polarization free energy of solvation -81.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds