Wall clock time and date at job start Wed Apr 1 2020 03:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34236 * 116.99829 * 2 1 4 4 O 1.20819 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99593 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46564 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47024 * 179.97438 * 6 5 3 8 8 C 1.36935 * 120.00240 * 266.11319 * 7 6 5 9 9 H 1.08001 * 120.00405 * 146.13745 * 8 7 6 10 10 C 1.38810 * 119.99792 * 326.14468 * 8 7 6 11 11 N 1.31626 * 119.99953 * 337.62566 * 10 8 7 12 12 Si 1.86800 * 120.00115 * 157.63074 * 10 8 7 13 13 H 1.48503 * 109.47200 * 90.00020 * 12 10 8 14 14 H 1.48501 * 109.47141 * 209.99399 * 12 10 8 15 15 H 1.48494 * 109.47419 * 329.99604 * 12 10 8 16 16 C 1.46502 * 119.99982 * 86.11164 * 7 6 5 17 17 H 1.08997 * 109.47223 * 0.02562 * 16 7 6 18 18 C 1.53003 * 109.46987 * 240.00155 * 16 7 6 19 19 C 1.50700 * 109.47024 * 120.00045 * 16 7 6 20 20 O 1.21395 * 120.00130 * 20.00323 * 19 16 7 21 21 C 1.41753 * 119.99938 * 199.99804 * 19 16 7 22 22 C 1.37840 * 126.94554 * 0.02562 * 21 19 16 23 23 N 1.35302 * 109.51148 * 179.97438 * 22 21 19 24 24 H 0.97006 * 124.62121 * 179.97438 * 23 22 21 25 25 C 1.37760 * 110.74699 * 359.97438 * 23 22 21 26 26 N 1.32707 * 132.74136 * 179.97438 * 25 23 22 27 27 C 1.31606 * 121.71670 * 179.97438 * 26 25 23 28 28 C 1.38558 * 121.53252 * 359.96526 * 27 26 25 29 29 C 1.38373 * 119.30047 * 0.06077 * 28 27 26 30 30 C 1.39292 * 118.06424 * 359.95870 * 29 28 27 31 31 H 1.08999 * 109.47582 * 59.99884 * 1 2 3 32 32 H 1.09003 * 109.47102 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46991 * 299.99849 * 1 2 3 34 34 H 1.08995 * 109.47193 * 60.00171 * 5 3 2 35 35 H 1.08996 * 109.47010 * 299.99367 * 5 3 2 36 36 H 1.08995 * 109.47334 * 60.00125 * 6 5 3 37 37 H 1.09005 * 109.47367 * 299.99564 * 6 5 3 38 38 H 0.97002 * 119.99919 * 180.02562 * 11 10 8 39 39 H 1.09006 * 109.46987 * 179.97438 * 18 16 7 40 40 H 1.08997 * 109.47063 * 300.00005 * 18 16 7 41 41 H 1.09001 * 109.47135 * 60.00114 * 18 16 7 42 42 H 1.08002 * 125.23851 * 359.95941 * 22 21 19 43 43 H 1.08003 * 119.22997 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.35035 * 179.97438 * 28 27 26 45 45 H 1.07997 * 120.96821 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 7 5.4630 2.8189 0.0002 8 6 6.1426 2.9344 1.1834 9 1 7.1109 2.4698 1.2977 10 6 5.5869 3.6485 2.2361 11 7 4.6664 4.5593 2.0001 12 14 6.1454 3.3170 3.9875 13 1 7.2908 4.2026 4.3179 14 1 5.0249 3.5870 4.9239 15 1 6.5645 1.8979 4.1133 16 6 6.1990 2.7720 -1.2656 17 1 5.4947 2.6797 -2.0923 18 6 7.1430 1.5679 -1.2624 19 6 7.0002 4.0380 -1.4280 20 8 7.2604 4.7203 -0.4582 21 6 7.4502 4.4321 -2.7132 22 6 7.2383 3.7708 -3.9039 23 7 7.8223 4.4581 -4.9126 24 1 7.8082 4.1879 -5.8441 25 6 8.4395 5.5937 -4.4360 26 7 9.1278 6.5610 -5.0291 27 6 9.6326 7.5681 -4.3487 28 6 9.4699 7.6697 -2.9765 29 6 8.7614 6.6895 -2.3043 30 6 8.2375 5.6338 -3.0468 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.9556 0.7810 -0.8908 35 1 3.9563 0.7807 0.8892 36 1 3.6107 3.2357 0.8906 37 1 3.6099 3.2369 -0.8894 38 1 4.2783 5.0586 2.7357 39 1 7.6903 1.5327 -2.2044 40 1 7.8474 1.6606 -0.4357 41 1 6.5635 0.6522 -1.1449 42 1 6.6908 2.8465 -4.0146 43 1 10.1866 8.3334 -4.8723 44 1 9.8927 8.5043 -2.4371 45 1 8.6185 6.7415 -1.2351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:38 Heat of formation + Delta-G solvation = -40.554800 kcal Electronic energy + Delta-G solvation = -30284.130797 eV Core-core repulsion = 26075.003812 eV Total energy + Delta-G solvation = -4209.126984 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.63413 -41.35616 -40.01455 -38.76336 -37.70586 -37.05940 -34.03293 -33.74476 -33.05597 -31.41903 -30.74309 -29.73354 -28.44476 -26.59169 -25.51212 -24.77691 -24.05408 -23.42106 -22.17081 -21.38218 -19.87284 -19.28002 -18.60010 -18.04595 -17.61898 -17.48430 -17.32096 -17.00241 -16.65492 -16.34792 -16.21136 -15.74534 -15.67166 -15.11522 -14.92405 -14.77208 -14.57133 -14.25002 -14.15858 -13.86191 -13.71604 -13.40548 -13.30477 -13.03094 -13.00833 -12.83878 -12.77340 -12.59148 -12.50977 -12.39379 -11.96098 -11.78536 -11.72295 -11.45360 -11.38475 -11.34422 -10.62021 -10.42324 -10.00252 -9.55012 -9.04591 -8.51680 -7.71805 -5.23122 -0.15664 0.29149 0.88670 1.30855 1.45802 1.48160 1.55852 1.72481 1.88735 2.46993 2.60272 2.93161 3.36315 3.45513 3.55492 3.72139 3.78014 4.04023 4.06827 4.11252 4.18678 4.35111 4.37704 4.41261 4.44267 4.52274 4.54220 4.56293 4.73021 4.78596 4.87120 4.91486 5.02661 5.07467 5.22482 5.27621 5.32473 5.36741 5.48489 5.57190 5.61513 5.82892 5.85619 5.93631 6.30677 6.54502 6.87307 6.95492 7.22869 7.37251 7.95113 8.41127 9.28566 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.003424 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.236340 B = 8175.981470 C = 9881.195286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.466 3.534 4 O -0.544 6.544 5 C -0.116 4.116 6 C 0.161 3.839 7 N -0.577 5.577 8 C -0.215 4.215 9 H 0.058 0.942 10 C -0.043 4.043 11 N -0.919 5.919 12 Si 0.940 3.060 13 H -0.299 1.299 14 H -0.298 1.298 15 H -0.261 1.261 16 C 0.118 3.882 17 H 0.105 0.895 18 C -0.138 4.138 19 C 0.386 3.614 20 O -0.482 6.482 21 C -0.293 4.293 22 C 0.177 3.823 23 N -0.544 5.544 24 H 0.442 0.558 25 C 0.255 3.745 26 N -0.504 5.504 27 C 0.129 3.871 28 C -0.186 4.186 29 C -0.058 4.058 30 C -0.139 4.139 31 H 0.062 0.938 32 H 0.135 0.865 33 H 0.051 0.949 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.241 0.759 39 H 0.084 0.916 40 H 0.028 0.972 41 H 0.077 0.923 42 H 0.244 0.756 43 H 0.202 0.798 44 H 0.164 0.836 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -7.300 -17.186 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.311 3.689 4 O -0.434 6.434 5 C -0.156 4.156 6 C 0.034 3.966 7 N -0.296 5.296 8 C -0.345 4.345 9 H 0.076 0.924 10 C -0.239 4.239 11 N -0.564 5.564 12 Si 0.770 3.230 13 H -0.227 1.227 14 H -0.224 1.224 15 H -0.186 1.186 16 C 0.011 3.989 17 H 0.123 0.877 18 C -0.197 4.197 19 C 0.263 3.737 20 O -0.358 6.358 21 C -0.302 4.302 22 C 0.042 3.958 23 N -0.150 5.150 24 H 0.285 0.715 25 C 0.023 3.977 26 N -0.217 5.217 27 C -0.036 4.036 28 C -0.206 4.206 29 C -0.085 4.085 30 C -0.145 4.145 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.103 0.897 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.260 0.740 43 H 0.219 0.781 44 H 0.182 0.818 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.912 -6.685 -17.606 19.056 hybrid contribution -0.280 0.685 2.152 2.276 sum 2.632 -6.000 -15.454 16.785 Atomic orbital electron populations 1.23503 0.75479 1.05543 1.02125 1.86530 1.24612 1.32988 1.83999 1.24405 0.92884 0.80907 0.70745 1.90645 1.68141 1.37709 1.46936 1.22083 0.84819 1.02492 1.06170 1.20566 0.83255 0.91344 1.01428 1.43976 1.01072 1.83294 1.01245 1.18894 1.02320 1.24047 0.89274 0.92444 1.25614 1.00568 0.95830 1.01865 1.70162 1.32518 1.23497 1.30252 0.85699 0.76564 0.78487 0.82289 1.22657 1.22434 1.18582 1.21195 0.94626 0.92834 0.90267 0.87741 1.21977 0.99017 0.97080 1.01619 1.21792 0.77641 0.87970 0.86273 1.90576 1.48512 1.53268 1.43409 1.20429 1.13364 1.00031 0.96426 1.23376 0.92016 0.96447 0.83981 1.41296 1.44398 1.17759 1.11540 0.71529 1.18541 0.98918 0.91282 0.88954 1.66583 1.11751 1.02376 1.41008 1.23078 0.95314 0.94022 0.91218 1.22274 1.01485 1.00483 0.96397 1.21233 0.94403 0.92653 1.00185 1.20012 1.02428 0.97493 0.94575 0.91964 0.84678 0.92981 0.85685 0.88182 0.91462 0.95771 0.95019 0.89735 0.95233 0.90433 0.74044 0.78127 0.81809 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -10.54 10.57 -51.47 -0.54 -11.08 16 3 C 0.47 16.56 7.96 71.24 0.57 17.12 16 4 O -0.54 -23.39 15.73 21.98 0.35 -23.05 16 5 C -0.12 -4.04 6.14 29.85 0.18 -3.85 16 6 C 0.16 7.35 4.50 86.38 0.39 7.74 16 7 N -0.58 -26.73 2.32 -682.19 -1.59 -28.31 16 8 C -0.21 -11.56 7.16 84.03 0.60 -10.95 16 9 H 0.06 3.14 6.83 -2.91 -0.02 3.12 16 10 C -0.04 -2.49 4.93 84.86 0.42 -2.07 16 11 N -0.92 -57.29 11.32 21.65 0.25 -57.04 16 12 Si 0.94 46.98 29.61 68.60 2.03 49.01 16 13 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 14 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 15 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 16 C 0.12 4.23 2.62 44.25 0.12 4.35 16 17 H 0.10 2.93 7.28 -2.39 -0.02 2.91 16 18 C -0.14 -3.92 9.14 71.98 0.66 -3.26 16 19 C 0.39 16.02 6.17 26.55 0.16 16.19 16 20 O -0.48 -26.05 14.67 -3.39 -0.05 -26.10 16 21 C -0.29 -9.61 6.11 -20.06 -0.12 -9.74 16 22 C 0.18 3.44 10.97 84.06 0.92 4.36 16 23 N -0.54 -10.06 5.95 -190.85 -1.14 -11.20 16 24 H 0.44 4.47 8.96 -92.70 -0.83 3.64 16 25 C 0.25 7.02 8.40 133.71 1.12 8.14 16 26 N -0.50 -13.11 10.39 -192.80 -2.00 -15.11 16 27 C 0.13 2.84 11.14 84.80 0.95 3.78 16 28 C -0.19 -4.67 10.11 22.38 0.23 -4.45 16 29 C -0.06 -2.00 9.91 22.56 0.22 -1.78 16 30 C -0.14 -4.76 6.24 -20.05 -0.13 -4.89 16 31 H 0.06 1.31 8.13 -2.39 -0.02 1.30 16 32 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 34 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 35 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.07 3.80 5.27 -2.39 -0.01 3.79 16 37 H 0.02 1.10 7.96 -2.38 -0.02 1.08 16 38 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 39 H 0.08 1.68 7.90 -2.38 -0.02 1.66 16 40 H 0.03 1.02 6.97 -2.39 -0.02 1.01 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.24 2.00 7.63 -2.91 -0.02 1.97 16 43 H 0.20 2.58 8.06 -2.91 -0.02 2.55 16 44 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 45 H 0.11 4.50 7.47 -2.91 -0.02 4.48 16 Total: -1.00 -89.30 383.49 5.00 -84.30 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.21 Total: 16.10 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 7.49 Total: 22.48 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -4.48 Total: -111.66 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: -0.25 Total: -60.23 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -89.30 5.00 -84.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.749 kcal (2) G-P(sol) polarization free energy of solvation -89.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds