Wall clock time and date at job start Wed Apr 1 2020 03:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34236 * 116.99829 * 2 1 4 4 O 1.20819 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99593 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46564 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47024 * 179.97438 * 6 5 3 8 8 C 1.36935 * 120.00240 * 266.11319 * 7 6 5 9 9 H 1.08001 * 120.00405 * 146.13745 * 8 7 6 10 10 C 1.38810 * 119.99792 * 326.14468 * 8 7 6 11 11 N 1.31626 * 119.99953 * 337.62566 * 10 8 7 12 12 Si 1.86800 * 120.00115 * 157.63074 * 10 8 7 13 13 H 1.48503 * 109.47200 * 90.00020 * 12 10 8 14 14 H 1.48501 * 109.47141 * 209.99399 * 12 10 8 15 15 H 1.48494 * 109.47419 * 329.99604 * 12 10 8 16 16 C 1.46502 * 119.99982 * 86.11164 * 7 6 5 17 17 H 1.08997 * 109.47223 * 0.02562 * 16 7 6 18 18 C 1.53003 * 109.46987 * 240.00155 * 16 7 6 19 19 C 1.50700 * 109.47024 * 120.00045 * 16 7 6 20 20 O 1.21395 * 120.00130 * 20.00323 * 19 16 7 21 21 C 1.41753 * 119.99938 * 199.99804 * 19 16 7 22 22 C 1.37840 * 126.94554 * 0.02562 * 21 19 16 23 23 N 1.35302 * 109.51148 * 179.97438 * 22 21 19 24 24 H 0.97006 * 124.62121 * 179.97438 * 23 22 21 25 25 C 1.37760 * 110.74699 * 359.97438 * 23 22 21 26 26 N 1.32707 * 132.74136 * 179.97438 * 25 23 22 27 27 C 1.31606 * 121.71670 * 179.97438 * 26 25 23 28 28 C 1.38558 * 121.53252 * 359.96526 * 27 26 25 29 29 C 1.38373 * 119.30047 * 0.06077 * 28 27 26 30 30 C 1.39292 * 118.06424 * 359.95870 * 29 28 27 31 31 H 1.08999 * 109.47582 * 59.99884 * 1 2 3 32 32 H 1.09003 * 109.47102 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46991 * 299.99849 * 1 2 3 34 34 H 1.08995 * 109.47193 * 60.00171 * 5 3 2 35 35 H 1.08996 * 109.47010 * 299.99367 * 5 3 2 36 36 H 1.08995 * 109.47334 * 60.00125 * 6 5 3 37 37 H 1.09005 * 109.47367 * 299.99564 * 6 5 3 38 38 H 0.97002 * 119.99919 * 180.02562 * 11 10 8 39 39 H 1.09006 * 109.46987 * 179.97438 * 18 16 7 40 40 H 1.08997 * 109.47063 * 300.00005 * 18 16 7 41 41 H 1.09001 * 109.47135 * 60.00114 * 18 16 7 42 42 H 1.08002 * 125.23851 * 359.95941 * 22 21 19 43 43 H 1.08003 * 119.22997 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.35035 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.96821 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 7 5.4630 2.8189 0.0002 8 6 6.1426 2.9344 1.1834 9 1 7.1109 2.4698 1.2977 10 6 5.5869 3.6485 2.2361 11 7 4.6664 4.5593 2.0001 12 14 6.1454 3.3170 3.9875 13 1 7.2908 4.2026 4.3179 14 1 5.0249 3.5870 4.9239 15 1 6.5645 1.8979 4.1133 16 6 6.1990 2.7720 -1.2656 17 1 5.4947 2.6797 -2.0923 18 6 7.1430 1.5679 -1.2624 19 6 7.0002 4.0380 -1.4280 20 8 7.2604 4.7203 -0.4582 21 6 7.4502 4.4321 -2.7132 22 6 7.2383 3.7708 -3.9039 23 7 7.8223 4.4581 -4.9126 24 1 7.8082 4.1879 -5.8441 25 6 8.4395 5.5937 -4.4360 26 7 9.1278 6.5610 -5.0291 27 6 9.6326 7.5681 -4.3487 28 6 9.4699 7.6697 -2.9765 29 6 8.7614 6.6895 -2.3043 30 6 8.2375 5.6338 -3.0468 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.9556 0.7810 -0.8908 35 1 3.9563 0.7807 0.8892 36 1 3.6107 3.2357 0.8906 37 1 3.6099 3.2369 -0.8894 38 1 4.2783 5.0586 2.7357 39 1 7.6903 1.5327 -2.2044 40 1 7.8474 1.6606 -0.4357 41 1 6.5635 0.6522 -1.1449 42 1 6.6908 2.8465 -4.0146 43 1 10.1866 8.3334 -4.8723 44 1 9.8927 8.5043 -2.4371 45 1 8.6185 6.7415 -1.2351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879474491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:39 Heat of formation + Delta-G solvation = -16.958919 kcal Electronic energy + Delta-G solvation = -30283.107602 eV Core-core repulsion = 26075.003812 eV Total energy + Delta-G solvation = -4208.103790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.55120 -39.95258 -38.54199 -37.64748 -36.25425 -35.42546 -32.78915 -32.12570 -31.39598 -30.23388 -29.48083 -28.38964 -27.20928 -24.90346 -24.06949 -23.69608 -22.57177 -22.37688 -20.70640 -19.85508 -18.61328 -17.92482 -17.19299 -16.78381 -16.18147 -16.13353 -15.93507 -15.85028 -15.14764 -14.95724 -14.90587 -14.54034 -14.01034 -13.63698 -13.53282 -13.34184 -13.24269 -12.92613 -12.76067 -12.71492 -12.26479 -12.14460 -12.00256 -11.91966 -11.61337 -11.36063 -11.31278 -10.96585 -10.73453 -10.60093 -10.50258 -10.19886 -10.10880 -9.98715 -9.88340 -9.67745 -9.47391 -8.53098 -8.49955 -8.37165 -7.91318 -6.62344 -5.69642 -3.20360 0.95329 1.37303 2.09407 2.69048 2.74086 3.15224 3.44662 3.51862 3.52243 3.75428 4.10181 4.46668 4.55102 4.68122 4.81940 5.03570 5.10590 5.22391 5.26320 5.26465 5.31900 5.45338 5.45899 5.52074 5.56876 5.69527 5.86436 5.93197 5.97003 6.00413 6.20356 6.26193 6.32238 6.34195 6.44060 6.44731 6.52631 6.77204 6.85265 6.89965 6.94285 7.00536 7.18166 7.75714 7.92766 7.98891 8.25016 8.51747 8.79489 9.22022 9.84456 10.36270 11.34148 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.003424 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.236340 B = 8175.981470 C = 9881.195286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.460 3.540 4 O -0.506 6.506 5 C -0.130 4.130 6 C 0.157 3.843 7 N -0.562 5.562 8 C -0.240 4.240 9 H 0.065 0.935 10 C 0.016 3.984 11 N -0.879 5.879 12 Si 0.892 3.108 13 H -0.287 1.287 14 H -0.291 1.291 15 H -0.279 1.279 16 C 0.127 3.873 17 H 0.068 0.932 18 C -0.150 4.150 19 C 0.385 3.615 20 O -0.406 6.406 21 C -0.229 4.229 22 C 0.117 3.883 23 N -0.566 5.566 24 H 0.420 0.580 25 C 0.268 3.732 26 N -0.501 5.501 27 C 0.129 3.871 28 C -0.201 4.201 29 C -0.017 4.017 30 C -0.111 4.111 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.031 0.969 38 H 0.253 0.747 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.190 0.810 43 H 0.159 0.841 44 H 0.137 0.863 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 -4.642 -13.256 14.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.287 6.287 3 C 0.303 3.697 4 O -0.393 6.393 5 C -0.170 4.170 6 C 0.030 3.970 7 N -0.280 5.280 8 C -0.369 4.369 9 H 0.083 0.917 10 C -0.185 4.185 11 N -0.521 5.521 12 Si 0.722 3.278 13 H -0.214 1.214 14 H -0.217 1.217 15 H -0.204 1.204 16 C 0.018 3.982 17 H 0.086 0.914 18 C -0.209 4.209 19 C 0.257 3.743 20 O -0.276 6.276 21 C -0.238 4.238 22 C -0.015 4.015 23 N -0.171 5.171 24 H 0.258 0.742 25 C 0.037 3.963 26 N -0.214 5.214 27 C -0.037 4.037 28 C -0.222 4.222 29 C -0.044 4.044 30 C -0.117 4.117 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.207 0.793 43 H 0.176 0.824 44 H 0.155 0.845 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.417 -3.961 -13.601 14.371 hybrid contribution -0.163 -0.126 1.163 1.182 sum 2.254 -4.088 -12.437 13.285 Atomic orbital electron populations 1.23131 0.77800 1.02821 1.02206 1.86569 1.22467 1.34947 1.84756 1.24524 0.92861 0.80714 0.71649 1.90647 1.67364 1.36269 1.45031 1.22428 0.84485 1.05680 1.04454 1.20875 0.83364 0.88818 1.03975 1.43845 1.00874 1.82978 1.00354 1.18819 1.03361 1.26647 0.88081 0.91732 1.25044 0.99423 0.95060 0.98942 1.69990 1.30210 1.21455 1.30466 0.86472 0.77815 0.78158 0.85372 1.21353 1.21724 1.20407 1.20817 0.93785 0.92296 0.91285 0.91410 1.22083 0.99992 0.98191 1.00656 1.21354 0.78935 0.88478 0.85573 1.90592 1.44812 1.51200 1.41025 1.20733 1.09197 0.97657 0.96218 1.22712 0.95902 0.96902 0.85977 1.41258 1.46186 1.19259 1.10428 0.74229 1.18380 0.98187 0.90060 0.89698 1.66439 1.11899 1.02164 1.40934 1.22359 0.96002 0.93820 0.91479 1.21944 1.03397 1.01105 0.95738 1.21231 0.91529 0.90410 1.01197 1.19698 1.01887 0.97042 0.93071 0.92387 0.88832 0.92249 0.89629 0.87916 0.86874 0.95059 0.93702 0.93900 0.91986 0.92338 0.79288 0.82418 0.84522 0.83675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.77 10.57 -39.27 -0.41 -6.19 16 3 C 0.46 8.40 7.96 36.01 0.29 8.68 16 4 O -0.51 -10.77 15.73 -18.74 -0.29 -11.06 16 5 C -0.13 -2.36 6.14 -27.88 -0.17 -2.53 16 6 C 0.16 3.52 4.50 -4.04 -0.02 3.50 16 7 N -0.56 -12.87 2.32 -166.98 -0.39 -13.26 16 8 C -0.24 -6.23 7.16 -15.06 -0.11 -6.33 16 9 H 0.07 1.70 6.83 -52.49 -0.36 1.34 16 10 C 0.02 0.43 4.93 -17.43 -0.09 0.34 16 11 N -0.88 -25.62 11.32 55.49 0.63 -24.99 16 12 Si 0.89 21.75 29.61 -169.99 -5.03 16.72 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C 0.13 2.36 2.62 -69.08 -0.18 2.18 16 17 H 0.07 1.08 7.28 -51.93 -0.38 0.70 16 18 C -0.15 -2.35 9.14 37.16 0.34 -2.01 16 19 C 0.38 7.82 6.17 -32.97 -0.20 7.61 16 20 O -0.41 -10.20 14.67 5.46 0.08 -10.12 16 21 C -0.23 -3.82 6.11 -104.93 -0.64 -4.46 16 22 C 0.12 1.38 10.97 -16.17 -0.18 1.21 16 23 N -0.57 -6.38 5.95 -11.67 -0.07 -6.45 16 24 H 0.42 3.20 8.96 -40.82 -0.37 2.84 16 25 C 0.27 3.97 8.40 -155.46 -1.31 2.66 16 26 N -0.50 -7.13 10.39 -12.29 -0.13 -7.26 16 27 C 0.13 1.57 11.14 -17.53 -0.20 1.37 16 28 C -0.20 -2.56 10.11 -39.41 -0.40 -2.96 16 29 C -0.02 -0.28 9.91 -39.14 -0.39 -0.67 16 30 C -0.11 -1.87 6.24 -104.91 -0.66 -2.53 16 31 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.11 3.04 5.27 -51.93 -0.27 2.76 16 37 H 0.03 0.70 7.96 -51.93 -0.41 0.29 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.04 0.53 7.90 -51.93 -0.41 0.12 16 40 H 0.06 1.12 6.97 -51.93 -0.36 0.75 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.19 1.47 7.63 -52.49 -0.40 1.07 16 43 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 45 H 0.15 2.53 7.47 -52.49 -0.39 2.14 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -35.94 383.49 -8.55 -44.49 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.87 Total: 4.79 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -2.84 Total: 7.55 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.04 Total: -51.96 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.63 Total: -27.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.94 -8.55 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.530 kcal (2) G-P(sol) polarization free energy of solvation -35.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds