Wall clock time and date at job start Wed Apr 1 2020 04:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47165 * 2 1 4 4 C 1.34234 * 116.99936 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00050 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99849 * 179.97438 * 4 3 2 7 7 N 1.46908 * 109.46956 * 185.37584 * 6 4 3 8 8 C 1.46906 * 110.99253 * 290.95991 * 7 6 4 9 9 C 1.50694 * 109.47480 * 288.16860 * 8 7 6 10 10 H 1.08009 * 119.99767 * 3.25496 * 9 8 7 11 11 C 1.37878 * 120.00438 * 183.25758 * 9 8 7 12 12 N 1.31516 * 119.99502 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00345 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47001 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47309 * 119.99665 * 13 11 9 16 16 H 1.48505 * 109.47170 * 240.00049 * 13 11 9 17 17 C 1.37899 * 110.99996 * 54.91132 * 7 6 4 18 18 N 1.32601 * 120.90574 * 253.60365 * 17 7 6 19 19 C 1.32367 * 121.48982 * 179.97438 * 18 17 7 20 20 N 1.31184 * 122.93499 * 0.02562 * 19 18 17 21 21 C 1.34069 * 120.46993 * 359.97438 * 20 19 18 22 22 C 1.40650 * 121.96094 * 180.02562 * 21 20 19 23 23 O 1.35879 * 120.31582 * 359.97225 * 22 21 20 24 24 C 1.42893 * 116.99917 * 180.02562 * 23 22 21 25 25 C 1.37745 * 119.36928 * 179.97438 * 22 21 20 26 26 C 1.39156 * 120.82294 * 359.97438 * 25 22 21 27 27 C 1.36363 * 120.96806 * 359.97438 * 26 25 22 28 28 C 1.39980 * 119.75255 * 359.74766 * 27 26 25 29 29 H 1.09002 * 109.47550 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47183 * 299.99800 * 1 2 3 31 31 H 1.08997 * 109.47076 * 59.99880 * 1 2 3 32 32 H 1.08999 * 109.46705 * 239.99971 * 2 1 3 33 33 H 1.09007 * 109.47105 * 120.00277 * 2 1 3 34 34 H 1.08992 * 109.47323 * 65.37721 * 6 4 3 35 35 H 1.09001 * 109.47304 * 305.37009 * 6 4 3 36 36 H 1.08993 * 109.47341 * 48.17664 * 8 7 6 37 37 H 1.09000 * 109.46344 * 168.17128 * 8 7 6 38 38 H 0.97006 * 119.99597 * 180.02562 * 12 11 9 39 39 H 1.07999 * 118.53253 * 180.02562 * 19 18 17 40 40 H 1.08997 * 109.47580 * 60.00129 * 24 23 22 41 41 H 1.09007 * 109.46768 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47171 * 299.99893 * 24 23 22 43 43 H 1.07996 * 119.59192 * 179.97438 * 25 22 21 44 44 H 1.08000 * 119.51694 * 179.97438 * 26 25 22 45 45 H 1.08000 * 120.12314 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 7 5.3822 2.8627 -0.1290 8 6 5.9897 2.3011 1.0849 9 6 5.9050 3.3094 2.2017 10 1 5.3993 4.2504 2.0424 11 6 6.4730 3.0307 3.4268 12 7 7.0892 1.8851 3.6205 13 14 6.3673 4.2802 4.8112 14 1 5.6281 5.4791 4.3406 15 1 5.6533 3.6798 5.9665 16 1 7.7371 4.6755 5.2270 17 6 5.7434 2.1360 -1.2440 18 7 6.2378 0.9111 -1.1279 19 6 6.5878 0.2032 -2.1902 20 7 6.4737 0.6539 -3.4168 21 6 5.9850 1.8809 -3.6476 22 6 5.8487 2.3952 -4.9496 23 8 6.2158 1.6486 -6.0239 24 6 6.0474 2.2408 -7.3134 25 6 5.3396 3.6630 -5.1252 26 6 4.9599 4.4366 -4.0325 27 6 5.0809 3.9611 -2.7602 28 6 5.5890 2.6747 -2.5448 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6635 3.4373 0.9337 35 1 3.5103 3.5000 -0.8385 36 1 5.4566 1.3950 1.3723 37 1 7.0351 2.0614 0.8904 38 1 7.4884 1.6889 4.4825 39 1 6.9850 -0.7899 -2.0403 40 1 6.6406 3.1533 -7.3745 41 1 6.3783 1.5408 -8.0807 42 1 4.9955 2.4802 -7.4688 43 1 5.2337 4.0617 -6.1233 44 1 4.5636 5.4281 -4.1945 45 1 4.7816 4.5730 -1.9222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:57 Heat of formation + Delta-G solvation = -21.899312 kcal Electronic energy + Delta-G solvation = -31084.044609 eV Core-core repulsion = 26875.726587 eV Total energy + Delta-G solvation = -4208.318021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.39438 -40.20744 -39.17493 -37.38373 -36.63771 -35.68164 -33.00864 -32.33662 -31.65235 -30.78416 -29.76388 -28.18310 -27.49778 -26.55860 -24.08157 -23.85391 -23.10908 -22.01850 -21.34765 -20.45411 -18.45432 -18.33949 -17.41128 -17.17250 -16.53492 -16.36988 -16.06134 -15.91306 -15.64558 -15.11876 -14.86928 -14.78924 -14.43480 -14.30842 -13.87000 -13.55030 -13.53156 -13.15375 -12.78061 -12.69826 -12.26295 -12.17303 -12.15627 -11.91327 -11.57999 -11.49546 -11.40806 -11.28082 -11.14085 -10.84656 -10.77612 -10.53860 -10.38571 -10.21116 -10.17751 -10.02341 -9.43252 -9.04491 -8.69613 -8.54306 -8.13273 -7.45156 -6.06511 -4.11550 0.55524 0.94408 2.07792 2.62176 2.96798 3.07676 3.20514 3.27908 3.35487 3.38322 3.98497 4.30639 4.35056 4.44275 4.68105 4.80417 4.90072 4.95848 4.97276 4.97944 4.99709 5.09498 5.15598 5.20277 5.28895 5.31169 5.33196 5.35952 5.55894 5.60876 5.74117 5.78686 5.82656 5.94371 5.97634 6.13981 6.43765 6.47089 6.60897 6.72692 6.87107 7.15575 7.30238 7.57411 7.64729 7.75790 7.99916 8.16957 8.29887 8.64890 8.94957 9.51898 11.03202 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009733 B = 0.004020 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.029187 B = 6963.089110 C = 8361.044942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.365 6.365 4 C 0.418 3.582 5 O -0.469 6.469 6 C 0.076 3.924 7 N -0.452 5.452 8 C 0.191 3.809 9 C -0.527 4.527 10 H 0.065 0.935 11 C 0.061 3.939 12 N -0.886 5.886 13 Si 0.898 3.102 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.397 3.603 18 N -0.507 5.507 19 C 0.312 3.688 20 N -0.520 5.520 21 C 0.151 3.849 22 C 0.138 3.862 23 O -0.294 6.294 24 C 0.024 3.976 25 C -0.192 4.192 26 C -0.100 4.100 27 C -0.096 4.096 28 C -0.132 4.132 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.046 0.954 38 H 0.262 0.738 39 H 0.190 0.810 40 H 0.055 0.945 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 2.241 -16.793 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.282 6.282 4 C 0.257 3.743 5 O -0.353 6.353 6 C -0.052 4.052 7 N -0.170 5.170 8 C 0.068 3.932 9 C -0.565 4.565 10 H 0.084 0.916 11 C -0.142 4.142 12 N -0.524 5.524 13 Si 0.726 3.274 14 H -0.195 1.195 15 H -0.211 1.211 16 H -0.210 1.210 17 C 0.145 3.855 18 N -0.225 5.225 19 C 0.021 3.979 20 N -0.236 5.236 21 C 0.022 3.978 22 C 0.091 3.909 23 O -0.206 6.206 24 C -0.071 4.071 25 C -0.214 4.214 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.139 4.139 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.160 0.840 35 H 0.126 0.874 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.206 0.794 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.018 1.112 -16.666 18.982 hybrid contribution -0.385 0.665 0.709 1.045 sum -9.403 1.777 -15.957 18.606 Atomic orbital electron populations 1.21778 0.92988 1.02594 1.03295 1.22905 0.94958 0.81023 1.02353 1.86499 1.25297 1.31810 1.84626 1.25255 0.80756 0.94602 0.73640 1.90833 1.59214 1.42488 1.42785 1.22084 0.85654 0.90312 1.07145 1.59643 1.05716 1.46436 1.05212 1.20072 0.96052 0.95165 0.81904 1.21184 1.37012 1.02844 0.95508 0.91646 1.24953 0.95092 0.95494 0.98619 1.70006 1.35973 1.22404 1.24015 0.86448 0.77868 0.81282 0.81852 1.19532 1.21051 1.20953 1.20468 0.88772 0.86295 0.89948 1.68736 1.14273 1.04931 1.34580 1.24759 0.91229 0.99411 0.82479 1.68746 1.17103 1.12933 1.24795 1.18026 0.97947 0.91261 0.90548 1.18543 0.96286 0.90282 0.85763 1.86202 1.79735 1.41662 1.13010 1.23098 1.01294 0.99809 0.82897 1.21134 1.05889 0.93961 1.00413 1.20595 0.99835 0.99741 0.91664 1.20894 0.98896 0.94015 0.97836 1.18961 1.04692 0.96963 0.93274 0.90610 0.91449 0.91764 0.91909 0.91259 0.84002 0.87414 0.94556 0.93633 0.92804 0.79376 0.92653 0.88211 0.92710 0.85008 0.85236 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -5.96 10.22 -39.27 -0.40 -6.36 16 4 C 0.42 7.93 7.24 36.00 0.26 8.19 16 5 O -0.47 -10.40 11.37 -18.75 -0.21 -10.61 16 6 C 0.08 1.34 5.47 -4.97 -0.03 1.31 16 7 N -0.45 -9.48 4.13 -175.40 -0.72 -10.21 16 8 C 0.19 4.94 3.76 -4.98 -0.02 4.92 16 9 C -0.53 -14.10 8.52 -34.44 -0.29 -14.40 16 10 H 0.07 1.65 7.45 -52.48 -0.39 1.26 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 13 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.40 8.21 4.67 -154.95 -0.72 7.49 16 18 N -0.51 -11.12 7.08 -13.53 -0.10 -11.22 16 19 C 0.31 6.02 12.22 -92.18 -1.13 4.90 16 20 N -0.52 -9.97 10.27 -12.56 -0.13 -10.09 16 21 C 0.15 2.74 6.63 -84.72 -0.56 2.18 16 22 C 0.14 2.09 6.73 -38.85 -0.26 1.83 16 23 O -0.29 -4.15 10.33 -19.36 -0.20 -4.35 16 24 C 0.02 0.20 9.81 101.05 0.99 1.20 16 25 C -0.19 -2.29 9.03 -39.42 -0.36 -2.64 16 26 C -0.10 -1.17 9.95 -39.92 -0.40 -1.57 16 27 C -0.10 -1.38 8.65 -39.60 -0.34 -1.73 16 28 C -0.13 -2.38 5.67 -106.69 -0.61 -2.98 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.89 8.13 -51.93 -0.42 0.46 16 33 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 34 H 0.14 2.43 7.04 -51.93 -0.37 2.07 16 35 H 0.11 1.49 6.22 -51.93 -0.32 1.17 16 36 H 0.04 1.04 5.90 -51.93 -0.31 0.73 16 37 H 0.05 1.33 7.67 -51.93 -0.40 0.93 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.19 3.05 8.06 -52.49 -0.42 2.63 16 40 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 43 H 0.13 1.13 6.26 -52.49 -0.33 0.80 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.14 1.88 6.53 -52.49 -0.34 1.54 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -34.82 373.49 -9.13 -43.96 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.77 Total: 2.53 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -2.95 Total: 10.27 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.21 Total: -56.97 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.81 Total: -21.33 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.82 -9.13 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.058 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds