Wall clock time and date at job start Wed Apr 1 2020 04:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47165 * 2 1 4 4 C 1.34234 * 116.99936 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00050 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99849 * 179.97438 * 4 3 2 7 7 N 1.46908 * 109.46956 * 185.37584 * 6 4 3 8 8 C 1.46906 * 110.99253 * 290.95991 * 7 6 4 9 9 C 1.50694 * 109.47480 * 288.16860 * 8 7 6 10 10 H 1.08009 * 119.99767 * 3.25496 * 9 8 7 11 11 C 1.37878 * 120.00438 * 183.25758 * 9 8 7 12 12 N 1.31516 * 119.99502 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00345 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47001 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47309 * 119.99665 * 13 11 9 16 16 H 1.48505 * 109.47170 * 240.00049 * 13 11 9 17 17 C 1.37899 * 110.99996 * 54.91132 * 7 6 4 18 18 N 1.32601 * 120.90574 * 253.60365 * 17 7 6 19 19 C 1.32367 * 121.48982 * 179.97438 * 18 17 7 20 20 N 1.31184 * 122.93499 * 0.02562 * 19 18 17 21 21 C 1.34069 * 120.46993 * 359.97438 * 20 19 18 22 22 C 1.40650 * 121.96094 * 180.02562 * 21 20 19 23 23 O 1.35879 * 120.31582 * 359.97225 * 22 21 20 24 24 C 1.42893 * 116.99917 * 180.02562 * 23 22 21 25 25 C 1.37745 * 119.36928 * 179.97438 * 22 21 20 26 26 C 1.39156 * 120.82294 * 359.97438 * 25 22 21 27 27 C 1.36363 * 120.96806 * 359.97438 * 26 25 22 28 28 C 1.39980 * 119.75255 * 359.74766 * 27 26 25 29 29 H 1.09002 * 109.47550 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47183 * 299.99800 * 1 2 3 31 31 H 1.08997 * 109.47076 * 59.99880 * 1 2 3 32 32 H 1.08999 * 109.46705 * 239.99971 * 2 1 3 33 33 H 1.09007 * 109.47105 * 120.00277 * 2 1 3 34 34 H 1.08992 * 109.47323 * 65.37721 * 6 4 3 35 35 H 1.09001 * 109.47304 * 305.37009 * 6 4 3 36 36 H 1.08993 * 109.47341 * 48.17664 * 8 7 6 37 37 H 1.09000 * 109.46344 * 168.17128 * 8 7 6 38 38 H 0.97006 * 119.99597 * 180.02562 * 12 11 9 39 39 H 1.07999 * 118.53253 * 180.02562 * 19 18 17 40 40 H 1.08997 * 109.47580 * 60.00129 * 24 23 22 41 41 H 1.09007 * 109.46768 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47171 * 299.99893 * 24 23 22 43 43 H 1.07996 * 119.59192 * 179.97438 * 25 22 21 44 44 H 1.08000 * 119.51694 * 179.97438 * 26 25 22 45 45 H 1.08000 * 120.12314 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0000 7 7 5.3822 2.8627 -0.1290 8 6 5.9897 2.3011 1.0849 9 6 5.9050 3.3094 2.2017 10 1 5.3993 4.2504 2.0424 11 6 6.4730 3.0307 3.4268 12 7 7.0892 1.8851 3.6205 13 14 6.3673 4.2802 4.8112 14 1 5.6281 5.4791 4.3406 15 1 5.6533 3.6798 5.9665 16 1 7.7371 4.6755 5.2270 17 6 5.7434 2.1360 -1.2440 18 7 6.2378 0.9111 -1.1279 19 6 6.5878 0.2032 -2.1902 20 7 6.4737 0.6539 -3.4168 21 6 5.9850 1.8809 -3.6476 22 6 5.8487 2.3952 -4.9496 23 8 6.2158 1.6486 -6.0239 24 6 6.0474 2.2408 -7.3134 25 6 5.3396 3.6630 -5.1252 26 6 4.9599 4.4366 -4.0325 27 6 5.0809 3.9611 -2.7602 28 6 5.5890 2.6747 -2.5448 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6635 3.4373 0.9337 35 1 3.5103 3.5000 -0.8385 36 1 5.4566 1.3950 1.3723 37 1 7.0351 2.0614 0.8904 38 1 7.4884 1.6889 4.4825 39 1 6.9850 -0.7899 -2.0403 40 1 6.6406 3.1533 -7.3745 41 1 6.3783 1.5408 -8.0807 42 1 4.9955 2.4802 -7.4688 43 1 5.2337 4.0617 -6.1233 44 1 4.5636 5.4281 -4.1945 45 1 4.7816 4.5730 -1.9222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:55 Heat of formation + Delta-G solvation = -44.403584 kcal Electronic energy + Delta-G solvation = -31085.020467 eV Core-core repulsion = 26875.726587 eV Total energy + Delta-G solvation = -4209.293880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.75498 -41.58109 -40.31072 -38.81822 -37.76495 -37.19567 -34.93058 -33.87155 -32.73591 -32.07409 -30.90583 -29.86064 -28.48282 -28.04516 -25.43263 -25.30440 -24.36476 -23.49222 -22.63899 -21.87513 -19.80955 -19.47745 -18.86116 -18.62966 -18.25104 -17.71789 -17.27463 -17.14912 -16.93109 -16.60470 -16.28593 -16.06054 -15.81348 -15.60730 -15.14006 -15.09202 -14.66777 -14.50002 -14.18128 -13.66111 -13.60326 -13.49016 -13.21569 -13.16120 -12.95271 -12.77513 -12.72885 -12.56281 -12.47033 -12.41507 -12.29855 -12.07136 -11.93495 -11.67771 -11.58666 -11.50804 -11.35421 -10.63420 -10.29564 -10.15789 -9.71421 -8.71277 -8.17798 -6.31400 -0.72408 -0.29035 0.82116 1.14459 1.44761 1.45869 1.59213 1.65117 2.01979 2.10860 2.39430 2.62224 3.03476 3.09031 3.15916 3.36084 3.60718 3.75712 3.86461 3.90535 3.91571 4.05039 4.07978 4.14556 4.26467 4.36331 4.39297 4.42090 4.43732 4.47464 4.76102 4.77646 4.84722 4.87827 4.97033 5.08181 5.15000 5.22391 5.35454 5.38745 5.42293 5.57044 5.64433 5.77161 5.92143 6.05367 6.32295 6.43310 6.71573 6.83735 7.22683 7.38285 8.93528 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009733 B = 0.004020 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.029187 B = 6963.089110 C = 8361.044942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.415 3.585 5 O -0.508 6.508 6 C 0.075 3.925 7 N -0.448 5.448 8 C 0.219 3.781 9 C -0.532 4.532 10 H 0.084 0.916 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.975 3.025 14 H -0.248 1.248 15 H -0.282 1.282 16 H -0.284 1.284 17 C 0.375 3.625 18 N -0.549 5.549 19 C 0.289 3.711 20 N -0.525 5.525 21 C 0.114 3.886 22 C 0.125 3.875 23 O -0.323 6.323 24 C 0.013 3.987 25 C -0.172 4.172 26 C -0.070 4.070 27 C -0.115 4.115 28 C -0.137 4.137 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.000 1.000 37 H -0.004 1.004 38 H 0.262 0.738 39 H 0.202 0.798 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.075 0.925 43 H 0.177 0.823 44 H 0.180 0.820 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 6.022 -19.189 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.256 3.744 5 O -0.395 6.395 6 C -0.053 4.053 7 N -0.166 5.166 8 C 0.094 3.906 9 C -0.571 4.571 10 H 0.102 0.898 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.799 3.201 14 H -0.171 1.171 15 H -0.208 1.208 16 H -0.211 1.211 17 C 0.123 3.877 18 N -0.267 5.267 19 C -0.001 4.001 20 N -0.240 5.240 21 C -0.014 4.014 22 C 0.078 3.922 23 O -0.236 6.236 24 C -0.081 4.081 25 C -0.193 4.193 26 C -0.088 4.088 27 C -0.135 4.135 28 C -0.144 4.144 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.017 0.983 37 H 0.015 0.985 38 H 0.071 0.929 39 H 0.218 0.782 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.093 0.907 43 H 0.194 0.806 44 H 0.197 0.803 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.545 4.915 -19.118 22.868 hybrid contribution 0.328 -0.510 1.171 1.319 sum -11.216 4.406 -17.947 21.617 Atomic orbital electron populations 1.21788 0.89307 1.04402 1.04059 1.23190 0.97722 0.79739 1.01327 1.86492 1.23750 1.33210 1.84000 1.25552 0.81353 0.94798 0.72681 1.90836 1.60284 1.43819 1.44603 1.22322 0.83875 0.89947 1.09151 1.59589 1.07530 1.46046 1.03429 1.19409 0.93090 0.93991 0.84083 1.21593 1.36440 1.03339 0.95694 0.89811 1.26004 0.94576 0.97472 1.01713 1.70190 1.37444 1.24977 1.24746 0.85256 0.77852 0.79063 0.77971 1.17127 1.20835 1.21059 1.20657 0.89682 0.86431 0.90933 1.68613 1.15607 1.06426 1.36072 1.24941 0.92648 1.00041 0.82484 1.68728 1.16958 1.14075 1.24280 1.18564 0.99212 0.91170 0.92459 1.18698 0.96947 0.91521 0.85036 1.86165 1.79810 1.43019 1.14564 1.23483 1.03060 1.00980 0.80543 1.21686 1.02781 0.92124 1.02713 1.21178 0.96432 1.01148 0.90034 1.21128 0.99860 0.92649 0.99907 1.19060 1.05146 0.98516 0.91643 0.88283 0.90940 0.90639 0.92623 0.92810 0.83509 0.83115 0.98257 0.98547 0.92884 0.78185 0.90855 0.86657 0.90697 0.80574 0.80310 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 10.29 71.98 0.74 -1.82 16 2 C 0.05 1.54 6.19 71.98 0.45 1.98 16 3 O -0.36 -11.77 10.22 -51.45 -0.53 -12.29 16 4 C 0.41 16.34 7.24 71.24 0.52 16.85 16 5 O -0.51 -24.29 11.37 21.97 0.25 -24.04 16 6 C 0.07 2.62 5.47 85.55 0.47 3.08 16 7 N -0.45 -19.51 4.13 -708.83 -2.92 -22.43 16 8 C 0.22 12.09 3.76 85.55 0.32 12.41 16 9 C -0.53 -29.22 8.52 25.60 0.22 -29.00 16 10 H 0.08 4.18 7.45 -2.91 -0.02 4.16 16 11 C 0.00 0.04 5.46 84.65 0.46 0.51 16 12 N -0.93 -57.93 13.29 21.45 0.28 -57.64 16 13 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 14 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 C 0.37 16.33 4.67 134.00 0.63 16.95 16 18 N -0.55 -26.28 7.08 -196.72 -1.39 -27.67 16 19 C 0.29 12.26 12.22 180.89 2.21 14.47 16 20 N -0.52 -21.27 10.27 -193.64 -1.99 -23.26 16 21 C 0.11 4.19 6.63 40.20 0.27 4.46 16 22 C 0.13 3.54 6.73 22.74 0.15 3.70 16 23 O -0.32 -8.56 10.33 -92.19 -0.95 -9.51 16 24 C 0.01 0.17 9.81 113.37 1.11 1.29 16 25 C -0.17 -3.25 9.03 22.37 0.20 -3.05 16 26 C -0.07 -1.27 9.95 22.05 0.22 -1.05 16 27 C -0.11 -3.01 8.65 22.25 0.19 -2.82 16 28 C -0.14 -4.96 5.67 -21.21 -0.12 -5.08 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 33 H 0.05 1.68 8.13 -2.38 -0.02 1.66 16 34 H 0.15 4.97 7.04 -2.39 -0.02 4.95 16 35 H 0.15 3.90 6.22 -2.39 -0.01 3.88 16 36 H 0.00 -0.03 5.90 -2.39 -0.01 -0.04 16 37 H 0.00 -0.24 7.67 -2.39 -0.02 -0.26 16 38 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 39 H 0.20 7.37 8.06 -2.91 -0.02 7.35 16 40 H 0.07 0.71 7.67 -2.39 -0.02 0.69 16 41 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 43 H 0.18 1.78 6.26 -2.91 -0.02 1.76 16 44 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.15 3.59 6.53 -2.91 -0.02 3.57 16 Total: -1.00 -84.25 373.49 3.84 -80.41 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 1.03 Total: 18.25 kcal Atomic # 6 Polarization: 24.85 SS G_CDS: 8.03 Total: 32.88 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -6.02 Total: -131.01 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -1.23 Total: -45.85 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -84.25 3.84 -80.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.011 kcal (2) G-P(sol) polarization free energy of solvation -84.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds